Wall clock time and date at job start Tue Mar 31 2020 20:40:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 H 1.08993 * 109.47043 * 2 1 4 4 N 1.46493 * 109.47065 * 120.00658 * 2 1 3 5 5 C 1.34778 * 119.99960 * 274.99546 * 4 2 1 6 6 O 1.21558 * 119.99952 * 0.02562 * 5 4 2 7 7 C 1.47848 * 120.00481 * 179.97438 * 5 4 2 8 8 C 1.39557 * 120.54182 * 0.02562 * 7 5 4 9 9 N 1.31663 * 120.62077 * 179.71706 * 8 7 5 10 10 C 1.31943 * 121.90711 * 0.28045 * 9 8 7 11 11 C 1.38533 * 121.04486 * 359.97381 * 10 9 8 12 12 F 1.35093 * 120.37404 * 180.02562 * 11 10 9 13 13 C 1.38619 * 119.25217 * 0.02562 * 11 10 9 14 14 C 1.53001 * 109.46744 * 240.00294 * 2 1 3 15 15 H 1.09004 * 109.47197 * 300.00195 * 14 2 1 16 16 C 1.52996 * 109.47081 * 180.02562 * 14 2 1 17 17 N 1.46901 * 109.47157 * 60.00316 * 14 2 1 18 18 C 1.46905 * 110.99957 * 205.00090 * 17 14 2 19 19 C 1.50692 * 109.47219 * 179.97438 * 18 17 14 20 20 O 1.21290 * 120.00071 * 0.02562 * 19 18 17 21 21 N 1.34782 * 119.99957 * 179.97438 * 19 18 17 22 22 C 1.37102 * 119.99558 * 179.97438 * 21 19 18 23 23 H 1.07995 * 120.00210 * 0.02562 * 22 21 19 24 24 C 1.38953 * 119.99485 * 180.02562 * 22 21 19 25 25 N 1.31414 * 119.99958 * 0.02562 * 24 22 21 26 26 Si 1.86802 * 119.99738 * 179.97438 * 24 22 21 27 27 H 1.48501 * 109.46855 * 90.00590 * 26 24 22 28 28 H 1.48496 * 109.46863 * 209.99847 * 26 24 22 29 29 H 1.48497 * 109.47345 * 330.00490 * 26 24 22 30 30 H 1.08998 * 109.47008 * 179.97438 * 1 2 3 31 31 H 1.08998 * 109.46713 * 299.99741 * 1 2 3 32 32 H 1.08994 * 109.46969 * 59.99668 * 1 2 3 33 33 H 0.97001 * 120.00307 * 94.99657 * 4 2 1 34 34 H 1.08002 * 119.69336 * 359.97438 * 8 7 5 35 35 H 1.07995 * 119.47514 * 179.97438 * 10 9 8 36 36 H 1.08004 * 120.86931 * 180.02562 * 13 11 10 37 37 H 1.09002 * 109.47499 * 180.02562 * 16 14 2 38 38 H 1.09004 * 109.47161 * 300.00090 * 16 14 2 39 39 H 1.08994 * 109.47428 * 59.99827 * 16 14 2 40 40 H 1.00900 * 110.99600 * 328.94828 * 17 14 2 41 41 H 1.09003 * 109.46513 * 299.99534 * 18 17 14 42 42 H 1.09004 * 109.47417 * 59.99655 * 18 17 14 43 43 H 0.96992 * 119.99892 * 0.02562 * 21 19 18 44 44 H 0.97006 * 119.99869 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 2.1472 -0.0185 2.3571 6 8 1.8577 1.1609 2.4119 7 6 2.6394 -0.7156 3.5644 8 6 2.9745 -2.0694 3.5145 9 7 3.4183 -2.6904 4.5873 10 6 3.5591 -2.0707 5.7436 11 6 3.2435 -0.7285 5.8780 12 9 3.3934 -0.1074 7.0682 13 6 2.7722 -0.0300 4.7773 14 6 2.0400 -0.7212 -1.2493 15 1 1.6766 -1.7489 -1.2494 16 6 3.5699 -0.7218 -1.2491 17 7 1.5503 -0.0286 -2.4487 18 6 1.4874 -0.9436 -3.5962 19 6 0.9814 -0.1995 -4.8050 20 8 0.7012 0.9775 -4.7191 21 7 0.8412 -0.8416 -5.9817 22 6 0.3803 -0.1646 -7.0812 23 1 0.1300 0.8832 -7.0046 24 6 0.2352 -0.8266 -8.2942 25 7 0.5393 -2.1017 -8.3873 26 14 -0.3934 0.0955 -9.7922 27 1 0.7545 0.6793 -10.5317 28 1 -1.1277 -0.8426 -10.6787 29 1 -1.3064 1.1828 -9.3571 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 2.2490 -1.6319 1.1524 34 1 2.8728 -2.6119 2.5861 35 1 3.9263 -2.6185 6.5988 36 1 2.5186 1.0171 4.8525 37 1 3.9333 -1.2352 -2.1393 38 1 3.9337 0.3057 -1.2488 39 1 3.9330 -1.2359 -0.3592 40 1 0.6527 0.3994 -2.2779 41 1 2.4828 -1.3373 -3.8019 42 1 0.8110 -1.7673 -3.3676 43 1 1.0656 -1.7826 -6.0504 44 1 0.4377 -2.5640 -9.2341 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282111914.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:47 Heat of formation + Delta-G solvation = -102.726159 kcal Electronic energy + Delta-G solvation = -27967.270909 eV Core-core repulsion = 23640.164940 eV Total energy + Delta-G solvation = -4327.105969 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.11357 -41.81092 -40.50240 -40.06150 -38.47747 -36.06121 -35.45158 -33.81469 -33.27365 -32.71853 -31.33866 -30.72780 -28.03838 -26.23562 -25.90455 -24.78526 -24.17511 -21.91513 -21.55253 -21.08917 -19.92624 -19.52895 -18.56972 -18.08279 -17.91062 -17.36554 -17.15865 -16.99347 -16.82343 -16.40180 -16.16345 -15.92888 -15.42705 -15.41167 -14.99700 -14.90602 -14.69185 -14.42742 -14.32333 -14.18244 -14.08452 -13.52374 -13.48429 -13.46093 -13.12280 -12.89509 -12.66765 -12.60032 -12.40616 -12.33059 -12.11706 -11.66051 -11.58840 -11.49593 -11.15300 -10.72821 -10.34599 -10.32562 -10.12847 -10.00016 -9.33378 -8.45816 -5.94080 -0.67189 -0.19408 1.38600 1.42709 1.54909 1.61865 1.78953 2.07142 2.30390 2.54585 2.81321 2.97609 3.14422 3.21855 3.47554 3.53047 3.55945 3.58924 3.62810 3.94250 3.95455 4.17892 4.32808 4.35930 4.45275 4.48595 4.55159 4.62173 4.65251 4.72291 4.73370 4.87781 4.95752 5.02352 5.20971 5.28988 5.34669 5.41747 5.43239 5.91104 6.12004 6.35179 6.40247 6.53950 6.61746 7.03189 7.14212 7.58103 8.13804 8.71382 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.037408 B = 0.001684 C = 0.001643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 748.327175 B =16621.275825 C =17037.547178 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C 0.149 3.851 3 H 0.074 0.926 4 N -0.694 5.694 5 C 0.567 3.433 6 O -0.569 6.569 7 C -0.164 4.164 8 C 0.137 3.863 9 N -0.471 5.471 10 C 0.108 3.892 11 C 0.038 3.962 12 F -0.129 7.129 13 C -0.060 4.060 14 C 0.082 3.918 15 H 0.077 0.923 16 C -0.140 4.140 17 N -0.680 5.680 18 C 0.067 3.933 19 C 0.436 3.564 20 O -0.625 6.625 21 N -0.572 5.572 22 C -0.334 4.334 23 H 0.077 0.923 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.991 3.009 27 H -0.272 1.272 28 H -0.270 1.270 29 H -0.274 1.274 30 H 0.077 0.923 31 H 0.055 0.945 32 H 0.063 0.937 33 H 0.417 0.583 34 H 0.198 0.802 35 H 0.201 0.799 36 H 0.153 0.847 37 H 0.058 0.942 38 H 0.043 0.957 39 H 0.082 0.918 40 H 0.346 0.654 41 H 0.106 0.894 42 H 0.073 0.927 43 H 0.397 0.603 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.334 -7.472 27.522 29.213 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.225 4.225 2 C 0.044 3.956 3 H 0.093 0.907 4 N -0.347 5.347 5 C 0.353 3.647 6 O -0.449 6.449 7 C -0.169 4.169 8 C -0.021 4.021 9 N -0.178 5.178 10 C -0.050 4.050 11 C 0.017 3.983 12 F -0.107 7.107 13 C -0.087 4.087 14 C -0.027 4.027 15 H 0.095 0.905 16 C -0.198 4.198 17 N -0.316 5.316 18 C -0.065 4.065 19 C 0.224 3.776 20 O -0.511 6.511 21 N -0.210 5.210 22 C -0.464 4.464 23 H 0.095 0.905 24 C -0.212 4.212 25 N -0.559 5.559 26 Si 0.815 3.185 27 H -0.198 1.198 28 H -0.195 1.195 29 H -0.199 1.199 30 H 0.096 0.904 31 H 0.074 0.926 32 H 0.082 0.918 33 H 0.256 0.744 34 H 0.215 0.785 35 H 0.218 0.782 36 H 0.171 0.829 37 H 0.077 0.923 38 H 0.062 0.938 39 H 0.101 0.899 40 H 0.168 0.832 41 H 0.124 0.876 42 H 0.091 0.909 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.760 -6.620 27.239 28.835 hybrid contribution -1.128 0.482 -0.519 1.332 sum 5.633 -6.138 26.720 27.989 Atomic orbital electron populations 1.22214 0.94789 1.03265 1.02261 1.20885 0.94106 0.97186 0.83393 0.90738 1.45650 1.66183 1.14635 1.08256 1.18119 0.77241 0.85953 0.83359 1.90822 1.51518 1.17236 1.85310 1.20755 1.05952 0.96249 0.93928 1.23528 0.90526 0.89718 0.98367 1.67908 1.12821 1.38022 0.99032 1.23623 0.94149 0.89769 0.97455 1.18705 1.04425 0.93214 0.81981 1.91557 1.93462 1.82683 1.43038 1.21878 0.94000 1.02062 0.90777 1.21790 0.96872 0.96784 0.87295 0.90546 1.21838 0.93464 1.01992 1.02485 1.60162 1.35348 1.32624 1.03488 1.21582 1.02554 0.93631 0.88733 1.20942 0.83174 0.87991 0.85518 1.90503 1.56672 1.18340 1.85631 1.41917 1.58271 1.12616 1.08178 1.19652 1.42087 0.95951 0.88676 0.90457 1.25998 0.97279 0.96615 1.01265 1.69664 1.48627 1.09570 1.28082 0.84956 0.78396 0.77843 0.77318 1.19773 1.19491 1.19903 0.90402 0.92588 0.91838 0.74393 0.78510 0.78208 0.82923 0.92321 0.93776 0.89947 0.83181 0.87583 0.90897 0.76876 0.91312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.25 9.25 71.98 0.67 -2.58 16 2 C 0.15 2.87 2.29 45.00 0.10 2.97 16 3 H 0.07 1.91 7.58 -2.39 -0.02 1.90 16 4 N -0.69 -9.38 4.34 -445.41 -1.93 -11.31 16 5 C 0.57 10.38 7.75 86.79 0.67 11.06 16 6 O -0.57 -15.65 16.08 -3.90 -0.06 -15.71 16 7 C -0.16 -2.25 5.89 -20.00 -0.12 -2.37 16 8 C 0.14 1.28 10.71 85.04 0.91 2.19 16 9 N -0.47 -5.26 10.34 -194.59 -2.01 -7.28 16 10 C 0.11 1.04 11.16 84.75 0.95 1.98 16 11 C 0.04 0.48 7.33 22.43 0.16 0.64 16 12 F -0.13 -1.79 17.28 44.97 0.78 -1.01 16 13 C -0.06 -0.89 9.70 22.78 0.22 -0.67 16 14 C 0.08 1.57 2.28 44.91 0.10 1.68 16 15 H 0.08 1.10 7.80 -2.39 -0.02 1.08 16 16 C -0.14 -2.52 9.26 71.98 0.67 -1.85 16 17 N -0.68 -19.71 5.93 -495.57 -2.94 -22.65 16 18 C 0.07 2.11 5.96 85.55 0.51 2.62 16 19 C 0.44 20.15 7.82 87.65 0.69 20.84 16 20 O -0.62 -34.28 15.78 -3.06 -0.05 -34.33 16 21 N -0.57 -28.68 5.29 -306.99 -1.62 -30.30 16 22 C -0.33 -18.79 9.68 84.04 0.81 -17.98 16 23 H 0.08 4.67 7.16 -2.91 -0.02 4.65 16 24 C -0.01 -0.62 5.50 84.93 0.47 -0.15 16 25 N -0.92 -48.72 13.05 21.66 0.28 -48.44 16 26 Si 0.99 42.63 29.55 68.60 2.03 44.66 16 27 H -0.27 -11.42 7.11 99.48 0.71 -10.72 16 28 H -0.27 -10.96 7.11 99.48 0.71 -10.26 16 29 H -0.27 -11.90 7.11 99.48 0.71 -11.19 16 30 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 31 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 32 H 0.06 1.42 6.21 -2.39 -0.01 1.40 16 33 H 0.42 2.53 6.45 -92.71 -0.60 1.93 16 34 H 0.20 0.45 6.42 -2.91 -0.02 0.43 16 35 H 0.20 0.72 8.06 -2.91 -0.02 0.69 16 36 H 0.15 2.46 7.74 -2.91 -0.02 2.44 16 37 H 0.06 1.10 7.45 -2.39 -0.02 1.08 16 38 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 39 H 0.08 0.96 7.44 -2.39 -0.02 0.94 16 40 H 0.35 10.76 5.86 -89.69 -0.53 10.24 16 41 H 0.11 2.97 7.44 -2.39 -0.02 2.96 16 42 H 0.07 1.91 8.06 -2.38 -0.02 1.89 16 43 H 0.40 18.70 7.90 -92.71 -0.73 17.97 16 44 H 0.28 13.78 8.31 -92.70 -0.77 13.01 16 Total: -1.00 -74.74 377.85 0.50 -74.23 By element: Atomic # 1 Polarization: 34.54 SS G_CDS: -0.77 Total: 33.77 kcal Atomic # 6 Polarization: 11.57 SS G_CDS: 6.81 Total: 18.38 kcal Atomic # 7 Polarization: -111.75 SS G_CDS: -8.23 Total: -119.98 kcal Atomic # 8 Polarization: -49.93 SS G_CDS: -0.11 Total: -50.04 kcal Atomic # 9 Polarization: -1.79 SS G_CDS: 0.78 Total: -1.01 kcal Atomic # 14 Polarization: 42.63 SS G_CDS: 2.03 Total: 44.66 kcal Total: -74.74 0.50 -74.23 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282111914.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.496 kcal (2) G-P(sol) polarization free energy of solvation -74.735 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.505 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.231 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds