Wall clock time and date at job start Tue Mar 31 2020 20:40:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 N 1.46902 * 109.47489 * 239.99592 * 2 1 3 5 5 C 1.46901 * 110.99865 * 85.00085 * 4 2 1 6 6 C 1.50697 * 109.47446 * 180.02562 * 5 4 2 7 7 O 1.21296 * 119.99612 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99987 * 180.02562 * 8 6 5 10 10 H 1.07996 * 119.99663 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00203 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00373 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99867 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47089 * 90.00150 * 13 11 9 15 15 H 1.48493 * 109.47202 * 210.00082 * 13 11 9 16 16 H 1.48499 * 109.47002 * 329.99946 * 13 11 9 17 17 C 1.53006 * 109.47164 * 119.99948 * 2 1 3 18 18 H 1.08997 * 109.47395 * 185.00408 * 17 2 1 19 19 C 1.52999 * 109.47054 * 64.99950 * 17 2 1 20 20 N 1.46498 * 109.46687 * 304.99949 * 17 2 1 21 21 C 1.34781 * 119.99897 * 204.99896 * 20 17 2 22 22 O 1.21526 * 119.99770 * 0.02562 * 21 20 17 23 23 C 1.48050 * 119.99976 * 180.02562 * 21 20 17 24 24 C 1.39380 * 119.69162 * 179.72876 * 23 21 20 25 25 C 1.38461 * 119.09528 * 179.75338 * 24 23 21 26 26 C 1.38903 * 118.46628 * 0.51013 * 25 24 23 27 27 F 1.35107 * 120.34913 * 179.75110 * 26 25 24 28 28 C 1.38871 * 119.29747 * 359.72909 * 26 25 24 29 29 N 1.31455 * 120.85971 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 33 33 H 1.00897 * 110.99993 * 208.95314 * 4 2 1 34 34 H 1.09005 * 109.47362 * 300.00272 * 5 4 2 35 35 H 1.09000 * 109.47455 * 59.99836 * 5 4 2 36 36 H 0.96994 * 119.99986 * 359.97438 * 8 6 5 37 37 H 0.97002 * 120.00276 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47069 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.47018 * 300.00144 * 19 17 2 40 40 H 1.08995 * 109.47070 * 60.00530 * 19 17 2 41 41 H 0.96993 * 120.00521 * 25.00101 * 20 17 2 42 42 H 1.08005 * 120.45184 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.76938 * 180.21612 * 25 24 23 44 44 H 1.08000 * 119.57166 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5875 -0.5219 -3.5560 7 8 2.8679 -1.6989 -3.4701 8 7 2.7284 0.1204 -4.7324 9 6 3.1873 -0.5570 -5.8326 10 1 3.4362 -1.6051 -5.7563 11 6 3.3322 0.1049 -7.0456 12 7 3.7725 -0.5441 -8.0999 13 14 2.9009 1.9178 -7.1776 14 1 4.1018 2.7358 -6.8714 15 1 2.4366 2.2170 -8.5560 16 1 1.8216 2.2415 -6.2105 17 6 2.0400 -0.7213 1.2493 18 1 3.1263 -0.6443 1.2953 19 6 1.6352 -2.1955 1.1880 20 7 1.4558 -0.1036 2.4423 21 6 2.0912 -0.1937 3.6276 22 8 3.1489 -0.7869 3.7064 23 6 1.5006 0.4301 4.8334 24 6 2.1603 0.3281 6.0569 25 6 1.5994 0.9205 7.1757 26 6 0.3891 1.5875 7.0351 27 9 -0.1946 2.1749 8.1027 28 6 -0.2143 1.6446 5.7857 29 7 0.3449 1.0765 4.7403 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.9174 -1.1205 -1.0286 34 1 1.0871 0.6162 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 2.5045 1.0616 -4.8010 37 1 3.8739 -0.0819 -8.9467 38 1 1.9982 -2.7092 2.0782 39 1 0.5489 -2.2724 1.1421 40 1 2.0699 -2.6550 0.3004 41 1 0.6118 0.3702 2.3794 42 1 3.0980 -0.2026 6.1306 43 1 2.0892 0.8612 8.1365 44 1 -1.1551 2.1624 5.6712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282121821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:23 Heat of formation + Delta-G solvation = -69.145473 kcal Electronic energy + Delta-G solvation = -27985.173511 eV Core-core repulsion = 23659.523710 eV Total energy + Delta-G solvation = -4325.649801 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.67645 -41.15009 -39.65630 -38.57516 -37.41921 -34.64698 -33.88564 -33.22088 -32.03389 -31.65648 -30.69490 -29.17551 -26.76090 -25.49103 -24.65642 -24.30224 -23.28363 -21.29883 -19.89477 -19.44156 -18.88687 -18.38690 -18.16015 -17.83706 -16.53174 -16.32078 -16.18102 -15.72987 -15.61584 -15.32799 -15.13802 -14.76025 -14.57441 -14.43892 -14.03952 -13.86688 -13.73870 -13.59815 -13.20569 -13.12540 -12.84060 -12.59816 -12.38767 -12.14551 -12.07211 -11.88747 -11.56564 -11.21860 -11.01233 -10.78089 -10.73288 -10.68398 -10.59689 -10.21271 -9.97453 -9.69958 -9.57155 -9.32677 -8.59373 -8.23386 -8.16671 -6.30837 -3.82321 -0.13888 0.38292 2.18221 2.64206 3.02508 3.06545 3.15020 3.18807 3.25282 3.53800 3.74097 4.00124 4.04445 4.09155 4.11479 4.24553 4.50968 4.64987 4.74041 4.91195 4.99719 5.08539 5.15833 5.19046 5.21561 5.36484 5.48200 5.54095 5.65393 5.71053 5.79997 5.81778 5.87058 5.89795 5.91835 6.14373 6.29033 6.38846 6.85472 7.03553 7.23675 7.50924 7.58275 7.81920 8.14743 8.59808 8.95222 9.42594 9.82654 10.82255 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.001793 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.183723 B =15614.939341 C =16141.495101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.077 3.923 3 H 0.048 0.952 4 N -0.656 5.656 5 C 0.048 3.952 6 C 0.450 3.550 7 O -0.563 6.563 8 N -0.591 5.591 9 C -0.305 4.305 10 H 0.120 0.880 11 C 0.041 3.959 12 N -0.881 5.881 13 Si 0.880 3.120 14 H -0.271 1.271 15 H -0.277 1.277 16 H -0.269 1.269 17 C 0.139 3.861 18 H 0.090 0.910 19 C -0.158 4.158 20 N -0.701 5.701 21 C 0.572 3.428 22 O -0.528 6.528 23 C 0.069 3.931 24 C -0.081 4.081 25 C -0.115 4.115 26 C 0.070 3.930 27 F -0.124 7.124 28 C 0.077 3.923 29 N -0.431 5.431 30 H 0.060 0.940 31 H 0.071 0.929 32 H 0.052 0.948 33 H 0.353 0.647 34 H 0.088 0.912 35 H 0.045 0.955 36 H 0.370 0.630 37 H 0.273 0.727 38 H 0.054 0.946 39 H 0.061 0.939 40 H 0.084 0.916 41 H 0.410 0.590 42 H 0.161 0.839 43 H 0.157 0.843 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.835 8.248 31.084 33.351 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.034 4.034 3 H 0.066 0.934 4 N -0.290 5.290 5 C -0.085 4.085 6 C 0.236 3.764 7 O -0.445 6.445 8 N -0.230 5.230 9 C -0.434 4.434 10 H 0.137 0.863 11 C -0.162 4.162 12 N -0.521 5.521 13 Si 0.706 3.294 14 H -0.197 1.197 15 H -0.202 1.202 16 H -0.195 1.195 17 C 0.035 3.965 18 H 0.108 0.892 19 C -0.216 4.216 20 N -0.353 5.353 21 C 0.356 3.644 22 O -0.404 6.404 23 C -0.069 4.069 24 C -0.102 4.102 25 C -0.141 4.141 26 C 0.048 3.952 27 F -0.102 7.102 28 C -0.085 4.085 29 N -0.141 5.141 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.071 0.929 33 H 0.174 0.826 34 H 0.106 0.894 35 H 0.063 0.937 36 H 0.203 0.797 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.080 0.920 40 H 0.103 0.897 41 H 0.249 0.751 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -8.833 6.803 29.950 31.958 hybrid contribution 0.256 2.443 0.944 2.632 sum -8.577 9.247 30.895 33.370 Atomic orbital electron populations 1.21899 0.94276 1.03091 1.01083 1.21721 0.96708 0.95886 0.89091 0.93369 1.60184 1.35074 1.31593 1.02151 1.21772 1.01426 0.93997 0.91306 1.19678 0.84534 0.88212 0.83993 1.90572 1.53741 1.15817 1.84375 1.42202 1.60135 1.11078 1.09598 1.19433 1.40092 0.98012 0.85816 0.86257 1.25038 0.97499 0.98395 0.95238 1.69619 1.45149 1.36515 1.00829 0.86672 0.78977 0.85173 0.78561 1.19681 1.20182 1.19487 1.21179 0.98789 0.93654 0.82903 0.89223 1.22136 1.02278 0.94290 1.02914 1.46014 1.26093 1.55706 1.07531 1.17704 0.84204 0.79899 0.82628 1.90827 1.21834 1.42623 1.85098 1.21310 0.92416 0.98591 0.94573 1.22092 1.00968 0.96420 0.90671 1.21732 0.94305 0.96996 1.01098 1.19088 0.93790 0.96882 0.85438 1.91568 1.83380 1.81362 1.53905 1.22960 1.00761 0.98460 0.86315 1.67602 1.09009 1.05959 1.31576 0.92048 0.91046 0.92944 0.82640 0.89374 0.93664 0.79716 0.91620 0.92739 0.91992 0.89737 0.75147 0.82161 0.82572 0.80661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.93 37.16 0.33 -1.09 16 2 C 0.08 0.84 2.66 -67.71 -0.18 0.66 16 3 H 0.05 0.51 7.80 -51.93 -0.40 0.11 16 4 N -0.66 -9.52 5.14 -107.99 -0.55 -10.07 16 5 C 0.05 0.76 5.96 -4.98 -0.03 0.73 16 6 C 0.45 10.04 7.82 -10.99 -0.09 9.95 16 7 O -0.56 -14.90 15.78 5.54 0.09 -14.81 16 8 N -0.59 -13.94 5.09 -10.96 -0.06 -13.99 16 9 C -0.30 -8.60 10.16 -14.93 -0.15 -8.75 16 10 H 0.12 3.85 7.39 -52.49 -0.39 3.46 16 11 C 0.04 1.13 5.50 -17.47 -0.10 1.03 16 12 N -0.88 -25.72 13.96 55.50 0.77 -24.95 16 13 Si 0.88 19.28 27.74 -169.99 -4.71 14.57 16 14 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 15 H -0.28 -6.09 7.11 56.52 0.40 -5.69 16 16 H -0.27 -5.37 6.52 56.52 0.37 -5.00 16 17 C 0.14 1.51 2.30 -67.93 -0.16 1.35 16 18 H 0.09 1.09 7.58 -51.93 -0.39 0.69 16 19 C -0.16 -1.79 9.02 37.16 0.33 -1.45 16 20 N -0.70 -6.75 4.98 -54.68 -0.27 -7.03 16 21 C 0.57 6.16 7.77 -12.23 -0.10 6.06 16 22 O -0.53 -7.16 15.98 5.34 0.09 -7.08 16 23 C 0.07 0.60 6.75 -83.02 -0.56 0.04 16 24 C -0.08 -0.55 9.63 -39.07 -0.38 -0.93 16 25 C -0.11 -0.59 10.15 -39.25 -0.40 -0.99 16 26 C 0.07 0.40 7.36 -39.10 -0.29 0.11 16 27 F -0.12 -0.75 17.28 2.25 0.04 -0.71 16 28 C 0.08 0.44 11.17 -17.48 -0.20 0.25 16 29 N -0.43 -3.33 9.53 -9.75 -0.09 -3.42 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.07 0.75 6.57 -51.93 -0.34 0.41 16 32 H 0.05 0.40 6.29 -51.93 -0.33 0.07 16 33 H 0.35 5.40 7.62 -39.29 -0.30 5.10 16 34 H 0.09 1.26 7.44 -51.93 -0.39 0.87 16 35 H 0.05 0.63 8.06 -51.93 -0.42 0.21 16 36 H 0.37 7.65 5.76 -40.82 -0.24 7.42 16 37 H 0.27 7.36 8.31 -40.82 -0.34 7.02 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.06 0.66 6.57 -51.93 -0.34 0.32 16 40 H 0.08 1.07 7.17 -51.93 -0.37 0.69 16 41 H 0.41 3.39 5.90 -40.82 -0.24 3.15 16 42 H 0.16 0.98 7.64 -52.48 -0.40 0.58 16 43 H 0.16 0.41 8.06 -52.48 -0.42 -0.01 16 44 H 0.18 0.56 8.06 -52.49 -0.42 0.13 16 LS Contribution 373.17 15.07 5.62 5.62 Total: -1.00 -33.89 373.17 -6.40 -40.29 By element: Atomic # 1 Polarization: 19.96 SS G_CDS: -5.37 Total: 14.59 kcal Atomic # 6 Polarization: 8.93 SS G_CDS: -1.95 Total: 6.98 kcal Atomic # 7 Polarization: -59.25 SS G_CDS: -0.20 Total: -59.46 kcal Atomic # 8 Polarization: -22.06 SS G_CDS: 0.17 Total: -21.89 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 0.04 Total: -0.71 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.57 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -33.89 -6.40 -40.29 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282121821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.859 kcal (2) G-P(sol) polarization free energy of solvation -33.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.748 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.397 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.286 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.145 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds