Wall clock time and date at job start Tue Mar 31 2020 20:40:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09000 * 109.47140 * 2 1 4 4 N 1.46902 * 109.47489 * 239.99592 * 2 1 3 5 5 C 1.46901 * 110.99865 * 85.00085 * 4 2 1 6 6 C 1.50697 * 109.47446 * 180.02562 * 5 4 2 7 7 O 1.21296 * 119.99612 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00161 * 180.02562 * 6 5 4 9 9 C 1.37103 * 119.99987 * 180.02562 * 8 6 5 10 10 H 1.07996 * 119.99663 * 359.97438 * 9 8 6 11 11 C 1.38945 * 120.00203 * 179.97438 * 9 8 6 12 12 N 1.31407 * 120.00373 * 179.97438 * 11 9 8 13 13 Si 1.86808 * 119.99867 * 359.97438 * 11 9 8 14 14 H 1.48496 * 109.47089 * 90.00150 * 13 11 9 15 15 H 1.48493 * 109.47202 * 210.00082 * 13 11 9 16 16 H 1.48499 * 109.47002 * 329.99946 * 13 11 9 17 17 C 1.53006 * 109.47164 * 119.99948 * 2 1 3 18 18 H 1.08997 * 109.47395 * 185.00408 * 17 2 1 19 19 C 1.52999 * 109.47054 * 64.99950 * 17 2 1 20 20 N 1.46498 * 109.46687 * 304.99949 * 17 2 1 21 21 C 1.34781 * 119.99897 * 204.99896 * 20 17 2 22 22 O 1.21526 * 119.99770 * 0.02562 * 21 20 17 23 23 C 1.48050 * 119.99976 * 180.02562 * 21 20 17 24 24 C 1.39380 * 119.69162 * 179.72876 * 23 21 20 25 25 C 1.38461 * 119.09528 * 179.75338 * 24 23 21 26 26 C 1.38903 * 118.46628 * 0.51013 * 25 24 23 27 27 F 1.35107 * 120.34913 * 179.75110 * 26 25 24 28 28 C 1.38871 * 119.29747 * 359.72909 * 26 25 24 29 29 N 1.31455 * 120.85971 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.46777 * 60.00573 * 1 2 3 31 31 H 1.09000 * 109.47140 * 179.97438 * 1 2 3 32 32 H 1.09001 * 109.47375 * 300.00017 * 1 2 3 33 33 H 1.00897 * 110.99993 * 208.95314 * 4 2 1 34 34 H 1.09005 * 109.47362 * 300.00272 * 5 4 2 35 35 H 1.09000 * 109.47455 * 59.99836 * 5 4 2 36 36 H 0.96994 * 119.99986 * 359.97438 * 8 6 5 37 37 H 0.97002 * 120.00276 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.47069 * 180.02562 * 19 17 2 39 39 H 1.09001 * 109.47018 * 300.00144 * 19 17 2 40 40 H 1.08995 * 109.47070 * 60.00530 * 19 17 2 41 41 H 0.96993 * 120.00521 * 25.00101 * 20 17 2 42 42 H 1.08005 * 120.45184 * 359.97438 * 24 23 21 43 43 H 1.08003 * 120.76938 * 180.21612 * 25 24 23 44 44 H 1.08000 * 119.57166 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6926 -1.1994 5 6 2.0826 0.2225 -2.3469 6 6 2.5875 -0.5219 -3.5560 7 8 2.8679 -1.6989 -3.4701 8 7 2.7284 0.1204 -4.7324 9 6 3.1873 -0.5570 -5.8326 10 1 3.4362 -1.6051 -5.7563 11 6 3.3322 0.1049 -7.0456 12 7 3.7725 -0.5441 -8.0999 13 14 2.9009 1.9178 -7.1776 14 1 4.1018 2.7358 -6.8714 15 1 2.4366 2.2170 -8.5560 16 1 1.8216 2.2415 -6.2105 17 6 2.0400 -0.7213 1.2493 18 1 3.1263 -0.6443 1.2953 19 6 1.6352 -2.1955 1.1880 20 7 1.4558 -0.1036 2.4423 21 6 2.0912 -0.1937 3.6276 22 8 3.1489 -0.7869 3.7064 23 6 1.5006 0.4301 4.8334 24 6 2.1603 0.3281 6.0569 25 6 1.5994 0.9205 7.1757 26 6 0.3891 1.5875 7.0351 27 9 -0.1946 2.1749 8.1027 28 6 -0.2143 1.6446 5.7857 29 7 0.3449 1.0765 4.7403 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8900 33 1 2.9174 -1.1205 -1.0286 34 1 1.0871 0.6162 -2.5526 35 1 2.7589 1.0461 -2.1182 36 1 2.5045 1.0616 -4.8010 37 1 3.8739 -0.0819 -8.9467 38 1 1.9982 -2.7092 2.0782 39 1 0.5489 -2.2724 1.1421 40 1 2.0699 -2.6550 0.3004 41 1 0.6118 0.3702 2.3794 42 1 3.0980 -0.2026 6.1306 43 1 2.0892 0.8612 8.1365 44 1 -1.1551 2.1624 5.6712 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282121821.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:22 Heat of formation + Delta-G solvation = -96.316467 kcal Electronic energy + Delta-G solvation = -27986.351734 eV Core-core repulsion = 23659.523710 eV Total energy + Delta-G solvation = -4326.828024 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.12824 -41.78730 -40.53029 -40.11836 -38.51958 -36.09780 -35.43824 -33.79412 -33.69815 -32.71545 -31.55330 -30.06108 -28.26665 -26.24352 -25.84739 -25.06243 -24.31087 -22.06638 -21.29148 -20.77922 -20.33048 -19.52614 -18.67528 -18.43254 -17.67851 -17.24509 -16.99149 -16.88667 -16.74078 -16.42267 -16.21392 -15.81623 -15.52462 -15.24645 -15.09521 -14.90145 -14.72853 -14.46859 -14.37967 -14.31880 -14.00520 -13.68032 -13.62271 -13.47790 -13.11990 -13.06428 -12.86019 -12.52286 -12.40382 -11.96972 -11.94962 -11.68121 -11.49995 -11.48703 -11.13447 -10.82803 -10.43592 -10.32114 -10.23676 -10.05427 -9.37092 -8.40095 -6.01045 -0.67844 -0.04932 1.31146 1.36565 1.45581 1.50555 1.86674 1.97540 2.24118 2.59364 2.72035 2.81188 3.01462 3.16463 3.39912 3.56142 3.62598 3.67701 3.74799 3.92872 4.10231 4.14771 4.21285 4.43350 4.46085 4.56612 4.58925 4.64702 4.70414 4.76047 4.81583 4.85614 4.97433 5.04651 5.28582 5.37503 5.41141 5.51072 5.54522 5.90965 6.03817 6.24629 6.33155 6.56469 6.60888 6.89479 7.04621 7.41163 7.98018 8.77545 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.025701 B = 0.001793 C = 0.001734 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.183723 B =15614.939341 C =16141.495101 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.083 3.917 3 H 0.064 0.936 4 N -0.671 5.671 5 C 0.062 3.938 6 C 0.449 3.551 7 O -0.613 6.613 8 N -0.591 5.591 9 C -0.329 4.329 10 H 0.055 0.945 11 C -0.016 4.016 12 N -0.935 5.935 13 Si 0.965 3.035 14 H -0.258 1.258 15 H -0.276 1.276 16 H -0.230 1.230 17 C 0.146 3.854 18 H 0.074 0.926 19 C -0.151 4.151 20 N -0.690 5.690 21 C 0.569 3.431 22 O -0.564 6.564 23 C 0.050 3.950 24 C -0.084 4.084 25 C -0.106 4.106 26 C 0.072 3.928 27 F -0.123 7.123 28 C 0.078 3.922 29 N -0.440 5.440 30 H 0.063 0.937 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.345 0.655 34 H 0.117 0.883 35 H 0.077 0.923 36 H 0.390 0.610 37 H 0.279 0.721 38 H 0.045 0.955 39 H 0.069 0.931 40 H 0.067 0.933 41 H 0.419 0.581 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.203 0.797 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.916 12.080 33.408 37.165 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.027 4.027 3 H 0.082 0.918 4 N -0.305 5.305 5 C -0.070 4.070 6 C 0.237 3.763 7 O -0.497 6.497 8 N -0.233 5.233 9 C -0.458 4.458 10 H 0.073 0.927 11 C -0.215 4.215 12 N -0.576 5.576 13 Si 0.785 3.215 14 H -0.182 1.182 15 H -0.201 1.201 16 H -0.153 1.153 17 C 0.041 3.959 18 H 0.092 0.908 19 C -0.209 4.209 20 N -0.343 5.343 21 C 0.355 3.645 22 O -0.443 6.443 23 C -0.088 4.088 24 C -0.105 4.105 25 C -0.132 4.132 26 C 0.050 3.950 27 F -0.102 7.102 28 C -0.084 4.084 29 N -0.151 5.151 30 H 0.082 0.918 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.164 0.836 34 H 0.134 0.866 35 H 0.095 0.905 36 H 0.225 0.775 37 H 0.088 0.912 38 H 0.064 0.936 39 H 0.088 0.912 40 H 0.086 0.914 41 H 0.259 0.741 42 H 0.179 0.821 43 H 0.200 0.800 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -10.951 10.654 32.305 35.736 hybrid contribution 0.899 1.128 0.339 1.482 sum -10.052 11.783 32.644 36.132 Atomic orbital electron populations 1.21905 0.92920 1.02898 1.02428 1.21743 0.97534 0.96055 0.87324 0.91816 1.60204 1.34820 1.32230 1.03262 1.21694 1.03163 0.93723 0.88428 1.20974 0.82238 0.87926 0.85186 1.90554 1.55218 1.18550 1.85387 1.42022 1.60622 1.11820 1.08829 1.19007 1.42276 0.96078 0.88418 0.92722 1.26129 0.96441 1.05056 0.93847 1.69807 1.46375 1.39577 1.01805 0.85357 0.80208 0.76456 0.79446 1.18231 1.20106 1.15274 1.20979 0.98020 0.93336 0.83591 0.90756 1.22043 1.02570 0.94699 1.01619 1.45880 1.26207 1.55341 1.06908 1.18063 0.83752 0.79330 0.83365 1.90804 1.23448 1.44310 1.85716 1.21064 0.93473 1.00083 0.94145 1.22155 1.01080 0.96638 0.90619 1.21978 0.93973 0.95693 1.01587 1.19169 0.93836 0.96539 0.85428 1.91576 1.83381 1.81318 1.53910 1.23386 1.01376 0.97764 0.85874 1.67565 1.08724 1.06364 1.32447 0.91823 0.92052 0.90466 0.83578 0.86557 0.90483 0.77465 0.91184 0.93604 0.91160 0.91438 0.74110 0.82053 0.79983 0.78072 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.39 8.93 71.98 0.64 -1.75 16 2 C 0.08 1.65 2.66 44.92 0.12 1.77 16 3 H 0.06 1.12 7.80 -2.39 -0.02 1.10 16 4 N -0.67 -18.67 5.14 -495.56 -2.55 -21.21 16 5 C 0.06 1.81 5.96 85.56 0.51 2.32 16 6 C 0.45 19.96 7.82 87.66 0.69 20.65 16 7 O -0.61 -33.74 15.78 -3.08 -0.05 -33.79 16 8 N -0.59 -27.62 5.09 -306.99 -1.56 -29.18 16 9 C -0.33 -19.26 10.16 84.04 0.85 -18.41 16 10 H 0.05 3.83 7.39 -2.91 -0.02 3.81 16 11 C -0.02 -0.90 5.50 84.93 0.47 -0.44 16 12 N -0.93 -56.54 13.96 21.66 0.30 -56.24 16 13 Si 0.97 38.57 27.74 68.60 1.90 40.47 16 14 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 15 H -0.28 -10.98 7.11 99.48 0.71 -10.28 16 16 H -0.23 -7.64 6.52 99.48 0.65 -6.99 16 17 C 0.15 3.05 2.30 44.99 0.10 3.16 16 18 H 0.07 1.82 7.58 -2.39 -0.02 1.80 16 19 C -0.15 -3.46 9.02 71.98 0.65 -2.81 16 20 N -0.69 -12.46 4.98 -445.21 -2.22 -14.67 16 21 C 0.57 12.01 7.77 86.85 0.67 12.69 16 22 O -0.56 -15.59 15.98 -3.80 -0.06 -15.65 16 23 C 0.05 0.80 6.75 41.89 0.28 1.08 16 24 C -0.08 -1.04 9.63 22.60 0.22 -0.82 16 25 C -0.11 -0.85 10.15 22.48 0.23 -0.62 16 26 C 0.07 0.64 7.36 22.58 0.17 0.80 16 27 F -0.12 -1.16 17.28 44.97 0.78 -0.38 16 28 C 0.08 0.70 11.17 84.90 0.95 1.65 16 29 N -0.44 -5.89 9.53 -184.75 -1.76 -7.66 16 30 H 0.06 1.06 7.45 -2.39 -0.02 1.04 16 31 H 0.06 1.16 6.57 -2.39 -0.02 1.15 16 32 H 0.08 0.90 6.29 -2.39 -0.02 0.88 16 33 H 0.34 10.61 7.62 -89.70 -0.68 9.93 16 34 H 0.12 2.82 7.44 -2.38 -0.02 2.80 16 35 H 0.08 1.83 8.06 -2.39 -0.02 1.81 16 36 H 0.39 14.96 5.76 -92.71 -0.53 14.42 16 37 H 0.28 15.39 8.31 -92.71 -0.77 14.62 16 38 H 0.04 1.11 8.14 -2.39 -0.02 1.09 16 39 H 0.07 1.46 6.57 -2.39 -0.02 1.45 16 40 H 0.07 1.78 7.17 -2.39 -0.02 1.76 16 41 H 0.42 5.99 5.90 -92.71 -0.55 5.44 16 42 H 0.16 1.90 7.64 -2.91 -0.02 1.88 16 43 H 0.18 0.42 8.06 -2.91 -0.02 0.39 16 44 H 0.20 0.60 8.06 -2.91 -0.02 0.58 16 Total: -1.00 -80.00 373.17 0.60 -79.40 By element: Atomic # 1 Polarization: 40.37 SS G_CDS: -0.74 Total: 39.64 kcal Atomic # 6 Polarization: 12.73 SS G_CDS: 6.55 Total: 19.28 kcal Atomic # 7 Polarization: -121.18 SS G_CDS: -7.78 Total: -128.96 kcal Atomic # 8 Polarization: -49.33 SS G_CDS: -0.11 Total: -49.44 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.78 Total: -0.38 kcal Atomic # 14 Polarization: 38.57 SS G_CDS: 1.90 Total: 40.47 kcal Total: -80.00 0.60 -79.40 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282121821.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.916 kcal (2) G-P(sol) polarization free energy of solvation -80.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.916 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.316 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds