Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 N 1.46496 * 109.46953 * 119.99646 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00286 * 4 2 1 6 6 O 1.21529 * 120.00383 * 359.97438 * 5 4 2 7 7 C 1.48056 * 119.99968 * 180.02562 * 5 4 2 8 8 C 1.39386 * 119.69215 * 180.02562 * 7 5 4 9 9 C 1.38461 * 119.09582 * 179.97438 * 8 7 5 10 10 C 1.38905 * 118.46339 * 359.97438 * 9 8 7 11 11 F 1.35104 * 120.34573 * 179.97438 * 10 9 8 12 12 C 1.38870 * 119.30260 * 0.02562 * 10 9 8 13 13 N 1.31463 * 120.85642 * 359.71558 * 12 10 9 14 14 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 15 15 H 1.08998 * 109.46862 * 300.00565 * 14 2 1 16 16 C 1.52997 * 109.47482 * 179.97438 * 14 2 1 17 17 N 1.46906 * 109.47164 * 59.99534 * 14 2 1 18 18 C 1.46897 * 111.00172 * 205.00386 * 17 14 2 19 19 C 1.50697 * 109.46908 * 180.02562 * 18 17 14 20 20 O 1.21287 * 120.00522 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99988 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00145 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99696 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00073 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99612 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00207 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46718 * 59.99961 * 26 24 22 28 28 H 1.48501 * 109.47084 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47029 * 300.00433 * 26 24 22 30 30 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 31 31 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 33 33 H 0.97002 * 120.00183 * 95.00754 * 4 2 1 34 34 H 1.08002 * 120.44899 * 359.97345 * 8 7 5 35 35 H 1.07991 * 120.76926 * 180.02562 * 9 8 7 36 36 H 1.08004 * 119.57185 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 16 14 2 38 38 H 1.09001 * 109.46832 * 299.99974 * 16 14 2 39 39 H 1.09004 * 109.47261 * 179.97438 * 16 14 2 40 40 H 1.00896 * 110.99793 * 328.95910 * 17 14 2 41 41 H 1.09005 * 109.47066 * 299.99968 * 18 17 14 42 42 H 1.09001 * 109.47085 * 59.99954 * 18 17 14 43 43 H 0.97005 * 119.99644 * 359.97438 * 21 19 18 44 44 H 0.97005 * 119.99274 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8583 1.1611 2.4117 7 6 2.6409 -0.7160 3.5659 8 6 2.7710 -0.0145 4.7634 9 6 3.2337 -0.6794 5.8863 10 6 3.5510 -2.0270 5.7739 11 9 4.0062 -2.7128 6.8453 12 6 3.3965 -2.6618 4.5485 13 7 2.9501 -2.0052 3.5006 14 6 2.0400 -0.7212 -1.2492 15 1 1.6766 -1.7488 -1.2492 16 6 3.5700 -0.7206 -1.2495 17 7 1.5503 -0.0288 -2.4487 18 6 1.4875 -0.9438 -3.5961 19 6 0.9826 -0.1994 -4.8052 20 8 0.7022 0.9774 -4.7194 21 7 0.8417 -0.8418 -5.9817 22 6 0.3819 -0.1647 -7.0815 23 1 0.1322 0.8832 -7.0051 24 6 0.2371 -0.8268 -8.2946 25 7 0.5414 -2.1018 -8.3876 26 14 -0.3901 0.0955 -9.7930 27 1 0.5308 1.2180 -10.1046 28 1 -0.4528 -0.8294 -10.9531 29 1 -1.7464 0.6313 -9.5125 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2491 -1.6317 1.1527 34 1 2.5144 1.0333 4.8145 35 1 3.3445 -0.1625 6.8280 36 1 3.6424 -3.7094 4.4560 37 1 3.9337 -1.2342 -0.3595 38 1 3.9329 0.3072 -1.2497 39 1 3.9334 -1.2349 -2.1393 40 1 0.6527 0.3992 -2.2779 41 1 2.4830 -1.3375 -3.8017 42 1 0.8112 -1.7675 -3.3673 43 1 1.0656 -1.7831 -6.0502 44 1 0.4407 -2.5639 -9.2346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282121822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = -78.007717 kcal Electronic energy + Delta-G solvation = -27918.031209 eV Core-core repulsion = 23591.997112 eV Total energy + Delta-G solvation = -4326.034097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.65187 -41.11399 -39.59406 -38.41590 -37.25814 -34.58101 -33.83049 -33.18014 -31.96703 -31.23564 -30.43089 -29.81721 -26.42383 -25.32427 -24.53459 -24.22809 -23.15352 -21.09765 -20.56446 -19.31246 -18.71569 -18.13807 -17.96861 -17.77990 -16.51210 -16.37068 -16.31873 -15.62551 -15.38631 -15.37234 -14.79698 -14.50969 -14.42761 -14.24581 -14.06313 -13.84340 -13.81140 -13.53363 -13.45697 -13.20633 -12.95248 -12.46276 -12.36542 -11.90554 -11.69031 -11.59395 -11.44521 -11.32798 -11.01864 -10.73160 -10.65652 -10.63059 -10.43558 -10.21137 -10.17719 -9.67101 -9.49350 -9.30529 -8.45210 -8.10003 -7.95455 -6.41049 -3.81796 -0.10993 0.41030 2.21421 2.66623 3.20982 3.21934 3.26553 3.27929 3.31214 3.56769 3.91334 4.03220 4.07548 4.12059 4.23936 4.35805 4.56466 4.68469 4.83461 5.02269 5.11106 5.15029 5.18537 5.21950 5.25764 5.36864 5.49062 5.63080 5.70463 5.79034 5.83402 5.87391 5.96458 5.97504 6.12137 6.20353 6.26328 6.36275 6.88546 7.18263 7.26675 7.55834 7.63862 7.85267 8.06777 8.61922 9.18504 9.54817 10.06346 10.76581 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034453 B = 0.001684 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.503697 B =16624.990070 C =17106.631859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.139 3.861 3 H 0.102 0.898 4 N -0.698 5.698 5 C 0.573 3.427 6 O -0.527 6.527 7 C 0.070 3.930 8 C -0.081 4.081 9 C -0.115 4.115 10 C 0.070 3.930 11 F -0.124 7.124 12 C 0.077 3.923 13 N -0.430 5.430 14 C 0.078 3.922 15 H 0.048 0.952 16 C -0.140 4.140 17 N -0.660 5.660 18 C 0.051 3.949 19 C 0.440 3.560 20 O -0.582 6.582 21 N -0.563 5.563 22 C -0.300 4.300 23 H 0.103 0.897 24 C 0.022 3.978 25 N -0.902 5.902 26 Si 0.931 3.069 27 H -0.273 1.273 28 H -0.285 1.285 29 H -0.274 1.274 30 H 0.076 0.924 31 H 0.057 0.943 32 H 0.065 0.935 33 H 0.410 0.590 34 H 0.161 0.839 35 H 0.156 0.844 36 H 0.176 0.824 37 H 0.053 0.947 38 H 0.064 0.936 39 H 0.059 0.941 40 H 0.351 0.649 41 H 0.087 0.913 42 H 0.044 0.956 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.155 -4.621 28.670 29.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.034 3.966 3 H 0.120 0.880 4 N -0.349 5.349 5 C 0.357 3.643 6 O -0.403 6.403 7 C -0.068 4.068 8 C -0.102 4.102 9 C -0.141 4.141 10 C 0.048 3.952 11 F -0.102 7.102 12 C -0.085 4.085 13 N -0.141 5.141 14 C -0.033 4.033 15 H 0.066 0.934 16 C -0.198 4.198 17 N -0.296 5.296 18 C -0.081 4.081 19 C 0.226 3.774 20 O -0.466 6.466 21 N -0.200 5.200 22 C -0.429 4.429 23 H 0.120 0.880 24 C -0.179 4.179 25 N -0.543 5.543 26 Si 0.758 3.242 27 H -0.199 1.199 28 H -0.210 1.210 29 H -0.199 1.199 30 H 0.094 0.906 31 H 0.076 0.924 32 H 0.084 0.916 33 H 0.246 0.754 34 H 0.178 0.822 35 H 0.174 0.826 36 H 0.193 0.807 37 H 0.072 0.928 38 H 0.083 0.917 39 H 0.078 0.922 40 H 0.174 0.826 41 H 0.105 0.895 42 H 0.062 0.938 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 6.239 -3.277 27.596 28.482 hybrid contribution -0.574 -1.077 0.415 1.289 sum 5.665 -4.354 28.011 28.908 Atomic orbital electron populations 1.22267 0.94934 1.02404 1.03299 1.21176 0.94140 0.98317 0.82939 0.87967 1.45833 1.65530 1.14671 1.08910 1.17670 0.78115 0.86030 0.82481 1.90831 1.50136 1.14833 1.84456 1.21316 1.00406 0.90331 0.94791 1.22091 0.94898 1.02477 0.90707 1.21726 0.98756 0.92751 1.00913 1.19089 0.99343 0.91332 0.85467 1.91566 1.85972 1.79184 1.53517 1.22963 0.97649 1.01339 0.86541 1.67609 1.08114 1.07938 1.30427 1.21728 0.96610 0.95914 0.89035 0.93412 1.21815 0.94084 1.02788 1.01146 1.60183 1.35335 1.31869 1.02246 1.21725 1.01393 0.93841 0.91171 1.19788 0.84985 0.88203 0.84436 1.90527 1.55264 1.16114 1.84742 1.41852 1.57769 1.12412 1.07966 1.19660 1.40003 0.96445 0.86827 0.87951 1.25262 0.97658 0.95785 0.99231 1.69610 1.48630 1.08857 1.27245 0.85912 0.79421 0.78835 0.80015 1.19884 1.20998 1.19924 0.90570 0.92353 0.91631 0.75390 0.82168 0.82600 0.80676 0.92826 0.91729 0.92221 0.82586 0.89500 0.93782 0.77467 0.91841 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.89 9.25 37.16 0.34 -1.55 16 2 C 0.14 1.57 2.29 -67.94 -0.16 1.42 16 3 H 0.10 1.37 7.58 -51.93 -0.39 0.97 16 4 N -0.70 -6.86 4.37 -54.69 -0.24 -7.10 16 5 C 0.57 6.25 7.77 -12.23 -0.10 6.16 16 6 O -0.53 -7.25 15.98 5.34 0.09 -7.16 16 7 C 0.07 0.62 6.75 -83.02 -0.56 0.06 16 8 C -0.08 -0.56 9.63 -39.07 -0.38 -0.94 16 9 C -0.12 -0.61 10.15 -39.25 -0.40 -1.01 16 10 C 0.07 0.41 7.36 -39.10 -0.29 0.12 16 11 F -0.12 -0.78 17.28 2.25 0.04 -0.74 16 12 C 0.08 0.46 11.17 -17.48 -0.20 0.27 16 13 N -0.43 -3.40 9.53 -9.74 -0.09 -3.49 16 14 C 0.08 0.93 2.28 -67.71 -0.15 0.77 16 15 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 16 C -0.14 -1.60 9.26 37.16 0.34 -1.26 16 17 N -0.66 -10.42 5.93 -108.00 -0.64 -11.06 16 18 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 19 C 0.44 10.34 7.82 -10.98 -0.09 10.26 16 20 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 21 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 22 C -0.30 -8.36 9.68 -14.93 -0.14 -8.51 16 23 H 0.10 2.99 7.16 -52.49 -0.38 2.62 16 24 C 0.02 0.59 5.50 -17.46 -0.10 0.50 16 25 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 26 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 27 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 28 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 29 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 30 H 0.08 0.90 6.21 -51.93 -0.32 0.57 16 31 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 32 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.41 3.43 7.71 -40.82 -0.31 3.12 16 34 H 0.16 1.01 7.64 -52.49 -0.40 0.61 16 35 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 36 H 0.18 0.60 8.06 -52.48 -0.42 0.18 16 37 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 38 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 39 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 40 H 0.35 5.72 5.87 -39.29 -0.23 5.49 16 41 H 0.09 1.39 7.44 -51.93 -0.39 1.01 16 42 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 43 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 44 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -32.82 380.06 -6.87 -39.70 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.59 Total: 14.66 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.89 Total: 7.14 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.31 Total: -59.69 kcal Atomic # 8 Polarization: -23.03 SS G_CDS: 0.17 Total: -22.86 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 0.04 Total: -0.74 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.82 -6.87 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282121822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.312 kcal (2) G-P(sol) polarization free energy of solvation -32.821 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.134 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.008 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds