Wall clock time and date at job start Tue Mar 31 2020 20:40:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09001 * 109.46832 * 2 1 4 4 N 1.46496 * 109.46953 * 119.99646 * 2 1 3 5 5 C 1.34777 * 120.00258 * 275.00286 * 4 2 1 6 6 O 1.21529 * 120.00383 * 359.97438 * 5 4 2 7 7 C 1.48056 * 119.99968 * 180.02562 * 5 4 2 8 8 C 1.39386 * 119.69215 * 180.02562 * 7 5 4 9 9 C 1.38461 * 119.09582 * 179.97438 * 8 7 5 10 10 C 1.38905 * 118.46339 * 359.97438 * 9 8 7 11 11 F 1.35104 * 120.34573 * 179.97438 * 10 9 8 12 12 C 1.38870 * 119.30260 * 0.02562 * 10 9 8 13 13 N 1.31463 * 120.85642 * 359.71558 * 12 10 9 14 14 C 1.52992 * 109.47482 * 240.00026 * 2 1 3 15 15 H 1.08998 * 109.46862 * 300.00565 * 14 2 1 16 16 C 1.52997 * 109.47482 * 179.97438 * 14 2 1 17 17 N 1.46906 * 109.47164 * 59.99534 * 14 2 1 18 18 C 1.46897 * 111.00172 * 205.00386 * 17 14 2 19 19 C 1.50697 * 109.46908 * 180.02562 * 18 17 14 20 20 O 1.21287 * 120.00522 * 359.97438 * 19 18 17 21 21 N 1.34783 * 119.99988 * 180.02562 * 19 18 17 22 22 C 1.37094 * 120.00145 * 179.97438 * 21 19 18 23 23 H 1.07998 * 119.99696 * 359.97438 * 22 21 19 24 24 C 1.38952 * 120.00073 * 179.97438 * 22 21 19 25 25 N 1.31416 * 119.99612 * 359.97438 * 24 22 21 26 26 Si 1.86796 * 120.00207 * 179.97438 * 24 22 21 27 27 H 1.48497 * 109.46718 * 59.99961 * 26 24 22 28 28 H 1.48501 * 109.47084 * 179.97438 * 26 24 22 29 29 H 1.48501 * 109.47029 * 300.00433 * 26 24 22 30 30 H 1.09002 * 109.47153 * 60.00191 * 1 2 3 31 31 H 1.09001 * 109.47289 * 180.02562 * 1 2 3 32 32 H 1.09004 * 109.47261 * 300.00019 * 1 2 3 33 33 H 0.97002 * 120.00183 * 95.00754 * 4 2 1 34 34 H 1.08002 * 120.44899 * 359.97345 * 8 7 5 35 35 H 1.07991 * 120.76926 * 180.02562 * 9 8 7 36 36 H 1.08004 * 119.57185 * 179.97438 * 12 10 9 37 37 H 1.09002 * 109.47153 * 59.99783 * 16 14 2 38 38 H 1.09001 * 109.46832 * 299.99974 * 16 14 2 39 39 H 1.09004 * 109.47261 * 179.97438 * 16 14 2 40 40 H 1.00896 * 110.99793 * 328.95910 * 17 14 2 41 41 H 1.09005 * 109.47066 * 299.99968 * 18 17 14 42 42 H 1.09001 * 109.47085 * 59.99954 * 18 17 14 43 43 H 0.97005 * 119.99644 * 359.97438 * 21 19 18 44 44 H 0.97005 * 119.99274 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0183 -0.6905 1.1962 5 6 2.1469 -0.0182 2.3572 6 8 1.8583 1.1611 2.4117 7 6 2.6409 -0.7160 3.5659 8 6 2.7710 -0.0145 4.7634 9 6 3.2337 -0.6794 5.8863 10 6 3.5510 -2.0270 5.7739 11 9 4.0062 -2.7128 6.8453 12 6 3.3965 -2.6618 4.5485 13 7 2.9501 -2.0052 3.5006 14 6 2.0400 -0.7212 -1.2492 15 1 1.6766 -1.7488 -1.2492 16 6 3.5700 -0.7206 -1.2495 17 7 1.5503 -0.0288 -2.4487 18 6 1.4875 -0.9438 -3.5961 19 6 0.9826 -0.1994 -4.8052 20 8 0.7022 0.9774 -4.7194 21 7 0.8417 -0.8418 -5.9817 22 6 0.3819 -0.1647 -7.0815 23 1 0.1322 0.8832 -7.0051 24 6 0.2371 -0.8268 -8.2946 25 7 0.5414 -2.1018 -8.3876 26 14 -0.3901 0.0955 -9.7930 27 1 0.5308 1.2180 -10.1046 28 1 -0.4528 -0.8294 -10.9531 29 1 -1.7464 0.6313 -9.5125 30 1 -0.3633 0.5138 -0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 2.2491 -1.6317 1.1527 34 1 2.5144 1.0333 4.8145 35 1 3.3445 -0.1625 6.8280 36 1 3.6424 -3.7094 4.4560 37 1 3.9337 -1.2342 -0.3595 38 1 3.9329 0.3072 -1.2497 39 1 3.9334 -1.2349 -2.1393 40 1 0.6527 0.3992 -2.2779 41 1 2.4830 -1.3375 -3.8017 42 1 0.8112 -1.7675 -3.3673 43 1 1.0656 -1.7831 -6.0502 44 1 0.4407 -2.5639 -9.2346 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282121822.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:25 Heat of formation + Delta-G solvation = -102.890234 kcal Electronic energy + Delta-G solvation = -27919.110196 eV Core-core repulsion = 23591.997112 eV Total energy + Delta-G solvation = -4327.113084 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.12530 -41.77285 -40.47142 -40.02366 -38.45385 -36.05387 -35.41714 -33.74082 -33.26453 -32.64521 -31.41714 -30.75450 -28.03884 -26.00153 -25.91302 -25.03165 -24.08339 -21.91815 -21.53065 -21.08088 -19.92290 -19.44961 -18.66638 -18.45766 -17.74815 -17.31865 -17.01503 -16.97613 -16.41078 -16.30226 -16.17437 -15.83126 -15.43899 -15.37190 -14.98177 -14.92414 -14.77157 -14.45408 -14.28811 -14.14981 -14.04285 -13.65502 -13.52463 -13.46325 -13.13526 -12.89170 -12.68464 -12.61183 -12.42020 -12.34183 -12.11648 -11.63655 -11.49478 -11.48841 -11.12814 -10.81944 -10.33714 -10.32809 -10.05790 -10.00373 -9.35614 -8.45539 -5.94061 -0.67048 -0.04339 1.40640 1.42607 1.51628 1.53362 1.86042 2.06673 2.30594 2.60416 2.77003 2.92981 3.05795 3.21836 3.50729 3.53715 3.60841 3.68106 3.75367 3.94248 4.10794 4.16624 4.31897 4.42014 4.47106 4.55793 4.59362 4.60814 4.70259 4.72658 4.77639 4.85549 4.94635 4.99877 5.18773 5.33094 5.38455 5.39714 5.42272 5.89918 6.10535 6.24997 6.38661 6.57159 6.61512 7.05627 7.13824 7.57553 8.13128 8.71498 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034453 B = 0.001684 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.503697 B =16624.990070 C =17106.631859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.147 3.853 3 H 0.078 0.922 4 N -0.688 5.688 5 C 0.571 3.429 6 O -0.563 6.563 7 C 0.051 3.949 8 C -0.084 4.084 9 C -0.106 4.106 10 C 0.072 3.928 11 F -0.124 7.124 12 C 0.077 3.923 13 N -0.440 5.440 14 C 0.084 3.916 15 H 0.070 0.930 16 C -0.137 4.137 17 N -0.677 5.677 18 C 0.066 3.934 19 C 0.437 3.563 20 O -0.624 6.624 21 N -0.572 5.572 22 C -0.335 4.335 23 H 0.078 0.922 24 C -0.012 4.012 25 N -0.919 5.919 26 Si 0.992 3.008 27 H -0.273 1.273 28 H -0.270 1.270 29 H -0.272 1.272 30 H 0.066 0.934 31 H 0.072 0.928 32 H 0.057 0.943 33 H 0.419 0.581 34 H 0.162 0.838 35 H 0.183 0.817 36 H 0.202 0.798 37 H 0.074 0.926 38 H 0.046 0.954 39 H 0.058 0.942 40 H 0.347 0.653 41 H 0.105 0.895 42 H 0.071 0.929 43 H 0.397 0.603 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.696 -6.393 29.902 31.302 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.042 3.958 3 H 0.096 0.904 4 N -0.339 5.339 5 C 0.357 3.643 6 O -0.442 6.442 7 C -0.087 4.087 8 C -0.105 4.105 9 C -0.132 4.132 10 C 0.050 3.950 11 F -0.102 7.102 12 C -0.084 4.084 13 N -0.151 5.151 14 C -0.026 4.026 15 H 0.088 0.912 16 C -0.195 4.195 17 N -0.313 5.313 18 C -0.066 4.066 19 C 0.225 3.775 20 O -0.510 6.510 21 N -0.209 5.209 22 C -0.465 4.465 23 H 0.096 0.904 24 C -0.212 4.212 25 N -0.560 5.560 26 Si 0.816 3.184 27 H -0.199 1.199 28 H -0.194 1.194 29 H -0.197 1.197 30 H 0.085 0.915 31 H 0.091 0.909 32 H 0.077 0.923 33 H 0.257 0.743 34 H 0.180 0.820 35 H 0.200 0.800 36 H 0.218 0.782 37 H 0.093 0.907 38 H 0.065 0.935 39 H 0.077 0.923 40 H 0.169 0.831 41 H 0.123 0.877 42 H 0.089 0.911 43 H 0.231 0.769 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.799 -5.098 28.840 30.066 hybrid contribution -0.696 -0.556 0.158 0.905 sum 6.104 -5.654 28.998 30.168 Atomic orbital electron populations 1.22203 0.94683 1.03035 1.02450 1.20931 0.94238 0.97204 0.83448 0.90410 1.45690 1.65111 1.14939 1.08208 1.18021 0.77408 0.85696 0.83182 1.90807 1.51818 1.16432 1.85106 1.21063 1.02204 0.91041 0.94369 1.22158 0.94993 1.02664 0.90664 1.21974 0.97300 0.92598 1.01332 1.19167 0.98883 0.91522 0.85423 1.91574 1.85910 1.79207 1.53513 1.23378 0.96656 1.02323 0.86092 1.67571 1.08698 1.07500 1.31308 1.21747 0.96825 0.96556 0.87488 0.91191 1.21801 0.93554 1.01995 1.02173 1.60167 1.35305 1.32515 1.03345 1.21583 1.02512 0.93655 0.88831 1.20883 0.83220 0.87979 0.85462 1.90497 1.56642 1.18268 1.85611 1.41912 1.58271 1.12581 1.08180 1.19631 1.42213 0.95978 0.88642 0.90372 1.26021 0.97240 0.96632 1.01311 1.69667 1.48524 1.09631 1.28165 0.85000 0.78695 0.77821 0.76889 1.19859 1.19450 1.19714 0.91532 0.90907 0.92343 0.74262 0.82022 0.79965 0.78169 0.90670 0.93463 0.92267 0.83131 0.87678 0.91072 0.76908 0.91301 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.62 9.25 71.98 0.67 -2.95 16 2 C 0.15 3.28 2.29 44.99 0.10 3.39 16 3 H 0.08 2.16 7.58 -2.39 -0.02 2.14 16 4 N -0.69 -12.96 4.37 -445.23 -1.95 -14.90 16 5 C 0.57 12.40 7.77 86.85 0.68 13.08 16 6 O -0.56 -15.94 15.98 -3.81 -0.06 -16.01 16 7 C 0.05 0.85 6.75 41.89 0.28 1.13 16 8 C -0.08 -1.08 9.63 22.60 0.22 -0.86 16 9 C -0.11 -0.90 10.15 22.48 0.23 -0.67 16 10 C 0.07 0.68 7.36 22.58 0.17 0.84 16 11 F -0.12 -1.24 17.28 44.97 0.78 -0.46 16 12 C 0.08 0.75 11.17 84.90 0.95 1.70 16 13 N -0.44 -6.20 9.53 -184.73 -1.76 -7.96 16 14 C 0.08 1.88 2.28 44.91 0.10 1.98 16 15 H 0.07 1.32 7.80 -2.39 -0.02 1.30 16 16 C -0.14 -2.94 9.26 71.98 0.67 -2.27 16 17 N -0.68 -20.97 5.93 -495.59 -2.94 -23.91 16 18 C 0.07 2.21 5.96 85.56 0.51 2.72 16 19 C 0.44 20.69 7.82 87.66 0.69 21.38 16 20 O -0.62 -34.72 15.78 -3.05 -0.05 -34.77 16 21 N -0.57 -29.22 5.29 -306.99 -1.62 -30.84 16 22 C -0.34 -19.06 9.68 84.04 0.81 -18.25 16 23 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 24 C -0.01 -0.65 5.50 84.93 0.47 -0.18 16 25 N -0.92 -49.35 13.05 21.66 0.28 -49.07 16 26 Si 0.99 43.01 29.55 68.60 2.03 45.04 16 27 H -0.27 -11.78 7.11 99.48 0.71 -11.07 16 28 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 29 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 30 H 0.07 1.59 6.21 -2.39 -0.01 1.58 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.06 1.36 8.14 -2.38 -0.02 1.34 16 33 H 0.42 6.29 7.71 -92.71 -0.72 5.57 16 34 H 0.16 1.98 7.64 -2.91 -0.02 1.96 16 35 H 0.18 0.50 8.06 -2.92 -0.02 0.47 16 36 H 0.20 0.78 8.06 -2.91 -0.02 0.75 16 37 H 0.07 1.27 7.45 -2.39 -0.02 1.25 16 38 H 0.05 1.17 8.14 -2.39 -0.02 1.16 16 39 H 0.06 1.28 7.45 -2.38 -0.02 1.26 16 40 H 0.35 11.34 5.87 -89.70 -0.53 10.82 16 41 H 0.11 3.15 7.44 -2.38 -0.02 3.14 16 42 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 43 H 0.40 19.12 7.90 -92.70 -0.73 18.38 16 44 H 0.28 13.99 8.31 -92.70 -0.77 13.22 16 Total: -1.00 -72.10 380.06 0.34 -71.75 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.90 Total: 40.11 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 6.53 Total: 21.02 kcal Atomic # 7 Polarization: -118.70 SS G_CDS: -7.99 Total: -126.69 kcal Atomic # 8 Polarization: -50.66 SS G_CDS: -0.11 Total: -50.77 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.78 Total: -0.46 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.04 kcal Total: -72.10 0.34 -71.75 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282121822.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.138 kcal (2) G-P(sol) polarization free energy of solvation -72.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.753 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds