Wall clock time and date at job start Tue Mar 31 2020 20:40:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.46894 * 111.00220 * 274.99988 * 4 2 1 6 6 C 1.50694 * 109.47381 * 179.97438 * 5 4 2 7 7 O 1.21293 * 120.00187 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00497 * 180.02562 * 6 5 4 9 9 C 1.37096 * 120.00594 * 180.02562 * 8 6 5 10 10 H 1.08008 * 119.99964 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00381 * 179.97438 * 9 8 6 12 12 N 1.31406 * 119.99519 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00086 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47318 * 59.99945 * 13 11 9 15 15 H 1.48499 * 109.47235 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47089 * 299.99911 * 13 11 9 17 17 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 18 18 H 1.09002 * 109.47075 * 299.99262 * 17 2 1 19 19 C 1.53006 * 109.46711 * 180.02562 * 17 2 1 20 20 N 1.46492 * 109.47204 * 59.99987 * 17 2 1 21 21 C 1.34780 * 119.99930 * 204.99895 * 20 17 2 22 22 O 1.21531 * 119.99999 * 359.97438 * 21 20 17 23 23 C 1.48052 * 119.99974 * 180.02562 * 21 20 17 24 24 C 1.39386 * 119.69086 * 179.73227 * 23 21 20 25 25 C 1.38463 * 119.09053 * 179.75172 * 24 23 21 26 26 C 1.38901 * 118.46947 * 0.50165 * 25 24 23 27 27 F 1.35101 * 120.34863 * 179.75002 * 26 25 24 28 28 C 1.38878 * 119.29957 * 359.73698 * 26 25 24 29 29 N 1.31454 * 120.85465 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.00904 * 110.99838 * 151.04516 * 4 2 1 34 34 H 1.08998 * 109.47346 * 299.99916 * 5 4 2 35 35 H 1.09007 * 109.47035 * 60.00148 * 5 4 2 36 36 H 0.97005 * 119.99767 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99603 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46589 * 299.99365 * 19 17 2 39 39 H 1.08996 * 109.47165 * 59.99875 * 19 17 2 40 40 H 1.09001 * 109.46726 * 179.97438 * 19 17 2 41 41 H 0.96998 * 120.00353 * 24.99609 * 20 17 2 42 42 H 1.07996 * 120.44993 * 359.97438 * 24 23 21 43 43 H 1.07995 * 120.76320 * 180.20958 * 25 24 23 44 44 H 1.07998 * 119.57231 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5218 3.5559 7 8 2.8669 -1.6990 3.4704 8 7 2.7274 0.1201 4.7327 9 6 3.1872 -0.5570 5.8326 10 1 3.4369 -1.6050 5.7562 11 6 3.3320 0.1050 7.0456 12 7 3.0286 1.3802 7.1384 13 14 3.9578 -0.8177 8.5444 14 1 5.3138 -1.3546 8.2646 15 1 4.0219 0.1074 9.7042 16 1 3.0358 -1.9394 8.8557 17 6 2.0399 -0.7212 -1.2493 18 1 1.6766 -1.7489 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0306 -2.4454 21 6 1.4228 -0.7030 -3.6064 22 8 1.7123 -1.8820 -3.6611 23 6 0.9298 -0.0049 -4.8153 24 6 0.8044 -0.7050 -6.0140 25 6 0.3372 -0.0412 -7.1357 26 6 0.0203 1.3065 -7.0235 27 9 -0.4340 1.9925 -8.0951 28 6 0.1750 1.9413 -5.7980 29 7 0.6164 1.2834 -4.7490 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 2.9173 -1.1205 1.0286 34 1 2.7589 1.0461 2.1182 35 1 1.0870 0.6162 2.5525 36 1 2.5034 1.0615 4.8013 37 1 3.1301 1.8425 7.9852 38 1 3.9336 0.3058 -1.2488 39 1 3.9329 -1.2359 -0.3590 40 1 3.9332 -1.2360 -2.1388 41 1 1.3208 0.9105 -2.4018 42 1 1.0647 -1.7519 -6.0662 43 1 0.2264 -0.5582 -8.0774 44 1 -0.0705 2.9889 -5.7056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282121823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:28 Heat of formation + Delta-G solvation = -78.014735 kcal Electronic energy + Delta-G solvation = -27917.959073 eV Core-core repulsion = 23591.924671 eV Total energy + Delta-G solvation = -4326.034401 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.65261 -41.11376 -39.59371 -38.41531 -37.25748 -34.58087 -33.83035 -33.18022 -31.96716 -31.23685 -30.43099 -29.81765 -26.42412 -25.32451 -24.53460 -24.22819 -23.15343 -21.09777 -20.56405 -19.31244 -18.71582 -18.13831 -17.96853 -17.77989 -16.51159 -16.37041 -16.31906 -15.62594 -15.38667 -15.37212 -14.79678 -14.51009 -14.42771 -14.24591 -14.06308 -13.84339 -13.81128 -13.53382 -13.45705 -13.20661 -12.95248 -12.46238 -12.36502 -11.90560 -11.69019 -11.59388 -11.44522 -11.32789 -11.01872 -10.73114 -10.65688 -10.63012 -10.43537 -10.21126 -10.17714 -9.67079 -9.49348 -9.30502 -8.45168 -8.09959 -7.95510 -6.41063 -3.81805 -0.11024 0.41051 2.21414 2.66649 3.20982 3.21927 3.26559 3.27932 3.31203 3.56730 3.91330 4.03201 4.07562 4.12067 4.23941 4.35802 4.56484 4.68476 4.83436 5.02283 5.11147 5.15010 5.18531 5.21947 5.25778 5.36918 5.49034 5.63110 5.70500 5.79063 5.83413 5.87402 5.96433 5.97545 6.12152 6.20380 6.26363 6.36321 6.88562 7.18309 7.26694 7.55808 7.63842 7.85273 8.06764 8.61907 9.18515 9.54822 10.06361 10.76592 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034455 B = 0.001684 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.462813 B =16625.237839 C =17107.072385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.078 3.922 3 H 0.048 0.952 4 N -0.660 5.660 5 C 0.051 3.949 6 C 0.440 3.560 7 O -0.582 6.582 8 N -0.563 5.563 9 C -0.300 4.300 10 H 0.103 0.897 11 C 0.022 3.978 12 N -0.902 5.902 13 Si 0.931 3.069 14 H -0.274 1.274 15 H -0.285 1.285 16 H -0.273 1.273 17 C 0.139 3.861 18 H 0.102 0.898 19 C -0.171 4.171 20 N -0.698 5.698 21 C 0.573 3.427 22 O -0.527 6.527 23 C 0.070 3.930 24 C -0.081 4.081 25 C -0.115 4.115 26 C 0.070 3.930 27 F -0.124 7.124 28 C 0.077 3.923 29 N -0.430 5.430 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.053 0.947 33 H 0.351 0.649 34 H 0.044 0.956 35 H 0.087 0.913 36 H 0.392 0.608 37 H 0.272 0.728 38 H 0.057 0.943 39 H 0.076 0.924 40 H 0.065 0.935 41 H 0.410 0.590 42 H 0.161 0.839 43 H 0.156 0.844 44 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.140 4.629 -28.675 29.688 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.033 4.033 3 H 0.066 0.934 4 N -0.296 5.296 5 C -0.081 4.081 6 C 0.226 3.774 7 O -0.467 6.467 8 N -0.200 5.200 9 C -0.429 4.429 10 H 0.120 0.880 11 C -0.179 4.179 12 N -0.543 5.543 13 Si 0.758 3.242 14 H -0.199 1.199 15 H -0.210 1.210 16 H -0.199 1.199 17 C 0.034 3.966 18 H 0.120 0.880 19 C -0.229 4.229 20 N -0.349 5.349 21 C 0.357 3.643 22 O -0.403 6.403 23 C -0.068 4.068 24 C -0.102 4.102 25 C -0.142 4.142 26 C 0.048 3.952 27 F -0.102 7.102 28 C -0.085 4.085 29 N -0.141 5.141 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.072 0.928 33 H 0.174 0.826 34 H 0.062 0.938 35 H 0.105 0.895 36 H 0.225 0.775 37 H 0.082 0.918 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.246 0.754 42 H 0.178 0.822 43 H 0.174 0.826 44 H 0.193 0.807 Dipole moment (debyes) X Y Z Total from point charges -6.231 3.282 -27.599 28.483 hybrid contribution 0.576 1.077 -0.415 1.290 sum -5.655 4.360 -28.014 28.909 Atomic orbital electron populations 1.21814 0.94087 1.02792 1.01147 1.21728 0.96609 0.95911 0.89035 0.93416 1.60180 1.35336 1.31871 1.02246 1.21723 1.01390 0.93841 0.91171 1.19788 0.84987 0.88211 0.84432 1.90529 1.55286 1.16087 1.84752 1.41850 1.57774 1.12425 1.07941 1.19662 1.40017 0.96443 0.86821 0.87952 1.25259 0.97654 0.95783 0.99231 1.69603 1.48629 1.08841 1.27265 0.85912 0.79418 0.78837 0.80018 1.19930 1.20999 1.19877 1.21177 0.94144 0.98314 0.82940 0.87971 1.22268 0.94934 1.02400 1.03303 1.45831 1.65524 1.14668 1.08918 1.17671 0.78116 0.86029 0.82481 1.90832 1.50114 1.14853 1.84458 1.21316 1.00393 0.90363 0.94774 1.22091 0.94889 1.02465 0.90723 1.21726 0.98729 0.92766 1.00929 1.19090 0.99352 0.91324 0.85465 1.91565 1.86007 1.79167 1.53498 1.22962 0.97689 1.01325 0.86509 1.67606 1.08117 1.07913 1.30454 0.91734 0.92225 0.92817 0.82583 0.93784 0.89500 0.77468 0.91838 0.92351 0.90573 0.91627 0.75390 0.82169 0.82600 0.80676 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.61 9.26 37.16 0.34 -1.26 16 2 C 0.08 0.93 2.28 -67.71 -0.15 0.77 16 3 H 0.05 0.52 7.80 -51.93 -0.40 0.12 16 4 N -0.66 -10.42 5.93 -108.00 -0.64 -11.06 16 5 C 0.05 0.89 5.96 -4.98 -0.03 0.86 16 6 C 0.44 10.34 7.82 -10.99 -0.09 10.26 16 7 O -0.58 -15.79 15.78 5.55 0.09 -15.70 16 8 N -0.56 -14.22 5.29 -10.96 -0.06 -14.28 16 9 C -0.30 -8.37 9.68 -14.93 -0.14 -8.51 16 10 H 0.10 2.99 7.16 -52.48 -0.38 2.62 16 11 C 0.02 0.60 5.50 -17.47 -0.10 0.50 16 12 N -0.90 -24.47 13.05 55.50 0.72 -23.75 16 13 Si 0.93 21.08 29.55 -169.99 -5.02 16.06 16 14 H -0.27 -6.16 7.11 56.52 0.40 -5.76 16 15 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 16 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 17 C 0.14 1.57 2.29 -67.93 -0.16 1.42 16 18 H 0.10 1.37 7.58 -51.93 -0.39 0.97 16 19 C -0.17 -1.89 9.25 37.16 0.34 -1.55 16 20 N -0.70 -6.86 4.37 -54.68 -0.24 -7.10 16 21 C 0.57 6.25 7.77 -12.23 -0.10 6.16 16 22 O -0.53 -7.25 15.98 5.34 0.09 -7.16 16 23 C 0.07 0.62 6.75 -83.02 -0.56 0.06 16 24 C -0.08 -0.56 9.63 -39.07 -0.38 -0.94 16 25 C -0.12 -0.61 10.15 -39.25 -0.40 -1.01 16 26 C 0.07 0.41 7.36 -39.10 -0.29 0.12 16 27 F -0.12 -0.78 17.28 2.25 0.04 -0.74 16 28 C 0.08 0.46 11.17 -17.48 -0.20 0.27 16 29 N -0.43 -3.40 9.53 -9.74 -0.09 -3.49 16 30 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 31 H 0.06 0.70 7.45 -51.93 -0.39 0.32 16 32 H 0.05 0.51 7.45 -51.93 -0.39 0.12 16 33 H 0.35 5.72 5.87 -39.29 -0.23 5.49 16 34 H 0.04 0.68 8.06 -51.93 -0.42 0.26 16 35 H 0.09 1.39 7.44 -51.93 -0.39 1.01 16 36 H 0.39 9.44 7.90 -40.82 -0.32 9.11 16 37 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 38 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 39 H 0.08 0.90 6.21 -51.93 -0.32 0.57 16 40 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 41 H 0.41 3.44 7.71 -40.82 -0.31 3.12 16 42 H 0.16 1.01 7.64 -52.49 -0.40 0.61 16 43 H 0.16 0.44 8.06 -52.49 -0.42 0.01 16 44 H 0.18 0.60 8.06 -52.49 -0.42 0.18 16 LS Contribution 380.06 15.07 5.73 5.73 Total: -1.00 -32.82 380.06 -6.87 -39.70 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: -5.59 Total: 14.66 kcal Atomic # 6 Polarization: 9.03 SS G_CDS: -1.89 Total: 7.14 kcal Atomic # 7 Polarization: -59.38 SS G_CDS: -0.31 Total: -59.68 kcal Atomic # 8 Polarization: -23.04 SS G_CDS: 0.17 Total: -22.87 kcal Atomic # 9 Polarization: -0.78 SS G_CDS: 0.04 Total: -0.74 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Total LS contribution 5.73 Total: 5.73 kcal Total: -32.82 -6.87 -39.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282121823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.318 kcal (2) G-P(sol) polarization free energy of solvation -32.823 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.874 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.015 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds