Wall clock time and date at job start Tue Mar 31 2020 20:40:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09002 * 109.47153 * 2 1 4 4 N 1.46899 * 109.47254 * 120.00004 * 2 1 3 5 5 C 1.46894 * 111.00220 * 274.99988 * 4 2 1 6 6 C 1.50694 * 109.47381 * 179.97438 * 5 4 2 7 7 O 1.21293 * 120.00187 * 359.97438 * 6 5 4 8 8 N 1.34776 * 120.00497 * 180.02562 * 6 5 4 9 9 C 1.37096 * 120.00594 * 180.02562 * 8 6 5 10 10 H 1.08008 * 119.99964 * 359.97438 * 9 8 6 11 11 C 1.38951 * 120.00381 * 179.97438 * 9 8 6 12 12 N 1.31406 * 119.99519 * 359.97438 * 11 9 8 13 13 Si 1.86797 * 120.00086 * 179.97438 * 11 9 8 14 14 H 1.48502 * 109.47318 * 59.99945 * 13 11 9 15 15 H 1.48499 * 109.47235 * 179.97438 * 13 11 9 16 16 H 1.48499 * 109.47089 * 299.99911 * 13 11 9 17 17 C 1.53002 * 109.46817 * 240.00231 * 2 1 3 18 18 H 1.09002 * 109.47075 * 299.99262 * 17 2 1 19 19 C 1.53006 * 109.46711 * 180.02562 * 17 2 1 20 20 N 1.46492 * 109.47204 * 59.99987 * 17 2 1 21 21 C 1.34780 * 119.99930 * 204.99895 * 20 17 2 22 22 O 1.21531 * 119.99999 * 359.97438 * 21 20 17 23 23 C 1.48052 * 119.99974 * 180.02562 * 21 20 17 24 24 C 1.39386 * 119.69086 * 179.73227 * 23 21 20 25 25 C 1.38463 * 119.09053 * 179.75172 * 24 23 21 26 26 C 1.38901 * 118.46947 * 0.50165 * 25 24 23 27 27 F 1.35101 * 120.34863 * 179.75002 * 26 25 24 28 28 C 1.38878 * 119.29957 * 359.73698 * 26 25 24 29 29 N 1.31454 * 120.85465 * 0.02562 * 28 26 25 30 30 H 1.09002 * 109.47153 * 180.02562 * 1 2 3 31 31 H 1.08998 * 109.47533 * 299.99629 * 1 2 3 32 32 H 1.08996 * 109.47853 * 59.99972 * 1 2 3 33 33 H 1.00904 * 110.99838 * 151.04516 * 4 2 1 34 34 H 1.08998 * 109.47346 * 299.99916 * 5 4 2 35 35 H 1.09007 * 109.47035 * 60.00148 * 5 4 2 36 36 H 0.97005 * 119.99767 * 359.97438 * 8 6 5 37 37 H 0.97002 * 119.99603 * 180.02562 * 12 11 9 38 38 H 1.09002 * 109.46589 * 299.99365 * 19 17 2 39 39 H 1.08996 * 109.47165 * 59.99875 * 19 17 2 40 40 H 1.09001 * 109.46726 * 179.97438 * 19 17 2 41 41 H 0.96998 * 120.00353 * 24.99609 * 20 17 2 42 42 H 1.07996 * 120.44993 * 359.97438 * 24 23 21 43 43 H 1.07995 * 120.76320 * 180.20958 * 25 24 23 44 44 H 1.07998 * 119.57231 * 180.02562 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 7 2.0197 -0.6925 1.1994 5 6 2.0825 0.2225 2.3468 6 6 2.5874 -0.5218 3.5559 7 8 2.8669 -1.6990 3.4704 8 7 2.7274 0.1201 4.7327 9 6 3.1872 -0.5570 5.8326 10 1 3.4369 -1.6050 5.7562 11 6 3.3320 0.1050 7.0456 12 7 3.0286 1.3802 7.1384 13 14 3.9578 -0.8177 8.5444 14 1 5.3138 -1.3546 8.2646 15 1 4.0219 0.1074 9.7042 16 1 3.0358 -1.9394 8.8557 17 6 2.0399 -0.7212 -1.2493 18 1 1.6766 -1.7489 -1.2493 19 6 3.5700 -0.7218 -1.2490 20 7 1.5516 -0.0306 -2.4454 21 6 1.4228 -0.7030 -3.6064 22 8 1.7123 -1.8820 -3.6611 23 6 0.9298 -0.0049 -4.8153 24 6 0.8044 -0.7050 -6.0140 25 6 0.3372 -0.0412 -7.1357 26 6 0.0203 1.3065 -7.0235 27 9 -0.4340 1.9925 -8.0951 28 6 0.1750 1.9413 -5.7980 29 7 0.6164 1.2834 -4.7490 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3634 0.5137 0.8900 32 1 -0.3635 0.5138 -0.8899 33 1 2.9173 -1.1205 1.0286 34 1 2.7589 1.0461 2.1182 35 1 1.0870 0.6162 2.5525 36 1 2.5034 1.0615 4.8013 37 1 3.1301 1.8425 7.9852 38 1 3.9336 0.3058 -1.2488 39 1 3.9329 -1.2359 -0.3590 40 1 3.9332 -1.2360 -2.1388 41 1 1.3208 0.9105 -2.4018 42 1 1.0647 -1.7519 -6.0662 43 1 0.2264 -0.5582 -8.0774 44 1 -0.0705 2.9889 -5.7056 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282121823.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:40:27 Heat of formation + Delta-G solvation = -102.899522 kcal Electronic energy + Delta-G solvation = -27919.038158 eV Core-core repulsion = 23591.924671 eV Total energy + Delta-G solvation = -4327.113487 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.12595 -41.77251 -40.47104 -40.02315 -38.45345 -36.05407 -35.41678 -33.74079 -33.26588 -32.64549 -31.41716 -30.75505 -28.03926 -26.00177 -25.91322 -25.03156 -24.08329 -21.91830 -21.53033 -21.08103 -19.92273 -19.44974 -18.66662 -18.45782 -17.74827 -17.31724 -17.01540 -16.97643 -16.41111 -16.30371 -16.17359 -15.83143 -15.43896 -15.37180 -14.98176 -14.92431 -14.77194 -14.45397 -14.28804 -14.14961 -14.04261 -13.65528 -13.52448 -13.46370 -13.13534 -12.89182 -12.68516 -12.61164 -12.41989 -12.34165 -12.11650 -11.63628 -11.49472 -11.48838 -11.12820 -10.81928 -10.33686 -10.32789 -10.05763 -10.00424 -9.35597 -8.45549 -5.94073 -0.67072 -0.04309 1.40646 1.42611 1.51629 1.53341 1.86061 2.06668 2.30574 2.60417 2.77019 2.92979 3.05765 3.21855 3.50708 3.53716 3.60832 3.68102 3.75384 3.94220 4.10812 4.16645 4.31886 4.42062 4.47096 4.55749 4.59386 4.60820 4.70267 4.72668 4.77648 4.85588 4.94659 4.99825 5.18790 5.33123 5.38476 5.39727 5.42248 5.89922 6.10541 6.25011 6.38642 6.57184 6.61493 7.05634 7.13831 7.57553 8.13135 8.71511 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034455 B = 0.001684 C = 0.001636 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 812.462813 B =16625.237839 C =17107.072385 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.084 3.916 3 H 0.070 0.930 4 N -0.677 5.677 5 C 0.067 3.933 6 C 0.437 3.563 7 O -0.624 6.624 8 N -0.572 5.572 9 C -0.335 4.335 10 H 0.078 0.922 11 C -0.012 4.012 12 N -0.919 5.919 13 Si 0.992 3.008 14 H -0.272 1.272 15 H -0.270 1.270 16 H -0.273 1.273 17 C 0.147 3.853 18 H 0.078 0.922 19 C -0.165 4.165 20 N -0.688 5.688 21 C 0.571 3.429 22 O -0.563 6.563 23 C 0.050 3.950 24 C -0.084 4.084 25 C -0.106 4.106 26 C 0.072 3.928 27 F -0.124 7.124 28 C 0.077 3.923 29 N -0.440 5.440 30 H 0.046 0.954 31 H 0.058 0.942 32 H 0.075 0.925 33 H 0.347 0.653 34 H 0.071 0.929 35 H 0.105 0.895 36 H 0.397 0.603 37 H 0.278 0.722 38 H 0.072 0.928 39 H 0.066 0.934 40 H 0.058 0.942 41 H 0.419 0.581 42 H 0.162 0.838 43 H 0.183 0.817 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.681 6.401 -29.906 31.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.026 4.026 3 H 0.088 0.912 4 N -0.313 5.313 5 C -0.066 4.066 6 C 0.224 3.776 7 O -0.510 6.510 8 N -0.209 5.209 9 C -0.465 4.465 10 H 0.096 0.904 11 C -0.212 4.212 12 N -0.560 5.560 13 Si 0.816 3.184 14 H -0.197 1.197 15 H -0.195 1.195 16 H -0.198 1.198 17 C 0.042 3.958 18 H 0.096 0.904 19 C -0.224 4.224 20 N -0.339 5.339 21 C 0.357 3.643 22 O -0.442 6.442 23 C -0.087 4.087 24 C -0.105 4.105 25 C -0.132 4.132 26 C 0.050 3.950 27 F -0.102 7.102 28 C -0.084 4.084 29 N -0.151 5.151 30 H 0.065 0.935 31 H 0.077 0.923 32 H 0.093 0.907 33 H 0.169 0.831 34 H 0.089 0.911 35 H 0.123 0.877 36 H 0.231 0.769 37 H 0.087 0.913 38 H 0.091 0.909 39 H 0.085 0.915 40 H 0.077 0.923 41 H 0.257 0.743 42 H 0.180 0.820 43 H 0.200 0.800 44 H 0.218 0.782 Dipole moment (debyes) X Y Z Total from point charges -6.791 5.104 -28.843 30.068 hybrid contribution 0.698 0.556 -0.158 0.906 sum -6.093 5.660 -29.000 30.169 Atomic orbital electron populations 1.21799 0.93558 1.01997 1.02172 1.21747 0.96824 0.96554 0.87490 0.91193 1.60165 1.35306 1.32517 1.03344 1.21582 1.02509 0.93656 0.88831 1.20882 0.83222 0.87987 0.85459 1.90499 1.56663 1.18242 1.85622 1.41910 1.58275 1.12593 1.08156 1.19632 1.42228 0.95976 0.88637 0.90374 1.26018 0.97234 0.96631 1.01310 1.69660 1.48521 1.09615 1.28185 0.85001 0.78693 0.77824 0.76892 1.19725 1.19451 1.19848 1.20932 0.94242 0.97200 0.83449 0.90415 1.22204 0.94682 1.03031 1.02453 1.45688 1.65106 1.14935 1.08216 1.18022 0.77408 0.85695 0.83182 1.90808 1.51796 1.16452 1.85108 1.21062 1.02193 0.91074 0.94350 1.22158 0.94985 1.02650 0.90679 1.21974 0.97274 0.92614 1.01349 1.19167 0.98890 0.91515 0.85421 1.91573 1.85945 1.79190 1.53494 1.23377 0.96697 1.02308 0.86060 1.67568 1.08699 1.07476 1.31337 0.93469 0.92273 0.90661 0.83127 0.91073 0.87680 0.76908 0.91297 0.90904 0.91535 0.92339 0.74261 0.82022 0.79966 0.78169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.94 9.26 71.98 0.67 -2.27 16 2 C 0.08 1.88 2.28 44.92 0.10 1.98 16 3 H 0.07 1.32 7.80 -2.39 -0.02 1.30 16 4 N -0.68 -20.98 5.93 -495.59 -2.94 -23.92 16 5 C 0.07 2.21 5.96 85.56 0.51 2.72 16 6 C 0.44 20.69 7.82 87.66 0.69 21.37 16 7 O -0.62 -34.73 15.78 -3.07 -0.05 -34.78 16 8 N -0.57 -29.21 5.29 -306.98 -1.62 -30.84 16 9 C -0.34 -19.07 9.68 84.04 0.81 -18.26 16 10 H 0.08 4.74 7.16 -2.91 -0.02 4.72 16 11 C -0.01 -0.64 5.50 84.93 0.47 -0.18 16 12 N -0.92 -49.35 13.05 21.66 0.28 -49.06 16 13 Si 0.99 43.01 29.55 68.60 2.03 45.03 16 14 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 15 H -0.27 -10.99 7.11 99.48 0.71 -10.28 16 16 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 17 C 0.15 3.28 2.29 45.00 0.10 3.39 16 18 H 0.08 2.16 7.58 -2.39 -0.02 2.14 16 19 C -0.17 -3.62 9.25 71.98 0.67 -2.95 16 20 N -0.69 -12.96 4.37 -445.20 -1.95 -14.91 16 21 C 0.57 12.40 7.77 86.85 0.68 13.08 16 22 O -0.56 -15.94 15.98 -3.81 -0.06 -16.01 16 23 C 0.05 0.84 6.75 41.89 0.28 1.13 16 24 C -0.08 -1.08 9.63 22.60 0.22 -0.86 16 25 C -0.11 -0.90 10.15 22.48 0.23 -0.67 16 26 C 0.07 0.68 7.36 22.58 0.17 0.84 16 27 F -0.12 -1.24 17.28 44.97 0.78 -0.46 16 28 C 0.08 0.75 11.17 84.90 0.95 1.70 16 29 N -0.44 -6.20 9.53 -184.74 -1.76 -7.96 16 30 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 31 H 0.06 1.28 7.45 -2.39 -0.02 1.26 16 32 H 0.07 1.27 7.45 -2.39 -0.02 1.26 16 33 H 0.35 11.34 5.87 -89.69 -0.53 10.82 16 34 H 0.07 2.02 8.06 -2.39 -0.02 2.00 16 35 H 0.11 3.15 7.44 -2.38 -0.02 3.14 16 36 H 0.40 19.12 7.90 -92.70 -0.73 18.38 16 37 H 0.28 13.99 8.31 -92.71 -0.77 13.22 16 38 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 39 H 0.07 1.59 6.21 -2.39 -0.01 1.57 16 40 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 41 H 0.42 6.29 7.71 -92.71 -0.71 5.57 16 42 H 0.16 1.98 7.64 -2.91 -0.02 1.96 16 43 H 0.18 0.50 8.06 -2.91 -0.02 0.47 16 44 H 0.20 0.78 8.06 -2.91 -0.02 0.75 16 Total: -1.00 -72.10 380.06 0.34 -71.76 By element: Atomic # 1 Polarization: 41.00 SS G_CDS: -0.90 Total: 40.11 kcal Atomic # 6 Polarization: 14.49 SS G_CDS: 6.53 Total: 21.02 kcal Atomic # 7 Polarization: -118.69 SS G_CDS: -7.99 Total: -126.68 kcal Atomic # 8 Polarization: -50.67 SS G_CDS: -0.11 Total: -50.78 kcal Atomic # 9 Polarization: -1.24 SS G_CDS: 0.78 Total: -0.46 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 2.03 Total: 45.03 kcal Total: -72.10 0.34 -71.76 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282121823.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.142 kcal (2) G-P(sol) polarization free energy of solvation -72.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds