Wall clock time and date at job start Tue Mar 31 2020 20:52:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47352 * 2 1 4 4 C 1.52998 * 109.47022 * 120.00014 * 2 1 3 5 5 N 1.46503 * 109.47318 * 174.99859 * 4 2 1 6 6 C 1.34767 * 119.99941 * 180.02562 * 5 4 2 7 7 O 1.21611 * 120.00395 * 359.97438 * 6 5 4 8 8 C 1.47365 * 119.99748 * 179.97438 * 6 5 4 9 9 C 1.39953 * 120.22075 * 269.99989 * 8 6 5 10 10 F 1.35104 * 120.07415 * 359.97438 * 9 8 6 11 11 C 1.38138 * 119.85127 * 179.97438 * 9 8 6 12 12 C 1.38443 * 120.29787 * 0.02562 * 11 9 8 13 13 C 1.38091 * 120.45361 * 359.97438 * 12 11 9 14 14 C 1.38780 * 120.13950 * 359.74274 * 13 12 11 15 15 N 1.39283 * 120.15140 * 180.27557 * 14 13 12 16 16 C 1.34774 * 120.00202 * 18.59606 * 15 14 13 17 17 N 1.34779 * 120.00313 * 185.79824 * 16 15 14 18 18 O 1.21578 * 119.99815 * 5.80393 * 16 15 14 19 19 N 1.46497 * 109.46863 * 239.99983 * 2 1 3 20 20 C 1.46508 * 120.00156 * 300.00194 * 19 2 1 21 21 C 1.36935 * 120.00229 * 120.00623 * 19 2 1 22 22 H 1.08004 * 119.99788 * 341.18843 * 21 19 2 23 23 C 1.38810 * 120.00402 * 161.18950 * 21 19 2 24 24 N 1.31622 * 119.99921 * 324.09477 * 23 21 19 25 25 Si 1.86802 * 119.99899 * 144.36563 * 23 21 19 26 26 H 1.48504 * 109.47196 * 179.72513 * 25 23 21 27 27 H 1.48502 * 109.47184 * 299.72320 * 25 23 21 28 28 H 1.48497 * 109.47327 * 59.72580 * 25 23 21 29 29 H 1.09000 * 109.46861 * 59.99840 * 1 2 3 30 30 H 1.08997 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47208 * 300.00399 * 1 2 3 32 32 H 1.09002 * 109.47037 * 295.00165 * 4 2 1 33 33 H 1.09004 * 109.47206 * 54.99919 * 4 2 1 34 34 H 0.96995 * 119.99593 * 359.97438 * 5 4 2 35 35 H 1.07993 * 119.84928 * 179.97438 * 11 9 8 36 36 H 1.07999 * 119.76886 * 180.02562 * 12 11 9 37 37 H 1.07995 * 119.92812 * 179.97438 * 13 12 11 38 38 H 0.96998 * 120.00000 * 198.59555 * 15 14 13 39 39 H 0.96997 * 119.99583 * 0.02562 * 17 16 15 40 40 H 0.97004 * 119.99825 * 180.02562 * 17 16 15 41 41 H 1.09005 * 109.46754 * 273.14604 * 20 19 2 42 42 H 1.08994 * 109.47050 * 33.14299 * 20 19 2 43 43 H 1.09001 * 109.47070 * 153.14689 * 20 19 2 44 44 H 0.96994 * 119.99667 * 356.83156 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1729 -1.4292 2.1907 7 8 3.5682 -1.8854 3.1420 8 6 5.6415 -1.5355 2.1314 9 6 6.2437 -2.6471 1.5309 10 9 5.4796 -3.6283 1.0031 11 6 7.6210 -2.7386 1.4791 12 6 8.4085 -1.7361 2.0189 13 6 7.8275 -0.6339 2.6144 14 6 6.4455 -0.5201 2.6714 15 7 5.8593 0.5942 3.2668 16 6 6.5800 1.7184 3.4489 17 7 6.0513 2.7552 4.1286 18 8 7.7070 1.7973 2.9999 19 7 2.0183 -0.6906 -1.1962 20 6 1.6643 -2.0932 -1.4280 21 6 2.8056 -0.0252 -2.0975 22 1 2.8230 1.0546 -2.1055 23 6 3.5814 -0.7385 -3.0010 24 7 4.1393 -1.8737 -2.6369 25 14 3.8396 -0.0836 -4.7313 26 1 4.7052 -1.0209 -5.4913 27 1 2.5269 0.0419 -5.4141 28 1 4.4921 1.2486 -4.6641 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9823 -0.4629 0.4316 35 1 8.0856 -3.5965 1.0161 36 1 9.4845 -1.8162 1.9733 37 1 8.4498 0.1430 3.0332 38 1 4.9322 0.5612 3.5504 39 1 5.1522 2.6921 4.4871 40 1 6.5699 3.5645 4.2593 41 1 2.3848 -2.7378 -0.9245 42 1 0.6666 -2.2861 -1.0338 43 1 1.6783 -2.2993 -2.4983 44 1 4.0466 -2.1887 -1.7242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001282468074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:23 Heat of formation + Delta-G solvation = -53.707484 kcal Electronic energy + Delta-G solvation = -30712.499496 eV Core-core repulsion = 26387.519136 eV Total energy + Delta-G solvation = -4324.980360 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -48.67948 -41.02909 -39.45290 -38.06931 -36.86222 -34.96325 -33.95162 -33.90141 -32.29382 -30.85800 -29.37398 -29.20767 -26.20686 -26.04454 -23.62268 -23.50886 -22.73262 -21.16771 -20.29763 -19.52213 -18.71618 -18.49096 -17.63734 -17.32175 -16.75555 -16.28281 -15.94943 -15.52058 -15.24072 -15.19214 -15.09771 -14.96272 -14.56745 -14.07882 -13.95499 -13.59250 -13.28478 -13.06900 -12.89559 -12.63367 -12.37328 -12.35142 -12.07017 -11.75506 -11.66378 -11.15597 -10.85924 -10.74846 -10.73488 -10.54753 -10.27765 -10.26982 -10.02615 -9.97822 -9.72361 -9.58701 -8.74495 -8.64984 -8.30027 -8.13673 -7.04081 -6.20032 -3.18468 1.01017 1.24527 2.40687 2.72797 2.81224 3.47264 3.48539 3.53134 3.70310 3.73679 4.01979 4.34973 4.54543 4.80267 4.99277 5.08354 5.12732 5.27379 5.33946 5.37582 5.42431 5.77170 5.78269 5.90433 5.95319 5.97573 6.08711 6.16291 6.21529 6.32467 6.36800 6.47017 6.48180 6.58213 6.59415 6.70870 6.82029 6.92495 6.95077 7.10196 7.48184 7.90827 7.93251 8.19003 8.47534 8.50699 9.03229 9.80631 10.20008 11.12034 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004479 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.627183 B = 6249.647806 C = 6682.092489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.160 3.840 3 H 0.069 0.931 4 C 0.101 3.899 5 N -0.688 5.688 6 C 0.558 3.442 7 O -0.548 6.548 8 C -0.198 4.198 9 C 0.166 3.834 10 F -0.122 7.122 11 C -0.178 4.178 12 C -0.054 4.054 13 C -0.160 4.160 14 C 0.230 3.770 15 N -0.674 5.674 16 C 0.710 3.290 17 N -0.858 5.858 18 O -0.568 6.568 19 N -0.593 5.593 20 C 0.134 3.866 21 C -0.379 4.379 22 H 0.059 0.941 23 C -0.011 4.011 24 N -0.893 5.893 25 Si 1.052 2.948 26 H -0.287 1.287 27 H -0.295 1.295 28 H -0.294 1.294 29 H 0.059 0.941 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.060 0.940 34 H 0.417 0.583 35 H 0.141 0.859 36 H 0.138 0.862 37 H 0.168 0.832 38 H 0.411 0.589 39 H 0.400 0.600 40 H 0.420 0.580 41 H 0.008 0.992 42 H 0.017 0.983 43 H 0.052 0.948 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.333 5.306 13.451 14.839 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.051 3.949 3 H 0.088 0.912 4 C -0.025 4.025 5 N -0.339 5.339 6 C 0.342 3.658 7 O -0.427 6.427 8 C -0.205 4.205 9 C 0.146 3.854 10 F -0.101 7.101 11 C -0.198 4.198 12 C -0.073 4.073 13 C -0.180 4.180 14 C 0.132 3.868 15 N -0.319 5.319 16 C 0.409 3.591 17 N -0.426 5.426 18 O -0.445 6.445 19 N -0.317 5.317 20 C -0.011 4.011 21 C -0.507 4.507 22 H 0.077 0.923 23 C -0.216 4.216 24 N -0.530 5.530 25 Si 0.882 3.118 26 H -0.212 1.212 27 H -0.222 1.222 28 H -0.221 1.221 29 H 0.078 0.922 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.078 0.922 34 H 0.255 0.745 35 H 0.158 0.842 36 H 0.156 0.844 37 H 0.185 0.815 38 H 0.247 0.753 39 H 0.229 0.771 40 H 0.253 0.747 41 H 0.026 0.974 42 H 0.035 0.965 43 H 0.070 0.930 44 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.475 4.634 12.195 13.792 hybrid contribution -1.494 0.546 1.245 2.020 sum 2.981 5.180 13.440 14.709 Atomic orbital electron populations 1.22140 0.97241 1.01435 1.00830 1.20630 0.92785 0.95948 0.85493 0.91230 1.22094 0.79595 1.01335 0.99443 1.46000 1.08286 1.56865 1.22703 1.17897 0.86129 0.78587 0.83194 1.90776 1.69516 1.48292 1.34092 1.19449 0.94149 0.97936 1.08954 1.17259 0.88720 0.85251 0.94204 1.91583 1.75592 1.59447 1.83442 1.21064 0.91144 1.02259 1.05331 1.21002 1.00183 0.91700 0.94401 1.21707 0.92649 1.00317 1.03355 1.17042 0.91749 0.84769 0.93283 1.42416 1.15855 1.11435 1.62209 1.15836 0.84323 0.79925 0.78967 1.42952 1.21013 1.18029 1.60613 1.90889 1.18121 1.81306 1.54150 1.43973 1.57728 1.09137 1.20860 1.20921 0.95089 0.85144 0.99989 1.19831 1.24975 0.91665 1.14228 0.92330 1.25611 0.94170 0.97626 1.04199 1.70822 1.35421 1.24996 1.21791 0.83712 0.75923 0.75223 0.76944 1.21242 1.22225 1.22082 0.92214 0.93018 0.93484 0.92555 0.92154 0.74545 0.84152 0.84377 0.81518 0.75290 0.77128 0.74713 0.97390 0.96452 0.92967 0.91672 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.50 9.17 37.16 0.34 -2.16 16 2 C 0.16 2.99 2.88 -67.93 -0.20 2.79 16 3 H 0.07 1.31 7.84 -51.93 -0.41 0.90 16 4 C 0.10 1.81 4.97 -4.04 -0.02 1.79 16 5 N -0.69 -13.02 5.38 -61.40 -0.33 -13.35 16 6 C 0.56 10.52 5.73 -12.55 -0.07 10.45 16 7 O -0.55 -11.34 17.11 5.27 0.09 -11.25 16 8 C -0.20 -3.46 5.65 -104.76 -0.59 -4.05 16 9 C 0.17 2.94 7.29 -38.98 -0.28 2.66 16 10 F -0.12 -2.44 16.83 2.25 0.04 -2.40 16 11 C -0.18 -2.56 10.00 -39.54 -0.40 -2.96 16 12 C -0.05 -0.69 10.02 -39.56 -0.40 -1.09 16 13 C -0.16 -2.28 8.78 -39.43 -0.35 -2.62 16 14 C 0.23 3.52 6.52 -83.49 -0.54 2.98 16 15 N -0.67 -8.61 5.24 -14.05 -0.07 -8.69 16 16 C 0.71 8.63 8.68 -86.92 -0.75 7.88 16 17 N -0.86 -6.21 8.88 27.63 0.25 -5.97 16 18 O -0.57 -8.70 14.02 5.30 0.07 -8.63 16 19 N -0.59 -13.56 2.21 -173.48 -0.38 -13.94 16 20 C 0.13 3.10 8.20 59.85 0.49 3.59 16 21 C -0.38 -9.79 9.12 -15.06 -0.14 -9.93 16 22 H 0.06 1.54 7.95 -52.48 -0.42 1.12 16 23 C -0.01 -0.30 4.43 -17.43 -0.08 -0.37 16 24 N -0.89 -25.54 12.74 55.49 0.71 -24.83 16 25 Si 1.05 24.60 30.04 -169.99 -5.11 19.49 16 26 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 28 H -0.29 -6.64 7.11 56.52 0.40 -6.24 16 29 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 30 H 0.05 0.83 6.68 -51.93 -0.35 0.48 16 31 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 32 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 33 H 0.06 1.16 7.84 -51.93 -0.41 0.76 16 34 H 0.42 8.76 7.87 -40.82 -0.32 8.44 16 35 H 0.14 1.70 8.06 -52.49 -0.42 1.28 16 36 H 0.14 1.30 8.06 -52.49 -0.42 0.87 16 37 H 0.17 2.37 5.34 -52.49 -0.28 2.09 16 38 H 0.41 4.76 7.76 -40.82 -0.32 4.44 16 39 H 0.40 1.87 8.85 -40.82 -0.36 1.50 16 40 H 0.42 2.38 8.93 -40.82 -0.36 2.02 16 41 H 0.01 0.20 7.07 -51.93 -0.37 -0.17 16 42 H 0.02 0.35 6.44 -51.93 -0.33 0.02 16 43 H 0.05 1.32 7.10 -51.93 -0.37 0.95 16 44 H 0.27 7.87 6.66 -40.82 -0.27 7.60 16 LS Contribution 372.06 15.07 5.61 5.61 Total: -1.00 -32.97 372.06 -7.59 -40.56 By element: Atomic # 1 Polarization: 19.94 SS G_CDS: -5.47 Total: 14.47 kcal Atomic # 6 Polarization: 11.92 SS G_CDS: -2.98 Total: 8.94 kcal Atomic # 7 Polarization: -66.95 SS G_CDS: 0.17 Total: -66.78 kcal Atomic # 8 Polarization: -20.04 SS G_CDS: 0.16 Total: -19.88 kcal Atomic # 9 Polarization: -2.44 SS G_CDS: 0.04 Total: -2.40 kcal Atomic # 14 Polarization: 24.60 SS G_CDS: -5.11 Total: 19.49 kcal Total LS contribution 5.61 Total: 5.61 kcal Total: -32.97 -7.59 -40.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282468074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.149 kcal (2) G-P(sol) polarization free energy of solvation -32.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.118 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.589 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds