Wall clock time and date at job start Tue Mar 31 2020 20:52:22
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 H 1.08990 * 109.47352 * 2 1
4 4 C 1.52998 * 109.47022 * 120.00014 * 2 1 3
5 5 N 1.46503 * 109.47318 * 174.99859 * 4 2 1
6 6 C 1.34767 * 119.99941 * 180.02562 * 5 4 2
7 7 O 1.21611 * 120.00395 * 359.97438 * 6 5 4
8 8 C 1.47365 * 119.99748 * 179.97438 * 6 5 4
9 9 C 1.39953 * 120.22075 * 269.99989 * 8 6 5
10 10 F 1.35104 * 120.07415 * 359.97438 * 9 8 6
11 11 C 1.38138 * 119.85127 * 179.97438 * 9 8 6
12 12 C 1.38443 * 120.29787 * 0.02562 * 11 9 8
13 13 C 1.38091 * 120.45361 * 359.97438 * 12 11 9
14 14 C 1.38780 * 120.13950 * 359.74274 * 13 12 11
15 15 N 1.39283 * 120.15140 * 180.27557 * 14 13 12
16 16 C 1.34774 * 120.00202 * 18.59606 * 15 14 13
17 17 N 1.34779 * 120.00313 * 185.79824 * 16 15 14
18 18 O 1.21578 * 119.99815 * 5.80393 * 16 15 14
19 19 N 1.46497 * 109.46863 * 239.99983 * 2 1 3
20 20 C 1.46508 * 120.00156 * 300.00194 * 19 2 1
21 21 C 1.36935 * 120.00229 * 120.00623 * 19 2 1
22 22 H 1.08004 * 119.99788 * 341.18843 * 21 19 2
23 23 C 1.38810 * 120.00402 * 161.18950 * 21 19 2
24 24 N 1.31622 * 119.99921 * 324.09477 * 23 21 19
25 25 Si 1.86802 * 119.99899 * 144.36563 * 23 21 19
26 26 H 1.48504 * 109.47196 * 179.72513 * 25 23 21
27 27 H 1.48502 * 109.47184 * 299.72320 * 25 23 21
28 28 H 1.48497 * 109.47327 * 59.72580 * 25 23 21
29 29 H 1.09000 * 109.46861 * 59.99840 * 1 2 3
30 30 H 1.08997 * 109.47166 * 179.97438 * 1 2 3
31 31 H 1.08999 * 109.47208 * 300.00399 * 1 2 3
32 32 H 1.09002 * 109.47037 * 295.00165 * 4 2 1
33 33 H 1.09004 * 109.47206 * 54.99919 * 4 2 1
34 34 H 0.96995 * 119.99593 * 359.97438 * 5 4 2
35 35 H 1.07993 * 119.84928 * 179.97438 * 11 9 8
36 36 H 1.07999 * 119.76886 * 180.02562 * 12 11 9
37 37 H 1.07995 * 119.92812 * 179.97438 * 13 12 11
38 38 H 0.96998 * 120.00000 * 198.59555 * 15 14 13
39 39 H 0.96997 * 119.99583 * 0.02562 * 17 16 15
40 40 H 0.97004 * 119.99825 * 180.02562 * 17 16 15
41 41 H 1.09005 * 109.46754 * 273.14604 * 20 19 2
42 42 H 1.08994 * 109.47050 * 33.14299 * 20 19 2
43 43 H 1.09001 * 109.47070 * 153.14689 * 20 19 2
44 44 H 0.96994 * 119.99667 * 356.83156 * 24 23 21
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.8934 1.0276 0.0000
4 6 2.0400 -0.7212 1.2492
5 7 3.5001 -0.8264 1.1906
6 6 4.1729 -1.4292 2.1907
7 8 3.5682 -1.8854 3.1420
8 6 5.6415 -1.5355 2.1314
9 6 6.2437 -2.6471 1.5309
10 9 5.4796 -3.6283 1.0031
11 6 7.6210 -2.7386 1.4791
12 6 8.4085 -1.7361 2.0189
13 6 7.8275 -0.6339 2.6144
14 6 6.4455 -0.5201 2.6714
15 7 5.8593 0.5942 3.2668
16 6 6.5800 1.7184 3.4489
17 7 6.0513 2.7552 4.1286
18 8 7.7070 1.7973 2.9999
19 7 2.0183 -0.6906 -1.1962
20 6 1.6643 -2.0932 -1.4280
21 6 2.8056 -0.0252 -2.0975
22 1 2.8230 1.0546 -2.1055
23 6 3.5814 -0.7385 -3.0010
24 7 4.1393 -1.8737 -2.6369
25 14 3.8396 -0.0836 -4.7313
26 1 4.7052 -1.0209 -5.4913
27 1 2.5269 0.0419 -5.4141
28 1 4.4921 1.2486 -4.6641
29 1 -0.3633 0.5139 -0.8900
30 1 -0.3633 -1.0276 -0.0005
31 1 -0.3633 0.5139 0.8899
32 1 1.7516 -0.1583 2.1370
33 1 1.6053 -1.7198 1.2952
34 1 3.9823 -0.4629 0.4316
35 1 8.0856 -3.5965 1.0161
36 1 9.4845 -1.8162 1.9733
37 1 8.4498 0.1430 3.0332
38 1 4.9322 0.5612 3.5504
39 1 5.1522 2.6921 4.4871
40 1 6.5699 3.5645 4.2593
41 1 2.3848 -2.7378 -0.9245
42 1 0.6666 -2.2861 -1.0338
43 1 1.6783 -2.2993 -2.4983
44 1 4.0466 -2.1887 -1.7242
RHF calculation, no. of doubly occupied orbitals= 63
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988).
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001282468074.mol2 44
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Tue Mar 31 2020 20:52:22
Heat of formation + Delta-G solvation = -78.398237 kcal
Electronic energy + Delta-G solvation = -30713.570167 eV
Core-core repulsion = 26387.519136 eV
Total energy + Delta-G solvation = -4326.051031 eV
No. of doubly occupied orbitals = 63
Molecular weight
(most abundant/longest-lived isotopes) = 338.154 amu
Computer time = 0.80 seconds
Orbital eigenvalues (eV)
-50.09909 -42.12111 -40.80462 -39.29941 -38.51529 -36.03160 -35.60499 -34.78038
-33.97615 -32.15434 -30.97254 -30.45392 -28.11192 -27.44986 -25.00341 -24.61761
-24.45136 -22.20941 -21.68573 -21.14947 -19.78938 -19.52482 -19.45385 -18.74274
-17.78926 -17.52158 -17.35971 -16.89923 -16.66268 -16.57742 -16.33010 -16.12117
-15.68449 -15.57580 -15.52742 -15.40735 -14.84666 -14.68880 -14.27430 -13.87958
-13.82436 -13.78136 -13.32911 -13.21230 -12.88593 -12.79642 -12.69170 -12.49910
-12.34426 -11.91280 -11.85934 -11.83446 -11.46258 -11.33202 -11.17966 -10.79800
-10.32159 -10.16732 -9.97791 -9.25906 -8.98453 -8.28548 -5.23130 -0.17070
0.05953 1.23380 1.47173 1.60027 1.65953 1.83111 1.84577 2.11193
2.54526 2.66385 3.10282 3.19498 3.26158 3.46808 3.54890 3.81819
3.90515 3.93380 4.19620 4.25947 4.27749 4.48501 4.54916 4.61959
4.68900 4.74049 4.85273 4.90445 4.97687 5.01674 5.11493 5.18447
5.19775 5.28854 5.29508 5.45996 5.60930 5.79962 5.87033 5.90305
6.34299 6.42324 6.64753 6.94124 7.05868 7.33678 7.83200 8.23579
9.02406
Molecular weight = 338.15amu
Principal moments of inertia in cm(-1)
A = 0.009698 B = 0.004479 C = 0.004189
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 2886.627183 B = 6249.647806 C = 6682.092489
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.147 4.147
2 C 0.158 3.842
3 H 0.071 0.929
4 C 0.106 3.894
5 N -0.690 5.690
6 C 0.563 3.437
7 O -0.571 6.571
8 C -0.222 4.222
9 C 0.131 3.869
10 F -0.146 7.146
11 C -0.176 4.176
12 C -0.038 4.038
13 C -0.163 4.163
14 C 0.227 3.773
15 N -0.671 5.671
16 C 0.706 3.294
17 N -0.832 5.832
18 O -0.601 6.601
19 N -0.602 5.602
20 C 0.150 3.850
21 C -0.369 4.369
22 H 0.056 0.944
23 C -0.060 4.060
24 N -0.923 5.923
25 Si 1.098 2.902
26 H -0.299 1.299
27 H -0.286 1.286
28 H -0.279 1.279
29 H 0.053 0.947
30 H 0.049 0.951
31 H 0.081 0.919
32 H 0.085 0.915
33 H 0.044 0.956
34 H 0.407 0.593
35 H 0.162 0.838
36 H 0.180 0.820
37 H 0.173 0.827
38 H 0.416 0.584
39 H 0.416 0.584
40 H 0.430 0.570
41 H -0.017 1.017
42 H 0.045 0.955
43 H 0.024 0.976
44 H 0.258 0.742
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 3.432 7.187 14.344 16.407
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.206 4.206
2 C 0.051 3.949
3 H 0.089 0.911
4 C -0.019 4.019
5 N -0.338 5.338
6 C 0.348 3.652
7 O -0.451 6.451
8 C -0.229 4.229
9 C 0.110 3.890
10 F -0.125 7.125
11 C -0.196 4.196
12 C -0.056 4.056
13 C -0.183 4.183
14 C 0.128 3.872
15 N -0.316 5.316
16 C 0.405 3.595
17 N -0.402 5.402
18 O -0.480 6.480
19 N -0.326 5.326
20 C 0.004 3.996
21 C -0.498 4.498
22 H 0.074 0.926
23 C -0.260 4.260
24 N -0.563 5.563
25 Si 0.925 3.075
26 H -0.225 1.225
27 H -0.213 1.213
28 H -0.205 1.205
29 H 0.072 0.928
30 H 0.068 0.932
31 H 0.100 0.900
32 H 0.103 0.897
33 H 0.063 0.937
34 H 0.242 0.758
35 H 0.180 0.820
36 H 0.198 0.802
37 H 0.190 0.810
38 H 0.252 0.748
39 H 0.247 0.753
40 H 0.266 0.734
41 H 0.001 0.999
42 H 0.063 0.937
43 H 0.043 0.957
44 H 0.068 0.932
Dipole moment (debyes) X Y Z Total
from point charges 4.505 6.583 13.145 15.376
hybrid contribution -1.536 0.047 1.068 1.872
sum 2.969 6.630 14.214 15.962
Atomic orbital electron populations
1.22024 0.94505 1.01765 1.02300 1.20850 0.94636 0.95416 0.84037
0.91101 1.22079 0.78991 1.00701 1.00127 1.46048 1.08675 1.56823
1.22213 1.18082 0.86818 0.77695 0.82568 1.90743 1.70272 1.49220
1.34911 1.19433 0.93423 0.99142 1.10928 1.17761 0.90043 0.85373
0.95774 1.91514 1.76420 1.60451 1.84106 1.21377 0.89805 1.03427
1.04947 1.21475 1.02057 0.90063 0.92039 1.21944 0.92182 1.00867
1.03296 1.17187 0.92182 0.84904 0.92912 1.42389 1.16113 1.11170
1.61925 1.16005 0.83957 0.80351 0.79186 1.42752 1.21693 1.16957
1.58753 1.90858 1.19539 1.81926 1.55703 1.44103 1.57328 1.08950
1.22219 1.20663 0.95787 0.85162 0.97961 1.19988 1.23923 0.91612
1.14270 0.92595 1.26658 0.94588 0.97759 1.07002 1.70925 1.37834
1.26551 1.21026 0.83066 0.75990 0.75008 0.73460 1.22535 1.21284
1.20478 0.92790 0.93226 0.89971 0.89670 0.93730 0.75784 0.82009
0.80227 0.80989 0.74752 0.75311 0.73436 0.99926 0.93663 0.95712
0.93167
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 16.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -4.31 9.17 71.98 0.66 -3.65 16
2 C 0.16 5.68 2.88 44.99 0.13 5.81 16
3 H 0.07 2.54 7.84 -2.39 -0.02 2.53 16
4 C 0.11 3.71 4.97 86.38 0.43 4.14 16
5 N -0.69 -26.43 5.38 -466.43 -2.51 -28.94 16
6 C 0.56 21.68 5.73 86.65 0.50 22.18 16
7 O -0.57 -23.97 17.11 -4.07 -0.07 -24.04 16
8 C -0.22 -7.94 5.65 -19.95 -0.11 -8.06 16
9 C 0.13 4.77 7.29 22.66 0.17 4.94 16
10 F -0.15 -6.18 16.83 44.97 0.76 -5.42 16
11 C -0.18 -4.94 10.00 22.29 0.22 -4.72 16
12 C -0.04 -0.89 10.02 22.28 0.22 -0.67 16
13 C -0.16 -4.42 8.78 22.36 0.20 -4.23 16
14 C 0.23 6.91 6.52 38.60 0.25 7.16 16
15 N -0.67 -16.62 5.24 -316.64 -1.66 -18.28 16
16 C 0.71 16.15 8.68 179.05 1.55 17.71 16
17 N -0.83 -10.24 8.88 -184.75 -1.64 -11.88 16
18 O -0.60 -17.67 14.02 -3.96 -0.06 -17.72 16
19 N -0.60 -27.50 2.21 -702.78 -1.55 -29.05 16
20 C 0.15 7.06 8.20 127.77 1.05 8.11 16
21 C -0.37 -19.07 9.12 84.03 0.77 -18.30 16
22 H 0.06 2.90 7.95 -2.91 -0.02 2.87 16
23 C -0.06 -3.28 4.43 84.86 0.38 -2.91 16
24 N -0.92 -54.38 12.74 21.65 0.28 -54.10 16
25 Si 1.10 50.00 30.04 68.60 2.06 52.06 16
26 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16
27 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16
28 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16
29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16
30 H 0.05 1.48 6.68 -2.39 -0.02 1.46 16
31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16
32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16
33 H 0.04 1.71 7.84 -2.38 -0.02 1.69 16
34 H 0.41 17.51 7.87 -92.71 -0.73 16.78 16
35 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16
36 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16
37 H 0.17 4.61 5.34 -2.98 -0.02 4.60 16
38 H 0.42 9.29 7.76 -92.71 -0.72 8.57 16
39 H 0.42 2.83 8.85 -92.71 -0.82 2.01 16
40 H 0.43 3.86 8.93 -92.71 -0.83 3.03 16
41 H -0.02 -0.90 7.07 -2.38 -0.02 -0.92 16
42 H 0.04 1.84 6.44 -2.39 -0.02 1.82 16
43 H 0.02 1.27 7.10 -2.39 -0.02 1.25 16
44 H 0.26 15.61 6.66 -92.71 -0.62 14.99 16
Total: -1.00 -73.46 372.06 0.17 -73.28
By element:
Atomic # 1 Polarization: 38.44 SS G_CDS: -1.84 Total: 36.60 kcal
Atomic # 6 Polarization: 21.09 SS G_CDS: 6.41 Total: 27.50 kcal
Atomic # 7 Polarization: -135.17 SS G_CDS: -7.08 Total: -142.25 kcal
Atomic # 8 Polarization: -41.64 SS G_CDS: -0.13 Total: -41.77 kcal
Atomic # 9 Polarization: -6.18 SS G_CDS: 0.76 Total: -5.42 kcal
Atomic # 14 Polarization: 50.00 SS G_CDS: 2.06 Total: 52.06 kcal
Total: -73.46 0.17 -73.28 kcal
The number of atoms in the molecule is 44
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001282468074.mol2 44
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -5.115 kcal
(2) G-P(sol) polarization free energy of solvation -73.456 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.571 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal
(6) G-S(sol) free energy of system = (1) + (5) -78.398 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.80 seconds