Wall clock time and date at job start Tue Mar 31 2020 20:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08990 * 109.47352 * 2 1 4 4 C 1.52998 * 109.47022 * 120.00014 * 2 1 3 5 5 N 1.46503 * 109.47318 * 174.99859 * 4 2 1 6 6 C 1.34767 * 119.99941 * 180.02562 * 5 4 2 7 7 O 1.21611 * 120.00395 * 359.97438 * 6 5 4 8 8 C 1.47365 * 119.99748 * 179.97438 * 6 5 4 9 9 C 1.39953 * 120.22075 * 269.99989 * 8 6 5 10 10 F 1.35104 * 120.07415 * 359.97438 * 9 8 6 11 11 C 1.38138 * 119.85127 * 179.97438 * 9 8 6 12 12 C 1.38443 * 120.29787 * 0.02562 * 11 9 8 13 13 C 1.38091 * 120.45361 * 359.97438 * 12 11 9 14 14 C 1.38780 * 120.13950 * 359.74274 * 13 12 11 15 15 N 1.39283 * 120.15140 * 180.27557 * 14 13 12 16 16 C 1.34774 * 120.00202 * 18.59606 * 15 14 13 17 17 N 1.34779 * 120.00313 * 185.79824 * 16 15 14 18 18 O 1.21578 * 119.99815 * 5.80393 * 16 15 14 19 19 N 1.46497 * 109.46863 * 239.99983 * 2 1 3 20 20 C 1.46508 * 120.00156 * 300.00194 * 19 2 1 21 21 C 1.36935 * 120.00229 * 120.00623 * 19 2 1 22 22 H 1.08004 * 119.99788 * 341.18843 * 21 19 2 23 23 C 1.38810 * 120.00402 * 161.18950 * 21 19 2 24 24 N 1.31622 * 119.99921 * 324.09477 * 23 21 19 25 25 Si 1.86802 * 119.99899 * 144.36563 * 23 21 19 26 26 H 1.48504 * 109.47196 * 179.72513 * 25 23 21 27 27 H 1.48502 * 109.47184 * 299.72320 * 25 23 21 28 28 H 1.48497 * 109.47327 * 59.72580 * 25 23 21 29 29 H 1.09000 * 109.46861 * 59.99840 * 1 2 3 30 30 H 1.08997 * 109.47166 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47208 * 300.00399 * 1 2 3 32 32 H 1.09002 * 109.47037 * 295.00165 * 4 2 1 33 33 H 1.09004 * 109.47206 * 54.99919 * 4 2 1 34 34 H 0.96995 * 119.99593 * 359.97438 * 5 4 2 35 35 H 1.07993 * 119.84928 * 179.97438 * 11 9 8 36 36 H 1.07999 * 119.76886 * 180.02562 * 12 11 9 37 37 H 1.07995 * 119.92812 * 179.97438 * 13 12 11 38 38 H 0.96998 * 120.00000 * 198.59555 * 15 14 13 39 39 H 0.96997 * 119.99583 * 0.02562 * 17 16 15 40 40 H 0.97004 * 119.99825 * 180.02562 * 17 16 15 41 41 H 1.09005 * 109.46754 * 273.14604 * 20 19 2 42 42 H 1.08994 * 109.47050 * 33.14299 * 20 19 2 43 43 H 1.09001 * 109.47070 * 153.14689 * 20 19 2 44 44 H 0.96994 * 119.99667 * 356.83156 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8264 1.1906 6 6 4.1729 -1.4292 2.1907 7 8 3.5682 -1.8854 3.1420 8 6 5.6415 -1.5355 2.1314 9 6 6.2437 -2.6471 1.5309 10 9 5.4796 -3.6283 1.0031 11 6 7.6210 -2.7386 1.4791 12 6 8.4085 -1.7361 2.0189 13 6 7.8275 -0.6339 2.6144 14 6 6.4455 -0.5201 2.6714 15 7 5.8593 0.5942 3.2668 16 6 6.5800 1.7184 3.4489 17 7 6.0513 2.7552 4.1286 18 8 7.7070 1.7973 2.9999 19 7 2.0183 -0.6906 -1.1962 20 6 1.6643 -2.0932 -1.4280 21 6 2.8056 -0.0252 -2.0975 22 1 2.8230 1.0546 -2.1055 23 6 3.5814 -0.7385 -3.0010 24 7 4.1393 -1.8737 -2.6369 25 14 3.8396 -0.0836 -4.7313 26 1 4.7052 -1.0209 -5.4913 27 1 2.5269 0.0419 -5.4141 28 1 4.4921 1.2486 -4.6641 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5139 0.8899 32 1 1.7516 -0.1583 2.1370 33 1 1.6053 -1.7198 1.2952 34 1 3.9823 -0.4629 0.4316 35 1 8.0856 -3.5965 1.0161 36 1 9.4845 -1.8162 1.9733 37 1 8.4498 0.1430 3.0332 38 1 4.9322 0.5612 3.5504 39 1 5.1522 2.6921 4.4871 40 1 6.5699 3.5645 4.2593 41 1 2.3848 -2.7378 -0.9245 42 1 0.6666 -2.2861 -1.0338 43 1 1.6783 -2.2993 -2.4983 44 1 4.0466 -2.1887 -1.7242 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001282468074.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:52:22 Heat of formation + Delta-G solvation = -78.398237 kcal Electronic energy + Delta-G solvation = -30713.570167 eV Core-core repulsion = 26387.519136 eV Total energy + Delta-G solvation = -4326.051031 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -50.09909 -42.12111 -40.80462 -39.29941 -38.51529 -36.03160 -35.60499 -34.78038 -33.97615 -32.15434 -30.97254 -30.45392 -28.11192 -27.44986 -25.00341 -24.61761 -24.45136 -22.20941 -21.68573 -21.14947 -19.78938 -19.52482 -19.45385 -18.74274 -17.78926 -17.52158 -17.35971 -16.89923 -16.66268 -16.57742 -16.33010 -16.12117 -15.68449 -15.57580 -15.52742 -15.40735 -14.84666 -14.68880 -14.27430 -13.87958 -13.82436 -13.78136 -13.32911 -13.21230 -12.88593 -12.79642 -12.69170 -12.49910 -12.34426 -11.91280 -11.85934 -11.83446 -11.46258 -11.33202 -11.17966 -10.79800 -10.32159 -10.16732 -9.97791 -9.25906 -8.98453 -8.28548 -5.23130 -0.17070 0.05953 1.23380 1.47173 1.60027 1.65953 1.83111 1.84577 2.11193 2.54526 2.66385 3.10282 3.19498 3.26158 3.46808 3.54890 3.81819 3.90515 3.93380 4.19620 4.25947 4.27749 4.48501 4.54916 4.61959 4.68900 4.74049 4.85273 4.90445 4.97687 5.01674 5.11493 5.18447 5.19775 5.28854 5.29508 5.45996 5.60930 5.79962 5.87033 5.90305 6.34299 6.42324 6.64753 6.94124 7.05868 7.33678 7.83200 8.23579 9.02406 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009698 B = 0.004479 C = 0.004189 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2886.627183 B = 6249.647806 C = 6682.092489 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.158 3.842 3 H 0.071 0.929 4 C 0.106 3.894 5 N -0.690 5.690 6 C 0.563 3.437 7 O -0.571 6.571 8 C -0.222 4.222 9 C 0.131 3.869 10 F -0.146 7.146 11 C -0.176 4.176 12 C -0.038 4.038 13 C -0.163 4.163 14 C 0.227 3.773 15 N -0.671 5.671 16 C 0.706 3.294 17 N -0.832 5.832 18 O -0.601 6.601 19 N -0.602 5.602 20 C 0.150 3.850 21 C -0.369 4.369 22 H 0.056 0.944 23 C -0.060 4.060 24 N -0.923 5.923 25 Si 1.098 2.902 26 H -0.299 1.299 27 H -0.286 1.286 28 H -0.279 1.279 29 H 0.053 0.947 30 H 0.049 0.951 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.044 0.956 34 H 0.407 0.593 35 H 0.162 0.838 36 H 0.180 0.820 37 H 0.173 0.827 38 H 0.416 0.584 39 H 0.416 0.584 40 H 0.430 0.570 41 H -0.017 1.017 42 H 0.045 0.955 43 H 0.024 0.976 44 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.432 7.187 14.344 16.407 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.051 3.949 3 H 0.089 0.911 4 C -0.019 4.019 5 N -0.338 5.338 6 C 0.348 3.652 7 O -0.451 6.451 8 C -0.229 4.229 9 C 0.110 3.890 10 F -0.125 7.125 11 C -0.196 4.196 12 C -0.056 4.056 13 C -0.183 4.183 14 C 0.128 3.872 15 N -0.316 5.316 16 C 0.405 3.595 17 N -0.402 5.402 18 O -0.480 6.480 19 N -0.326 5.326 20 C 0.004 3.996 21 C -0.498 4.498 22 H 0.074 0.926 23 C -0.260 4.260 24 N -0.563 5.563 25 Si 0.925 3.075 26 H -0.225 1.225 27 H -0.213 1.213 28 H -0.205 1.205 29 H 0.072 0.928 30 H 0.068 0.932 31 H 0.100 0.900 32 H 0.103 0.897 33 H 0.063 0.937 34 H 0.242 0.758 35 H 0.180 0.820 36 H 0.198 0.802 37 H 0.190 0.810 38 H 0.252 0.748 39 H 0.247 0.753 40 H 0.266 0.734 41 H 0.001 0.999 42 H 0.063 0.937 43 H 0.043 0.957 44 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 4.505 6.583 13.145 15.376 hybrid contribution -1.536 0.047 1.068 1.872 sum 2.969 6.630 14.214 15.962 Atomic orbital electron populations 1.22024 0.94505 1.01765 1.02300 1.20850 0.94636 0.95416 0.84037 0.91101 1.22079 0.78991 1.00701 1.00127 1.46048 1.08675 1.56823 1.22213 1.18082 0.86818 0.77695 0.82568 1.90743 1.70272 1.49220 1.34911 1.19433 0.93423 0.99142 1.10928 1.17761 0.90043 0.85373 0.95774 1.91514 1.76420 1.60451 1.84106 1.21377 0.89805 1.03427 1.04947 1.21475 1.02057 0.90063 0.92039 1.21944 0.92182 1.00867 1.03296 1.17187 0.92182 0.84904 0.92912 1.42389 1.16113 1.11170 1.61925 1.16005 0.83957 0.80351 0.79186 1.42752 1.21693 1.16957 1.58753 1.90858 1.19539 1.81926 1.55703 1.44103 1.57328 1.08950 1.22219 1.20663 0.95787 0.85162 0.97961 1.19988 1.23923 0.91612 1.14270 0.92595 1.26658 0.94588 0.97759 1.07002 1.70925 1.37834 1.26551 1.21026 0.83066 0.75990 0.75008 0.73460 1.22535 1.21284 1.20478 0.92790 0.93226 0.89971 0.89670 0.93730 0.75784 0.82009 0.80227 0.80989 0.74752 0.75311 0.73436 0.99926 0.93663 0.95712 0.93167 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.31 9.17 71.98 0.66 -3.65 16 2 C 0.16 5.68 2.88 44.99 0.13 5.81 16 3 H 0.07 2.54 7.84 -2.39 -0.02 2.53 16 4 C 0.11 3.71 4.97 86.38 0.43 4.14 16 5 N -0.69 -26.43 5.38 -466.43 -2.51 -28.94 16 6 C 0.56 21.68 5.73 86.65 0.50 22.18 16 7 O -0.57 -23.97 17.11 -4.07 -0.07 -24.04 16 8 C -0.22 -7.94 5.65 -19.95 -0.11 -8.06 16 9 C 0.13 4.77 7.29 22.66 0.17 4.94 16 10 F -0.15 -6.18 16.83 44.97 0.76 -5.42 16 11 C -0.18 -4.94 10.00 22.29 0.22 -4.72 16 12 C -0.04 -0.89 10.02 22.28 0.22 -0.67 16 13 C -0.16 -4.42 8.78 22.36 0.20 -4.23 16 14 C 0.23 6.91 6.52 38.60 0.25 7.16 16 15 N -0.67 -16.62 5.24 -316.64 -1.66 -18.28 16 16 C 0.71 16.15 8.68 179.05 1.55 17.71 16 17 N -0.83 -10.24 8.88 -184.75 -1.64 -11.88 16 18 O -0.60 -17.67 14.02 -3.96 -0.06 -17.72 16 19 N -0.60 -27.50 2.21 -702.78 -1.55 -29.05 16 20 C 0.15 7.06 8.20 127.77 1.05 8.11 16 21 C -0.37 -19.07 9.12 84.03 0.77 -18.30 16 22 H 0.06 2.90 7.95 -2.91 -0.02 2.87 16 23 C -0.06 -3.28 4.43 84.86 0.38 -2.91 16 24 N -0.92 -54.38 12.74 21.65 0.28 -54.10 16 25 Si 1.10 50.00 30.04 68.60 2.06 52.06 16 26 H -0.30 -14.13 7.11 99.48 0.71 -13.42 16 27 H -0.29 -12.49 7.11 99.48 0.71 -11.78 16 28 H -0.28 -11.90 7.11 99.48 0.71 -11.19 16 29 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 30 H 0.05 1.48 6.68 -2.39 -0.02 1.46 16 31 H 0.08 1.86 8.14 -2.39 -0.02 1.84 16 32 H 0.09 2.49 8.14 -2.39 -0.02 2.47 16 33 H 0.04 1.71 7.84 -2.38 -0.02 1.69 16 34 H 0.41 17.51 7.87 -92.71 -0.73 16.78 16 35 H 0.16 3.73 8.06 -2.91 -0.02 3.71 16 36 H 0.18 2.68 8.06 -2.91 -0.02 2.66 16 37 H 0.17 4.61 5.34 -2.98 -0.02 4.60 16 38 H 0.42 9.29 7.76 -92.71 -0.72 8.57 16 39 H 0.42 2.83 8.85 -92.71 -0.82 2.01 16 40 H 0.43 3.86 8.93 -92.71 -0.83 3.03 16 41 H -0.02 -0.90 7.07 -2.38 -0.02 -0.92 16 42 H 0.04 1.84 6.44 -2.39 -0.02 1.82 16 43 H 0.02 1.27 7.10 -2.39 -0.02 1.25 16 44 H 0.26 15.61 6.66 -92.71 -0.62 14.99 16 Total: -1.00 -73.46 372.06 0.17 -73.28 By element: Atomic # 1 Polarization: 38.44 SS G_CDS: -1.84 Total: 36.60 kcal Atomic # 6 Polarization: 21.09 SS G_CDS: 6.41 Total: 27.50 kcal Atomic # 7 Polarization: -135.17 SS G_CDS: -7.08 Total: -142.25 kcal Atomic # 8 Polarization: -41.64 SS G_CDS: -0.13 Total: -41.77 kcal Atomic # 9 Polarization: -6.18 SS G_CDS: 0.76 Total: -5.42 kcal Atomic # 14 Polarization: 50.00 SS G_CDS: 2.06 Total: 52.06 kcal Total: -73.46 0.17 -73.28 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001282468074.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.115 kcal (2) G-P(sol) polarization free energy of solvation -73.456 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.571 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.284 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds