Wall clock time and date at job start Tue Mar 31 2020 21:01:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47263 * 228.31300 * 3 2 1 5 5 C 1.50695 * 112.84871 * 296.23462 * 4 3 2 6 6 O 1.21279 * 120.00088 * 113.54817 * 5 4 3 7 7 N 1.34780 * 120.00146 * 293.54474 * 5 4 3 8 8 C 1.46493 * 120.00181 * 175.02157 * 7 5 4 9 9 H 1.09001 * 109.46993 * 34.99913 * 8 7 5 10 10 C 1.53000 * 109.47291 * 275.00144 * 8 7 5 11 11 C 1.52994 * 109.47596 * 154.99949 * 8 7 5 12 12 N 1.46500 * 109.46934 * 305.00370 * 11 8 7 13 13 C 1.34787 * 119.99789 * 179.97438 * 12 11 8 14 14 O 1.21275 * 119.99821 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99791 * 179.97438 * 13 12 11 16 16 S 1.80992 * 109.47275 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00427 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99500 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00550 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99649 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00306 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46912 * 60.00053 * 21 19 17 23 23 H 1.48500 * 109.47185 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47289 * 300.00416 * 21 19 17 25 25 C 1.53784 * 113.68796 * 67.50262 * 4 3 2 26 26 C 1.53782 * 87.08109 * 89.12675 * 25 4 3 27 27 C 1.53777 * 113.61272 * 165.03693 * 4 3 2 28 28 H 4.44649 * 5.63362 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47391 * 108.31152 * 3 2 1 30 30 H 1.09006 * 109.47363 * 348.31508 * 3 2 1 31 31 H 0.97001 * 119.99987 * 355.02505 * 7 5 4 32 32 H 1.09002 * 109.47285 * 300.00213 * 10 8 7 33 33 H 1.08997 * 109.47454 * 179.97438 * 10 8 7 34 34 H 1.09003 * 109.46891 * 59.99825 * 10 8 7 35 35 H 1.08999 * 109.46847 * 64.99970 * 11 8 7 36 36 H 1.08997 * 109.47652 * 184.99888 * 11 8 7 37 37 H 0.96999 * 120.00083 * 359.97438 * 12 11 8 38 38 H 1.08999 * 109.47260 * 300.00160 * 15 13 12 39 39 H 1.09007 * 109.47306 * 59.99962 * 15 13 12 40 40 H 0.96997 * 120.00038 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.61096 * 203.67245 * 25 4 3 42 42 H 1.08991 * 113.61605 * 334.57716 * 25 4 3 43 43 H 1.08997 * 113.61674 * 270.88611 * 26 25 4 44 44 H 1.09002 * 113.61498 * 139.97993 * 26 25 4 45 45 H 1.09002 * 113.62092 * 25.35028 * 27 4 3 46 46 H 1.09000 * 113.61389 * 156.25132 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9602 1.0772 5 6 2.7712 2.3933 0.8136 6 8 1.9991 2.9607 1.5571 7 7 3.2856 3.0446 -0.2484 8 6 2.8299 4.3997 -0.5677 9 1 2.6192 4.9392 0.3557 10 6 1.5585 4.3238 -1.4154 11 6 3.9210 5.1338 -1.3495 12 7 5.1723 5.1024 -0.5882 13 6 6.2785 5.6904 -1.0854 14 8 6.2381 6.2451 -2.1632 15 6 7.5655 5.6587 -0.3020 16 16 8.8565 6.5269 -1.2269 17 6 10.2091 6.3400 -0.1135 18 1 10.0730 5.8091 0.8172 19 6 11.4499 6.8739 -0.4328 20 7 11.6159 7.5204 -1.5673 21 14 12.8841 6.6750 0.7474 22 1 13.1578 5.2302 0.9547 23 1 14.0888 7.3297 0.1772 24 1 12.5459 7.3062 2.0482 25 6 2.8537 0.4953 2.5117 26 6 4.1965 -0.2529 2.4678 27 6 4.6444 0.7736 1.4140 28 1 -1.0501 0.0000 -0.0003 29 1 3.0092 0.3237 -0.9757 30 1 3.0098 -1.0056 0.2081 31 1 3.9574 2.6159 -0.8014 32 1 1.7691 3.7843 -2.3388 33 1 1.2192 5.3321 -1.6526 34 1 0.7811 3.8009 -0.8584 35 1 4.0693 4.6451 -2.3125 36 1 3.6192 6.1688 -1.5101 37 1 5.2047 4.6585 0.2736 38 1 7.4172 6.1480 0.6606 39 1 7.8673 4.6237 -0.1407 40 1 12.4831 7.8932 -1.7907 41 1 2.8301 1.3077 3.2381 42 1 1.9887 -0.1639 2.5841 43 1 4.1177 -1.2691 2.0815 44 1 4.7589 -0.1957 3.3998 45 1 5.2251 0.3391 0.6003 46 1 5.1103 1.6621 1.8403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284201920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:28 Heat of formation + Delta-G solvation = -12.098880 kcal Electronic energy + Delta-G solvation = -26560.403934 eV Core-core repulsion = 22771.148284 eV Total energy + Delta-G solvation = -3789.255650 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -41.13377 -39.38882 -38.33871 -36.36355 -34.04354 -33.66306 -32.44698 -31.54240 -29.53852 -29.29649 -26.15207 -26.01406 -25.60595 -25.32812 -22.19670 -20.94758 -20.37675 -19.48608 -18.64996 -17.88488 -17.26749 -16.78369 -16.29905 -16.02284 -15.80960 -15.35988 -15.06083 -14.82154 -14.68207 -14.34231 -14.07730 -13.74397 -13.58159 -13.48835 -13.09977 -12.93629 -12.82059 -12.74242 -12.56007 -12.22566 -12.12820 -11.82291 -11.62554 -11.29920 -11.26682 -11.06590 -11.05390 -10.83562 -10.78595 -10.50508 -10.44531 -9.85046 -9.82986 -9.50754 -9.37141 -9.08582 -8.97383 -8.26810 -6.52517 -6.23456 -3.94354 2.30320 2.48000 2.54901 2.79265 3.00470 3.05429 3.22083 3.26275 3.29586 3.67635 3.79960 4.00686 4.18670 4.28337 4.30205 4.36911 4.41463 4.59235 4.83079 4.97360 5.00842 5.09485 5.11532 5.11655 5.18075 5.32710 5.35831 5.38538 5.41177 5.51160 5.52528 5.62155 5.63733 5.67485 5.74521 5.75884 5.85038 5.90166 5.97985 6.10302 6.19160 6.51887 7.19754 7.30577 7.57260 7.62602 7.94964 8.33064 8.54662 9.21761 10.83889 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.002421 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.737171 B =11561.400383 C =12989.714831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.190 4.190 3 C 0.018 3.982 4 C -0.105 4.105 5 C 0.534 3.466 6 O -0.533 6.533 7 N -0.725 5.725 8 C 0.130 3.870 9 H 0.096 0.904 10 C -0.159 4.159 11 C 0.114 3.886 12 N -0.739 5.739 13 C 0.532 3.468 14 O -0.516 6.516 15 C -0.153 4.153 16 S -0.059 6.059 17 C -0.536 4.536 18 H 0.072 0.928 19 C 0.074 3.926 20 N -0.868 5.868 21 Si 0.919 3.081 22 H -0.274 1.274 23 H -0.283 1.283 24 H -0.274 1.274 25 C -0.110 4.110 26 C -0.142 4.142 27 C -0.125 4.125 28 H 0.216 0.784 29 H 0.093 0.907 30 H 0.100 0.900 31 H 0.403 0.597 32 H 0.061 0.939 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.072 0.928 36 H 0.082 0.918 37 H 0.398 0.602 38 H 0.089 0.911 39 H 0.089 0.911 40 H 0.269 0.731 41 H 0.092 0.908 42 H 0.072 0.928 43 H 0.084 0.916 44 H 0.075 0.925 45 H 0.081 0.919 46 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.710 -17.243 4.837 27.379 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.190 4.190 3 C -0.019 4.019 4 C -0.108 4.108 5 C 0.320 3.680 6 O -0.409 6.409 7 N -0.378 5.378 8 C 0.026 3.974 9 H 0.114 0.886 10 C -0.218 4.218 11 C -0.011 4.011 12 N -0.394 5.394 13 C 0.318 3.682 14 O -0.390 6.390 15 C -0.304 4.304 16 S 0.167 5.833 17 C -0.684 4.684 18 H 0.090 0.910 19 C -0.136 4.136 20 N -0.503 5.503 21 Si 0.745 3.255 22 H -0.199 1.199 23 H -0.208 1.208 24 H -0.199 1.199 25 C -0.148 4.148 26 C -0.179 4.179 27 C -0.163 4.163 28 H 0.233 0.767 29 H 0.111 0.889 30 H 0.118 0.882 31 H 0.237 0.763 32 H 0.080 0.920 33 H 0.089 0.911 34 H 0.082 0.918 35 H 0.091 0.909 36 H 0.100 0.900 37 H 0.232 0.768 38 H 0.107 0.893 39 H 0.107 0.893 40 H 0.079 0.921 41 H 0.111 0.889 42 H 0.091 0.909 43 H 0.102 0.898 44 H 0.093 0.907 45 H 0.100 0.900 46 H 0.110 0.890 Dipole moment (debyes) X Y Z Total from point charges -21.222 -15.775 3.428 26.664 hybrid contribution 1.026 -1.120 2.057 2.557 sum -20.195 -16.895 5.485 26.896 Atomic orbital electron populations 1.24879 0.95944 1.00210 1.00239 1.22759 0.94241 1.01066 1.00929 1.18424 0.85378 0.99821 0.98269 1.22144 0.98871 0.91990 0.97782 1.20298 0.79950 0.87826 0.79916 1.90695 1.34979 1.68352 1.46850 1.46113 1.44261 1.16819 1.30599 1.21239 0.93783 0.82792 0.99624 0.88638 1.22093 0.96867 1.02916 0.99940 1.21601 0.83122 1.01328 0.95046 1.45994 1.09803 1.59772 1.23880 1.20325 0.84348 0.77316 0.86201 1.90709 1.84644 1.42257 1.21379 1.23528 0.97374 1.05840 1.03664 1.85394 1.00390 1.70449 1.27020 1.22819 0.96345 1.42104 1.07176 0.90990 1.24992 0.98281 0.94492 0.95807 1.70005 1.24575 1.33870 1.21825 0.86224 0.80381 0.78531 0.80370 1.19939 1.20804 1.19931 1.22836 0.97891 1.00186 0.93858 1.22863 0.97060 0.98284 0.99727 1.23005 0.92844 1.00590 0.99859 0.76743 0.88914 0.88234 0.76272 0.92024 0.91074 0.91794 0.90929 0.90014 0.76761 0.89260 0.89257 0.92110 0.88940 0.90890 0.89754 0.90652 0.90000 0.89030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.63 19.25 29.55 0.57 -1.06 16 2 C -0.19 -1.65 12.25 -37.12 -0.45 -2.10 16 3 C 0.02 0.11 5.09 -29.52 -0.15 -0.04 16 4 C -0.10 -0.77 0.78 -154.85 -0.12 -0.89 16 5 C 0.53 5.24 6.22 -10.99 -0.07 5.17 16 6 O -0.53 -7.29 15.81 5.56 0.09 -7.20 16 7 N -0.73 -5.87 4.51 -53.81 -0.24 -6.11 16 8 C 0.13 1.16 2.77 -67.94 -0.19 0.97 16 9 H 0.10 0.99 7.51 -51.93 -0.39 0.60 16 10 C -0.16 -1.29 9.48 37.16 0.35 -0.93 16 11 C 0.11 1.19 5.23 -4.04 -0.02 1.17 16 12 N -0.74 -9.16 5.39 -60.30 -0.32 -9.48 16 13 C 0.53 9.45 7.85 -10.98 -0.09 9.36 16 14 O -0.52 -11.26 15.86 5.56 0.09 -11.17 16 15 C -0.15 -2.99 6.16 36.01 0.22 -2.77 16 16 S -0.06 -1.58 20.57 -107.50 -2.21 -3.79 16 17 C -0.54 -15.07 9.50 30.94 0.29 -14.77 16 18 H 0.07 1.91 7.80 -52.48 -0.41 1.50 16 19 C 0.07 2.08 5.49 -17.43 -0.10 1.98 16 20 N -0.87 -25.92 13.22 55.49 0.73 -25.19 16 21 Si 0.92 21.18 29.55 -169.99 -5.02 16.16 16 22 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 23 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 24 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 25 C -0.11 -0.86 6.73 -25.92 -0.17 -1.03 16 26 C -0.14 -0.82 7.73 -25.92 -0.20 -1.02 16 27 C -0.13 -0.75 7.22 -25.92 -0.19 -0.94 16 28 H 0.22 1.15 7.80 -54.08 -0.42 0.73 16 29 H 0.09 0.48 8.14 -51.93 -0.42 0.05 16 30 H 0.10 0.47 7.31 -51.93 -0.38 0.09 16 31 H 0.40 2.65 8.61 -40.82 -0.35 2.30 16 32 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 34 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.49 16 37 H 0.40 4.15 8.14 -40.82 -0.33 3.81 16 38 H 0.09 1.64 8.14 -51.92 -0.42 1.21 16 39 H 0.09 1.58 8.14 -51.91 -0.42 1.16 16 40 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 41 H 0.09 0.86 7.73 -51.93 -0.40 0.46 16 42 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 43 H 0.08 0.39 7.60 -51.93 -0.39 -0.01 16 44 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 45 H 0.08 0.38 8.10 -51.93 -0.42 -0.04 16 46 H 0.09 0.61 8.09 -51.93 -0.42 0.19 16 LS Contribution 405.96 15.07 6.12 6.12 Total: -1.00 -36.20 405.96 -8.35 -44.55 By element: Atomic # 1 Polarization: 10.27 SS G_CDS: -7.26 Total: 3.01 kcal Atomic # 6 Polarization: -6.59 SS G_CDS: -0.31 Total: -6.90 kcal Atomic # 7 Polarization: -40.95 SS G_CDS: 0.17 Total: -40.78 kcal Atomic # 8 Polarization: -18.55 SS G_CDS: 0.18 Total: -18.37 kcal Atomic # 14 Polarization: 21.18 SS G_CDS: -5.02 Total: 16.16 kcal Atomic # 16 Polarization: -1.58 SS G_CDS: -2.21 Total: -3.79 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -36.20 -8.35 -44.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.450 kcal (2) G-P(sol) polarization free energy of solvation -36.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.346 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.548 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds