Wall clock time and date at job start Tue Mar 31 2020 21:01:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17399 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53002 * 109.47263 * 228.31300 * 3 2 1 5 5 C 1.50695 * 112.84871 * 296.23462 * 4 3 2 6 6 O 1.21279 * 120.00088 * 113.54817 * 5 4 3 7 7 N 1.34780 * 120.00146 * 293.54474 * 5 4 3 8 8 C 1.46493 * 120.00181 * 175.02157 * 7 5 4 9 9 H 1.09001 * 109.46993 * 34.99913 * 8 7 5 10 10 C 1.53000 * 109.47291 * 275.00144 * 8 7 5 11 11 C 1.52994 * 109.47596 * 154.99949 * 8 7 5 12 12 N 1.46500 * 109.46934 * 305.00370 * 11 8 7 13 13 C 1.34787 * 119.99789 * 179.97438 * 12 11 8 14 14 O 1.21275 * 119.99821 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99791 * 179.97438 * 13 12 11 16 16 S 1.80992 * 109.47275 * 180.02562 * 15 13 12 17 17 C 1.76194 * 100.00427 * 180.02562 * 16 15 13 18 18 H 1.08004 * 119.99500 * 0.02562 * 17 16 15 19 19 C 1.38800 * 120.00550 * 179.97438 * 17 16 15 20 20 N 1.31633 * 119.99649 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00306 * 180.02562 * 19 17 16 22 22 H 1.48500 * 109.46912 * 60.00053 * 21 19 17 23 23 H 1.48500 * 109.47185 * 179.97438 * 21 19 17 24 24 H 1.48492 * 109.47289 * 300.00416 * 21 19 17 25 25 C 1.53784 * 113.68796 * 67.50262 * 4 3 2 26 26 C 1.53782 * 87.08109 * 89.12675 * 25 4 3 27 27 C 1.53777 * 113.61272 * 165.03693 * 4 3 2 28 28 H 4.44649 * 5.63362 * 179.97438 * 4 1 2 29 29 H 1.09005 * 109.47391 * 108.31152 * 3 2 1 30 30 H 1.09006 * 109.47363 * 348.31508 * 3 2 1 31 31 H 0.97001 * 119.99987 * 355.02505 * 7 5 4 32 32 H 1.09002 * 109.47285 * 300.00213 * 10 8 7 33 33 H 1.08997 * 109.47454 * 179.97438 * 10 8 7 34 34 H 1.09003 * 109.46891 * 59.99825 * 10 8 7 35 35 H 1.08999 * 109.46847 * 64.99970 * 11 8 7 36 36 H 1.08997 * 109.47652 * 184.99888 * 11 8 7 37 37 H 0.96999 * 120.00083 * 359.97438 * 12 11 8 38 38 H 1.08999 * 109.47260 * 300.00160 * 15 13 12 39 39 H 1.09007 * 109.47306 * 59.99962 * 15 13 12 40 40 H 0.96997 * 120.00038 * 180.02562 * 20 19 17 41 41 H 1.08999 * 113.61096 * 203.67245 * 25 4 3 42 42 H 1.08991 * 113.61605 * 334.57716 * 25 4 3 43 43 H 1.08997 * 113.61674 * 270.88611 * 26 25 4 44 44 H 1.09002 * 113.61498 * 139.97993 * 26 25 4 45 45 H 1.09002 * 113.62092 * 25.35028 * 27 4 3 46 46 H 1.09000 * 113.61389 * 156.25132 * 27 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1556 0.9602 1.0772 5 6 2.7712 2.3933 0.8136 6 8 1.9991 2.9607 1.5571 7 7 3.2856 3.0446 -0.2484 8 6 2.8299 4.3997 -0.5677 9 1 2.6192 4.9392 0.3557 10 6 1.5585 4.3238 -1.4154 11 6 3.9210 5.1338 -1.3495 12 7 5.1723 5.1024 -0.5882 13 6 6.2785 5.6904 -1.0854 14 8 6.2381 6.2451 -2.1632 15 6 7.5655 5.6587 -0.3020 16 16 8.8565 6.5269 -1.2269 17 6 10.2091 6.3400 -0.1135 18 1 10.0730 5.8091 0.8172 19 6 11.4499 6.8739 -0.4328 20 7 11.6159 7.5204 -1.5673 21 14 12.8841 6.6750 0.7474 22 1 13.1578 5.2302 0.9547 23 1 14.0888 7.3297 0.1772 24 1 12.5459 7.3062 2.0482 25 6 2.8537 0.4953 2.5117 26 6 4.1965 -0.2529 2.4678 27 6 4.6444 0.7736 1.4140 28 1 -1.0501 0.0000 -0.0003 29 1 3.0092 0.3237 -0.9757 30 1 3.0098 -1.0056 0.2081 31 1 3.9574 2.6159 -0.8014 32 1 1.7691 3.7843 -2.3388 33 1 1.2192 5.3321 -1.6526 34 1 0.7811 3.8009 -0.8584 35 1 4.0693 4.6451 -2.3125 36 1 3.6192 6.1688 -1.5101 37 1 5.2047 4.6585 0.2736 38 1 7.4172 6.1480 0.6606 39 1 7.8673 4.6237 -0.1407 40 1 12.4831 7.8932 -1.7907 41 1 2.8301 1.3077 3.2381 42 1 1.9887 -0.1639 2.5841 43 1 4.1177 -1.2691 2.0815 44 1 4.7589 -0.1957 3.3998 45 1 5.2251 0.3391 0.6003 46 1 5.1103 1.6621 1.8403 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201920.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:27 Heat of formation + Delta-G solvation = -36.850255 kcal Electronic energy + Delta-G solvation = -26561.477234 eV Core-core repulsion = 22771.148284 eV Total energy + Delta-G solvation = -3790.328951 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.82165 -40.65209 -39.13809 -37.33335 -34.86453 -34.57019 -34.53399 -32.42571 -30.83752 -29.93825 -27.72707 -26.90058 -26.58136 -26.15600 -22.91872 -21.76981 -21.67905 -20.09711 -19.83188 -19.22475 -18.02949 -17.72268 -17.61275 -17.08687 -16.86227 -16.47229 -16.42779 -15.99754 -15.83529 -15.28489 -15.05745 -14.83172 -14.56533 -14.31716 -14.22288 -14.04651 -13.89023 -13.55189 -13.31474 -13.24541 -13.15487 -12.98777 -12.85460 -12.67215 -12.61016 -12.25238 -12.09124 -11.80340 -11.73158 -11.37263 -11.11625 -11.08613 -11.00968 -10.98680 -10.57010 -10.26441 -10.20567 -10.13597 -8.64768 -8.33267 -6.10895 1.27706 1.44740 1.47635 1.56391 1.57613 1.60973 1.86085 1.92632 2.07528 2.27530 2.31713 3.00880 3.26429 3.33146 3.44112 3.55033 3.76350 3.78421 3.89924 3.95907 3.99691 4.04814 4.23527 4.31076 4.52589 4.54158 4.56350 4.63946 4.68417 4.73463 4.74446 4.83522 4.88889 4.97017 5.04983 5.11314 5.14479 5.18669 5.23429 5.36595 5.43156 5.44766 5.49641 6.20977 6.43324 6.50624 6.71201 7.08204 7.20621 7.22122 8.75517 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014469 B = 0.002421 C = 0.002155 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1934.737171 B =11561.400383 C =12989.714831 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.210 4.210 3 C 0.017 3.983 4 C -0.100 4.100 5 C 0.532 3.468 6 O -0.577 6.577 7 N -0.715 5.715 8 C 0.141 3.859 9 H 0.082 0.918 10 C -0.154 4.154 11 C 0.117 3.883 12 N -0.713 5.713 13 C 0.537 3.463 14 O -0.561 6.561 15 C -0.131 4.131 16 S -0.148 6.148 17 C -0.546 4.546 18 H 0.082 0.918 19 C 0.014 3.986 20 N -0.911 5.911 21 Si 0.996 3.004 22 H -0.261 1.261 23 H -0.280 1.280 24 H -0.264 1.264 25 C -0.119 4.119 26 C -0.132 4.132 27 C -0.120 4.120 28 H 0.233 0.767 29 H 0.108 0.892 30 H 0.122 0.878 31 H 0.413 0.587 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.050 0.950 35 H 0.079 0.921 36 H 0.078 0.922 37 H 0.412 0.588 38 H 0.105 0.895 39 H 0.113 0.887 40 H 0.271 0.729 41 H 0.070 0.930 42 H 0.066 0.934 43 H 0.102 0.898 44 H 0.076 0.924 45 H 0.103 0.897 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.390 -19.255 5.771 28.632 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.231 4.231 2 C -0.210 4.210 3 C -0.020 4.020 4 C -0.104 4.104 5 C 0.320 3.680 6 O -0.456 6.456 7 N -0.368 5.368 8 C 0.036 3.964 9 H 0.100 0.900 10 C -0.212 4.212 11 C -0.007 4.007 12 N -0.367 5.367 13 C 0.323 3.677 14 O -0.439 6.439 15 C -0.282 4.282 16 S 0.079 5.921 17 C -0.694 4.694 18 H 0.101 0.899 19 C -0.191 4.191 20 N -0.547 5.547 21 Si 0.818 3.182 22 H -0.185 1.185 23 H -0.205 1.205 24 H -0.189 1.189 25 C -0.157 4.157 26 C -0.169 4.169 27 C -0.158 4.158 28 H 0.250 0.750 29 H 0.127 0.873 30 H 0.139 0.861 31 H 0.250 0.750 32 H 0.091 0.909 33 H 0.099 0.901 34 H 0.069 0.931 35 H 0.098 0.902 36 H 0.096 0.904 37 H 0.248 0.752 38 H 0.123 0.877 39 H 0.131 0.869 40 H 0.080 0.920 41 H 0.089 0.911 42 H 0.085 0.915 43 H 0.121 0.879 44 H 0.095 0.905 45 H 0.122 0.878 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -20.925 -17.828 4.378 27.836 hybrid contribution 0.750 -0.523 1.791 2.011 sum -20.174 -18.351 6.168 27.961 Atomic orbital electron populations 1.25581 0.97020 1.00253 1.00244 1.23443 0.95378 1.01145 1.01017 1.18608 0.84112 1.00684 0.98559 1.22170 1.00010 0.90433 0.97742 1.20776 0.79112 0.88718 0.79392 1.90680 1.37016 1.69486 1.48400 1.46038 1.44115 1.16378 1.30249 1.21073 0.93567 0.82902 0.98898 0.89986 1.22038 0.95757 1.03548 0.99902 1.21698 0.82157 1.01569 0.95234 1.45714 1.09012 1.57836 1.24144 1.20000 0.84902 0.77415 0.85408 1.90704 1.85298 1.44625 1.23268 1.23373 0.95717 1.06058 1.03042 1.85556 1.03814 1.72642 1.30081 1.23165 0.96755 1.42078 1.07399 0.89941 1.26107 1.01516 0.93882 0.97625 1.70172 1.25380 1.35116 1.24054 0.85030 0.76168 0.79128 0.77851 1.18502 1.20503 1.18852 1.22828 0.99080 0.99867 0.93901 1.22865 0.95241 0.98923 0.99897 1.23016 0.91801 1.00473 1.00480 0.75030 0.87348 0.86052 0.75003 0.90893 0.90146 0.93132 0.90244 0.90357 0.75190 0.87717 0.86878 0.92021 0.91127 0.91509 0.87938 0.90526 0.87835 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.21 -3.42 19.25 74.32 1.43 -1.99 16 2 C -0.21 -3.38 12.25 31.12 0.38 -3.00 16 3 C 0.02 0.17 5.09 28.79 0.15 0.32 16 4 C -0.10 -1.31 0.78 -52.40 -0.04 -1.35 16 5 C 0.53 9.89 6.22 87.65 0.55 10.43 16 6 O -0.58 -15.83 15.81 -3.03 -0.05 -15.88 16 7 N -0.72 -10.27 4.51 -442.56 -2.00 -12.27 16 8 C 0.14 2.30 2.77 44.99 0.12 2.42 16 9 H 0.08 1.64 7.51 -2.39 -0.02 1.62 16 10 C -0.15 -2.27 9.48 71.98 0.68 -1.58 16 11 C 0.12 2.25 5.23 86.38 0.45 2.70 16 12 N -0.71 -16.22 5.39 -463.06 -2.50 -18.72 16 13 C 0.54 18.42 7.85 87.66 0.69 19.11 16 14 O -0.56 -24.46 15.86 -3.02 -0.05 -24.51 16 15 C -0.13 -4.92 6.16 71.24 0.44 -4.49 16 16 S -0.15 -8.00 20.57 -56.49 -1.16 -9.16 16 17 C -0.55 -30.55 9.50 67.95 0.65 -29.90 16 18 H 0.08 4.26 7.80 -2.91 -0.02 4.24 16 19 C 0.01 0.76 5.49 84.86 0.47 1.23 16 20 N -0.91 -55.25 13.22 21.65 0.29 -54.96 16 21 Si 1.00 42.87 29.55 68.60 2.03 44.90 16 22 H -0.26 -10.55 7.11 99.48 0.71 -9.85 16 23 H -0.28 -11.79 7.11 99.48 0.71 -11.08 16 24 H -0.26 -10.83 7.11 99.48 0.71 -10.12 16 25 C -0.12 -1.77 6.73 31.12 0.21 -1.56 16 26 C -0.13 -1.22 7.73 31.12 0.24 -0.98 16 27 C -0.12 -1.12 7.22 31.12 0.22 -0.89 16 28 H 0.23 2.35 7.80 -4.41 -0.03 2.31 16 29 H 0.11 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.12 0.73 7.31 -2.38 -0.02 0.72 16 31 H 0.41 4.30 8.61 -92.71 -0.80 3.50 16 32 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 33 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.65 8.14 -2.39 -0.02 1.63 16 37 H 0.41 7.49 8.14 -92.71 -0.75 6.73 16 38 H 0.10 3.64 8.14 -2.40 -0.02 3.62 16 39 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 40 H 0.27 15.30 8.31 -92.71 -0.77 14.53 16 41 H 0.07 1.35 7.73 -2.39 -0.02 1.33 16 42 H 0.07 1.05 7.67 -2.39 -0.02 1.03 16 43 H 0.10 0.60 7.60 -2.39 -0.02 0.58 16 44 H 0.08 0.71 8.14 -2.39 -0.02 0.69 16 45 H 0.10 0.55 8.10 -2.39 -0.02 0.53 16 46 H 0.08 0.93 8.09 -2.39 -0.02 0.91 16 Total: -1.00 -81.04 405.96 2.63 -78.41 By element: Atomic # 1 Polarization: 22.28 SS G_CDS: -0.56 Total: 21.71 kcal Atomic # 6 Polarization: -16.15 SS G_CDS: 6.64 Total: -9.52 kcal Atomic # 7 Polarization: -81.74 SS G_CDS: -4.21 Total: -85.95 kcal Atomic # 8 Polarization: -40.29 SS G_CDS: -0.10 Total: -40.39 kcal Atomic # 14 Polarization: 42.87 SS G_CDS: 2.03 Total: 44.90 kcal Atomic # 16 Polarization: -8.00 SS G_CDS: -1.16 Total: -9.16 kcal Total: -81.04 2.63 -78.41 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201920.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.560 kcal (2) G-P(sol) polarization free energy of solvation -81.044 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.634 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.410 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.850 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds