Wall clock time and date at job start Tue Mar 31 2020 21:01:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46931 * 36.84575 * 3 2 1 5 5 C 1.50699 * 112.85196 * 52.60950 * 4 3 2 6 6 O 1.21282 * 119.99650 * 247.05457 * 5 4 3 7 7 N 1.34775 * 119.99957 * 67.04973 * 5 4 3 8 8 C 1.46503 * 119.99744 * 185.36008 * 7 5 4 9 9 H 1.09003 * 109.47269 * 325.00534 * 8 7 5 10 10 C 1.52995 * 109.46835 * 85.00297 * 8 7 5 11 11 C 1.52995 * 109.47123 * 205.00083 * 8 7 5 12 12 N 1.46500 * 109.47034 * 55.00373 * 11 8 7 13 13 C 1.34775 * 120.00242 * 180.02562 * 12 11 8 14 14 O 1.21288 * 119.99921 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00588 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47512 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99925 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00234 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00372 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99692 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46862 * 89.99757 * 21 19 17 23 23 H 1.48497 * 109.47127 * 209.99537 * 21 19 17 24 24 H 1.48501 * 109.47338 * 330.00168 * 21 19 17 25 25 C 1.53785 * 113.61586 * 281.29692 * 4 3 2 26 26 C 1.53780 * 87.08204 * 220.02329 * 25 4 3 27 27 C 1.53777 * 87.08288 * 25.43244 * 26 25 4 28 28 H 4.44640 * 5.63259 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.47358 * 276.84965 * 3 2 1 30 30 H 1.08994 * 109.47213 * 156.84308 * 3 2 1 31 31 H 0.97000 * 120.00137 * 5.36723 * 7 5 4 32 32 H 1.09007 * 109.46976 * 180.02562 * 10 8 7 33 33 H 1.09007 * 109.47157 * 299.99622 * 10 8 7 34 34 H 1.08997 * 109.47327 * 59.99782 * 10 8 7 35 35 H 1.09003 * 109.47106 * 174.99623 * 11 8 7 36 36 H 1.08992 * 109.47445 * 295.00297 * 11 8 7 37 37 H 0.97003 * 120.00161 * 359.97438 * 12 11 8 38 38 H 1.09004 * 109.46640 * 300.00336 * 15 13 12 39 39 H 1.09004 * 109.46908 * 59.99136 * 15 13 12 40 40 H 0.97002 * 119.99732 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.61269 * 334.57191 * 25 4 3 42 42 H 1.09000 * 113.61057 * 105.47071 * 25 4 3 43 43 H 1.09002 * 113.61657 * 270.88359 * 26 25 4 44 44 H 1.09000 * 113.61672 * 139.98524 * 26 25 4 45 45 H 1.08995 * 113.61672 * 220.01772 * 27 26 25 46 46 H 1.09000 * 113.68926 * 89.12842 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1535 -0.8650 5 6 2.5565 -1.1586 -2.2474 6 8 1.8077 -2.0528 -2.5801 7 7 2.8519 -0.1695 -3.1139 8 6 2.1794 -0.1096 -4.4141 9 1 2.0018 -1.1215 -4.7783 10 6 0.8431 0.6202 -4.2639 11 6 3.0625 0.6436 -5.4108 12 7 4.3841 0.0138 -5.4653 13 6 5.3346 0.5112 -6.2811 14 8 5.0957 1.4800 -6.9706 15 6 6.6943 -0.1363 -6.3368 16 16 7.7391 0.7546 -7.5161 17 6 9.2223 -0.1871 -7.3830 18 1 9.2674 -1.0316 -6.7113 19 6 10.3325 0.1557 -8.1422 20 7 11.4404 -0.5481 -8.0432 21 14 10.2544 1.6160 -9.3046 22 1 10.6764 2.8445 -8.5851 23 1 11.1615 1.3808 -10.4566 24 1 8.8631 1.7836 -9.7961 25 6 3.1022 -2.5206 -0.1628 26 6 4.4644 -2.8194 -0.8106 27 6 4.6875 -1.2986 -0.8575 28 1 -1.0498 -0.0001 -0.0003 29 1 3.0094 -0.1217 1.0203 30 1 3.0089 0.9456 -0.4041 31 1 3.5098 0.5027 -2.8767 32 1 0.3425 0.6643 -5.2312 33 1 0.2138 0.0835 -3.5537 34 1 1.0206 1.6320 -3.8996 35 1 2.6039 0.6115 -6.3992 36 1 3.1671 1.6806 -5.0923 37 1 4.5754 -0.7608 -4.9136 38 1 7.1526 -0.1043 -5.3483 39 1 6.5901 -1.1735 -6.6554 40 1 12.2162 -0.3087 -8.5741 41 1 3.1408 -2.4547 0.9246 42 1 2.2980 -3.1635 -0.5205 43 1 4.3879 -3.2801 -1.7956 44 1 5.1566 -3.3421 -0.1505 45 1 5.1631 -0.9552 -1.7761 46 1 5.1597 -0.8974 0.0392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001284201921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:31 Heat of formation + Delta-G solvation = -11.171811 kcal Electronic energy + Delta-G solvation = -26731.923117 eV Core-core repulsion = 22942.707667 eV Total energy + Delta-G solvation = -3789.215450 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -41.22039 -39.47193 -38.18912 -36.38669 -34.21791 -33.75108 -32.46130 -31.57438 -29.75257 -29.48125 -26.16567 -26.00402 -25.57731 -24.92668 -22.53363 -21.16639 -20.50334 -19.59833 -18.63074 -17.92959 -16.92191 -16.80661 -16.43176 -16.08139 -15.92594 -15.35113 -15.03587 -14.94767 -14.66407 -14.44433 -14.07611 -13.96181 -13.67230 -13.48919 -13.18430 -13.01917 -12.89791 -12.81993 -12.71205 -12.29341 -12.10984 -11.95004 -11.44304 -11.39508 -11.28969 -11.25634 -11.03005 -10.77299 -10.63590 -10.50032 -10.27645 -10.00004 -9.88576 -9.62366 -9.43651 -9.09943 -9.01518 -8.53283 -6.94775 -6.31071 -4.03144 2.28180 2.49160 2.55043 2.66285 2.77562 2.91186 3.27271 3.31676 3.48484 3.61759 3.82801 4.03456 4.24907 4.28829 4.30906 4.38083 4.44958 4.59697 4.69252 4.79209 4.92852 5.00094 5.07976 5.16173 5.21355 5.24928 5.27800 5.29139 5.33534 5.38231 5.55113 5.58287 5.62579 5.67078 5.72186 5.73826 5.79017 5.85352 5.97060 5.99457 6.14026 6.41432 7.14782 7.31678 7.50962 7.90638 7.91930 8.39406 8.41004 9.15022 10.78118 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.002462 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.496925 B =11368.104684 C =12489.043406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.191 4.191 3 C 0.010 3.990 4 C -0.106 4.106 5 C 0.546 3.454 6 O -0.530 6.530 7 N -0.725 5.725 8 C 0.131 3.869 9 H 0.097 0.903 10 C -0.159 4.159 11 C 0.114 3.886 12 N -0.737 5.737 13 C 0.531 3.469 14 O -0.518 6.518 15 C -0.124 4.124 16 S -0.141 6.141 17 C -0.522 4.522 18 H 0.088 0.912 19 C 0.095 3.905 20 N -0.880 5.880 21 Si 0.857 3.143 22 H -0.267 1.267 23 H -0.274 1.274 24 H -0.235 1.235 25 C -0.116 4.116 26 C -0.142 4.142 27 C -0.126 4.126 28 H 0.215 0.785 29 H 0.098 0.902 30 H 0.091 0.909 31 H 0.403 0.597 32 H 0.070 0.930 33 H 0.064 0.936 34 H 0.061 0.939 35 H 0.083 0.917 36 H 0.073 0.927 37 H 0.400 0.600 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.271 0.729 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.083 0.917 44 H 0.075 0.925 45 H 0.076 0.924 46 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.624 -0.277 18.479 27.693 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.191 4.191 3 C -0.027 4.027 4 C -0.109 4.109 5 C 0.332 3.668 6 O -0.405 6.405 7 N -0.377 5.377 8 C 0.027 3.973 9 H 0.115 0.885 10 C -0.218 4.218 11 C -0.011 4.011 12 N -0.392 5.392 13 C 0.317 3.683 14 O -0.392 6.392 15 C -0.275 4.275 16 S 0.085 5.915 17 C -0.669 4.669 18 H 0.106 0.894 19 C -0.113 4.113 20 N -0.516 5.516 21 Si 0.681 3.319 22 H -0.192 1.192 23 H -0.199 1.199 24 H -0.159 1.159 25 C -0.154 4.154 26 C -0.180 4.180 27 C -0.163 4.163 28 H 0.232 0.768 29 H 0.116 0.884 30 H 0.109 0.891 31 H 0.237 0.763 32 H 0.089 0.911 33 H 0.083 0.917 34 H 0.080 0.920 35 H 0.101 0.899 36 H 0.091 0.909 37 H 0.234 0.766 38 H 0.115 0.885 39 H 0.115 0.885 40 H 0.081 0.919 41 H 0.107 0.893 42 H 0.101 0.899 43 H 0.101 0.899 44 H 0.094 0.906 45 H 0.095 0.905 46 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -21.392 0.671 17.003 27.335 hybrid contribution 0.693 -0.576 0.685 1.132 sum -20.699 0.095 17.688 27.227 Atomic orbital electron populations 1.24857 0.95940 1.00315 1.00288 1.22851 0.94337 1.00904 1.01033 1.18625 0.85318 0.97999 1.00721 1.22054 0.97702 0.97896 0.93277 1.19790 0.80555 0.81014 0.85447 1.90695 1.36384 1.35849 1.77620 1.46041 1.44416 1.30209 1.17064 1.21240 0.92231 1.01431 0.82438 0.88542 1.22096 0.96132 1.00669 1.02929 1.21618 0.82938 0.97048 0.99476 1.45954 1.12593 1.34642 1.46045 1.20301 0.85606 0.83711 0.78703 1.90711 1.80889 1.26167 1.41452 1.23276 0.94875 1.03937 1.05393 1.84790 1.10390 1.43268 1.53004 1.22308 0.96137 1.17859 1.30619 0.89383 1.24716 0.94152 0.96498 0.95958 1.69937 1.02386 1.39116 1.40192 0.86736 0.80938 0.82873 0.81304 1.19213 1.19934 1.15924 1.22878 0.98743 0.94213 0.99534 1.22854 0.97314 0.95940 1.01873 1.23041 0.92181 0.97464 1.03635 0.76840 0.88366 0.89065 0.76255 0.91072 0.91708 0.92020 0.89924 0.90866 0.76584 0.88531 0.88477 0.91922 0.89302 0.89922 0.89858 0.90649 0.90541 0.88549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.65 19.25 29.55 0.57 -1.08 16 2 C -0.19 -1.65 12.45 -37.12 -0.46 -2.11 16 3 C 0.01 0.06 5.20 -29.52 -0.15 -0.09 16 4 C -0.11 -0.77 0.82 -154.84 -0.13 -0.89 16 5 C 0.55 5.22 5.57 -10.99 -0.06 5.16 16 6 O -0.53 -7.04 15.60 5.56 0.09 -6.96 16 7 N -0.72 -5.65 4.51 -53.81 -0.24 -5.89 16 8 C 0.13 1.10 2.78 -67.93 -0.19 0.92 16 9 H 0.10 0.96 7.51 -51.93 -0.39 0.57 16 10 C -0.16 -1.22 9.48 37.16 0.35 -0.87 16 11 C 0.11 1.11 5.23 -4.04 -0.02 1.09 16 12 N -0.74 -8.58 5.39 -60.30 -0.32 -8.90 16 13 C 0.53 8.88 7.85 -10.98 -0.09 8.80 16 14 O -0.52 -10.65 15.86 5.55 0.09 -10.56 16 15 C -0.12 -2.31 6.16 36.01 0.22 -2.09 16 16 S -0.14 -3.50 18.55 -107.50 -1.99 -5.49 16 17 C -0.52 -14.81 10.04 30.94 0.31 -14.50 16 18 H 0.09 2.61 8.03 -52.49 -0.42 2.18 16 19 C 0.10 2.76 5.50 -17.43 -0.10 2.67 16 20 N -0.88 -26.30 13.97 55.49 0.78 -25.53 16 21 Si 0.86 21.55 27.74 -169.99 -4.72 16.83 16 22 H -0.27 -6.63 7.11 56.52 0.40 -6.22 16 23 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 24 H -0.24 -5.91 6.74 56.52 0.38 -5.53 16 25 C -0.12 -0.88 7.03 -25.92 -0.18 -1.06 16 26 C -0.14 -1.02 7.80 -25.92 -0.20 -1.22 16 27 C -0.13 -0.75 7.22 -25.92 -0.19 -0.94 16 28 H 0.21 1.19 7.80 -54.10 -0.42 0.76 16 29 H 0.10 0.45 8.02 -51.93 -0.42 0.03 16 30 H 0.09 0.45 8.14 -51.93 -0.42 0.02 16 31 H 0.40 2.55 8.61 -40.82 -0.35 2.20 16 32 H 0.07 0.48 8.14 -51.93 -0.42 0.06 16 33 H 0.06 0.59 8.14 -51.93 -0.42 0.16 16 34 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 35 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 36 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 37 H 0.40 3.92 8.14 -40.82 -0.33 3.59 16 38 H 0.10 1.64 8.14 -51.91 -0.42 1.22 16 39 H 0.10 1.71 8.14 -51.91 -0.42 1.29 16 40 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 41 H 0.09 0.53 8.02 -51.93 -0.42 0.11 16 42 H 0.08 0.81 7.35 -51.93 -0.38 0.43 16 43 H 0.08 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 45 H 0.08 0.47 8.09 -51.93 -0.42 0.05 16 46 H 0.10 0.42 8.10 -51.93 -0.42 0.00 16 LS Contribution 404.35 15.07 6.09 6.09 Total: -1.00 -35.77 404.35 -7.90 -43.68 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.36 Total: 2.96 kcal Atomic # 6 Polarization: -5.91 SS G_CDS: -0.31 Total: -6.23 kcal Atomic # 7 Polarization: -40.53 SS G_CDS: 0.21 Total: -40.33 kcal Atomic # 8 Polarization: -17.69 SS G_CDS: 0.17 Total: -17.51 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -4.72 Total: 16.83 kcal Atomic # 16 Polarization: -3.50 SS G_CDS: -1.99 Total: -5.49 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.77 -7.90 -43.68 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.505 kcal (2) G-P(sol) polarization free energy of solvation -35.775 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.270 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.677 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.172 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds