Wall clock time and date at job start Tue Mar 31 2020 21:01:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17402 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 C 1.53004 * 109.46931 * 36.84575 * 3 2 1 5 5 C 1.50699 * 112.85196 * 52.60950 * 4 3 2 6 6 O 1.21282 * 119.99650 * 247.05457 * 5 4 3 7 7 N 1.34775 * 119.99957 * 67.04973 * 5 4 3 8 8 C 1.46503 * 119.99744 * 185.36008 * 7 5 4 9 9 H 1.09003 * 109.47269 * 325.00534 * 8 7 5 10 10 C 1.52995 * 109.46835 * 85.00297 * 8 7 5 11 11 C 1.52995 * 109.47123 * 205.00083 * 8 7 5 12 12 N 1.46500 * 109.47034 * 55.00373 * 11 8 7 13 13 C 1.34775 * 120.00242 * 180.02562 * 12 11 8 14 14 O 1.21288 * 119.99921 * 359.97438 * 13 12 11 15 15 C 1.50704 * 120.00588 * 179.97438 * 13 12 11 16 16 S 1.80998 * 109.47512 * 179.97438 * 15 13 12 17 17 C 1.76194 * 99.99925 * 179.97438 * 16 15 13 18 18 H 1.08001 * 120.00182 * 0.02562 * 17 16 15 19 19 C 1.38799 * 120.00234 * 179.97438 * 17 16 15 20 20 N 1.31626 * 120.00372 * 180.02562 * 19 17 16 21 21 Si 1.86807 * 119.99692 * 0.02562 * 19 17 16 22 22 H 1.48502 * 109.46862 * 89.99757 * 21 19 17 23 23 H 1.48497 * 109.47127 * 209.99537 * 21 19 17 24 24 H 1.48501 * 109.47338 * 330.00168 * 21 19 17 25 25 C 1.53785 * 113.61586 * 281.29692 * 4 3 2 26 26 C 1.53780 * 87.08204 * 220.02329 * 25 4 3 27 27 C 1.53777 * 87.08288 * 25.43244 * 26 25 4 28 28 H 4.44640 * 5.63259 * 180.02562 * 4 1 2 29 29 H 1.08995 * 109.47358 * 276.84965 * 3 2 1 30 30 H 1.08994 * 109.47213 * 156.84308 * 3 2 1 31 31 H 0.97000 * 120.00137 * 5.36723 * 7 5 4 32 32 H 1.09007 * 109.46976 * 180.02562 * 10 8 7 33 33 H 1.09007 * 109.47157 * 299.99622 * 10 8 7 34 34 H 1.08997 * 109.47327 * 59.99782 * 10 8 7 35 35 H 1.09003 * 109.47106 * 174.99623 * 11 8 7 36 36 H 1.08992 * 109.47445 * 295.00297 * 11 8 7 37 37 H 0.97003 * 120.00161 * 359.97438 * 12 11 8 38 38 H 1.09004 * 109.46640 * 300.00336 * 15 13 12 39 39 H 1.09004 * 109.46908 * 59.99136 * 15 13 12 40 40 H 0.97002 * 119.99732 * 179.97438 * 20 19 17 41 41 H 1.09001 * 113.61269 * 334.57191 * 25 4 3 42 42 H 1.09000 * 113.61057 * 105.47071 * 25 4 3 43 43 H 1.09002 * 113.61657 * 270.88359 * 26 25 4 44 44 H 1.09000 * 113.61672 * 139.98524 * 26 25 4 45 45 H 1.08995 * 113.61672 * 220.01772 * 27 26 25 46 46 H 1.09000 * 113.68926 * 89.12842 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1565 -1.1535 -0.8650 5 6 2.5565 -1.1586 -2.2474 6 8 1.8077 -2.0528 -2.5801 7 7 2.8519 -0.1695 -3.1139 8 6 2.1794 -0.1096 -4.4141 9 1 2.0018 -1.1215 -4.7783 10 6 0.8431 0.6202 -4.2639 11 6 3.0625 0.6436 -5.4108 12 7 4.3841 0.0138 -5.4653 13 6 5.3346 0.5112 -6.2811 14 8 5.0957 1.4800 -6.9706 15 6 6.6943 -0.1363 -6.3368 16 16 7.7391 0.7546 -7.5161 17 6 9.2223 -0.1871 -7.3830 18 1 9.2674 -1.0316 -6.7113 19 6 10.3325 0.1557 -8.1422 20 7 11.4404 -0.5481 -8.0432 21 14 10.2544 1.6160 -9.3046 22 1 10.6764 2.8445 -8.5851 23 1 11.1615 1.3808 -10.4566 24 1 8.8631 1.7836 -9.7961 25 6 3.1022 -2.5206 -0.1628 26 6 4.4644 -2.8194 -0.8106 27 6 4.6875 -1.2986 -0.8575 28 1 -1.0498 -0.0001 -0.0003 29 1 3.0094 -0.1217 1.0203 30 1 3.0089 0.9456 -0.4041 31 1 3.5098 0.5027 -2.8767 32 1 0.3425 0.6643 -5.2312 33 1 0.2138 0.0835 -3.5537 34 1 1.0206 1.6320 -3.8996 35 1 2.6039 0.6115 -6.3992 36 1 3.1671 1.6806 -5.0923 37 1 4.5754 -0.7608 -4.9136 38 1 7.1526 -0.1043 -5.3483 39 1 6.5901 -1.1735 -6.6554 40 1 12.2162 -0.3087 -8.5741 41 1 3.1408 -2.4547 0.9246 42 1 2.2980 -3.1635 -0.5205 43 1 4.3879 -3.2801 -1.7956 44 1 5.1566 -3.3421 -0.1505 45 1 5.1631 -0.9552 -1.7761 46 1 5.1597 -0.8974 0.0392 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001284201921.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:30 Heat of formation + Delta-G solvation = -35.705006 kcal Electronic energy + Delta-G solvation = -26732.986956 eV Core-core repulsion = 22942.707667 eV Total energy + Delta-G solvation = -3790.279289 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.90234 -40.69225 -38.95070 -37.30428 -34.94050 -34.67984 -34.63850 -32.42341 -30.91095 -30.19402 -27.88574 -26.94817 -26.55447 -25.57235 -23.19785 -21.92794 -21.77152 -20.32219 -19.82446 -19.17895 -17.96034 -17.67995 -17.54328 -17.13575 -16.93704 -16.60464 -16.50906 -15.85146 -15.72897 -15.21467 -15.04499 -14.97641 -14.80518 -14.66815 -14.34078 -14.10787 -13.88282 -13.62256 -13.34807 -13.31419 -13.29224 -12.99341 -12.98436 -12.65249 -12.62391 -12.11373 -12.02981 -11.87725 -11.85654 -11.34559 -11.15951 -11.08981 -11.04453 -10.83726 -10.72906 -10.52520 -10.22912 -10.16432 -8.98091 -8.50395 -6.20958 0.99707 1.32398 1.47603 1.54981 1.55488 1.57289 1.87777 1.93793 2.02223 2.23319 2.27245 2.72489 2.87971 3.30050 3.46276 3.53844 3.69622 3.81227 3.85011 3.91418 4.01487 4.05334 4.21943 4.24410 4.47900 4.49164 4.55123 4.67753 4.71657 4.72243 4.79796 4.81942 4.88887 4.95852 5.07239 5.08670 5.14450 5.18109 5.24827 5.34105 5.44337 5.45622 5.71814 6.12883 6.38143 6.48284 6.72518 6.94858 7.14399 7.20178 8.61925 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016472 B = 0.002462 C = 0.002241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1699.496925 B =11368.104684 C =12489.043406 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.209 4.209 3 C 0.009 3.991 4 C -0.103 4.103 5 C 0.544 3.456 6 O -0.573 6.573 7 N -0.715 5.715 8 C 0.141 3.859 9 H 0.082 0.918 10 C -0.154 4.154 11 C 0.118 3.882 12 N -0.713 5.713 13 C 0.538 3.462 14 O -0.558 6.558 15 C -0.113 4.113 16 S -0.172 6.172 17 C -0.528 4.528 18 H 0.062 0.938 19 C 0.045 3.955 20 N -0.917 5.917 21 Si 0.914 3.086 22 H -0.261 1.261 23 H -0.261 1.261 24 H -0.236 1.236 25 C -0.118 4.118 26 C -0.147 4.147 27 C -0.114 4.114 28 H 0.231 0.769 29 H 0.121 0.879 30 H 0.109 0.891 31 H 0.413 0.587 32 H 0.081 0.919 33 H 0.049 0.951 34 H 0.072 0.928 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.412 0.588 38 H 0.116 0.884 39 H 0.109 0.891 40 H 0.277 0.723 41 H 0.108 0.892 42 H 0.052 0.948 43 H 0.061 0.939 44 H 0.086 0.914 45 H 0.077 0.923 46 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.151 1.077 19.590 28.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.209 4.209 3 C -0.027 4.027 4 C -0.107 4.107 5 C 0.331 3.669 6 O -0.452 6.452 7 N -0.368 5.368 8 C 0.036 3.964 9 H 0.100 0.900 10 C -0.212 4.212 11 C -0.006 4.006 12 N -0.367 5.367 13 C 0.324 3.676 14 O -0.436 6.436 15 C -0.264 4.264 16 S 0.054 5.946 17 C -0.676 4.676 18 H 0.080 0.920 19 C -0.161 4.161 20 N -0.555 5.555 21 Si 0.736 3.264 22 H -0.186 1.186 23 H -0.186 1.186 24 H -0.160 1.160 25 C -0.156 4.156 26 C -0.185 4.185 27 C -0.151 4.151 28 H 0.247 0.753 29 H 0.139 0.861 30 H 0.127 0.873 31 H 0.250 0.750 32 H 0.100 0.900 33 H 0.068 0.932 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.100 0.900 37 H 0.248 0.752 38 H 0.134 0.866 39 H 0.127 0.873 40 H 0.086 0.914 41 H 0.127 0.873 42 H 0.071 0.929 43 H 0.080 0.920 44 H 0.105 0.895 45 H 0.096 0.904 46 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.925 2.016 18.149 28.534 hybrid contribution 0.728 -1.113 0.453 1.405 sum -21.197 0.903 18.602 28.217 Atomic orbital electron populations 1.25531 0.97006 1.00449 1.00482 1.23548 0.95476 1.00871 1.00984 1.18820 0.83937 0.98161 1.01816 1.22009 0.98651 0.98160 0.91832 1.20245 0.79870 0.80407 0.86371 1.90681 1.38413 1.37551 1.78549 1.45971 1.44248 1.29995 1.16551 1.21092 0.92445 1.00559 0.82338 0.89961 1.22038 0.95220 1.00776 1.03195 1.21718 0.81608 0.97403 0.99867 1.45710 1.12332 1.34295 1.44319 1.19884 0.85492 0.83165 0.79060 1.90706 1.81420 1.27981 1.43456 1.23273 0.95036 1.03667 1.04393 1.84691 1.09905 1.44090 1.55884 1.22462 0.97956 1.17392 1.29775 0.91978 1.25574 0.93920 0.99046 0.97544 1.70018 1.03224 1.40818 1.41470 0.85866 0.80995 0.79785 0.79720 1.18560 1.18581 1.16010 1.22921 0.97905 0.94093 1.00679 1.22845 0.97436 0.97205 1.00969 1.23073 0.91001 0.96117 1.04935 0.75280 0.86136 0.87315 0.75021 0.90048 0.93165 0.90932 0.90046 0.90030 0.75186 0.86558 0.87321 0.91407 0.87336 0.92876 0.91973 0.89537 0.90399 0.85999 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.22 -3.50 19.25 74.32 1.43 -2.07 16 2 C -0.21 -3.32 12.45 31.12 0.39 -2.94 16 3 C 0.01 0.09 5.20 28.79 0.15 0.24 16 4 C -0.10 -1.31 0.82 -52.40 -0.04 -1.35 16 5 C 0.54 9.88 5.57 87.66 0.49 10.37 16 6 O -0.57 -15.44 15.60 -3.04 -0.05 -15.49 16 7 N -0.71 -9.86 4.51 -442.54 -2.00 -11.85 16 8 C 0.14 2.15 2.78 44.99 0.12 2.27 16 9 H 0.08 1.56 7.51 -2.39 -0.02 1.55 16 10 C -0.15 -2.11 9.48 71.98 0.68 -1.43 16 11 C 0.12 2.05 5.23 86.38 0.45 2.50 16 12 N -0.71 -14.93 5.39 -463.07 -2.49 -17.42 16 13 C 0.54 16.96 7.85 87.66 0.69 17.65 16 14 O -0.56 -22.08 15.86 -3.05 -0.05 -22.13 16 15 C -0.11 -4.01 6.16 71.24 0.44 -3.57 16 16 S -0.17 -8.42 18.55 -56.49 -1.05 -9.47 16 17 C -0.53 -30.13 10.04 67.95 0.68 -29.45 16 18 H 0.06 3.74 8.03 -2.91 -0.02 3.72 16 19 C 0.04 2.58 5.50 84.86 0.47 3.04 16 20 N -0.92 -55.25 13.97 21.65 0.30 -54.95 16 21 Si 0.91 44.27 27.74 68.60 1.90 46.17 16 22 H -0.26 -12.27 7.11 99.48 0.71 -11.56 16 23 H -0.26 -11.95 7.11 99.48 0.71 -11.24 16 24 H -0.24 -11.39 6.74 99.48 0.67 -10.72 16 25 C -0.12 -1.68 7.03 31.12 0.22 -1.46 16 26 C -0.15 -1.94 7.80 31.12 0.24 -1.69 16 27 C -0.11 -1.05 7.22 31.12 0.22 -0.83 16 28 H 0.23 2.42 7.80 -4.43 -0.03 2.39 16 29 H 0.12 0.67 8.02 -2.39 -0.02 0.65 16 30 H 0.11 0.69 8.14 -2.39 -0.02 0.67 16 31 H 0.41 4.08 8.61 -92.71 -0.80 3.28 16 32 H 0.08 0.96 8.14 -2.38 -0.02 0.94 16 33 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 34 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 37 H 0.41 7.03 8.14 -92.71 -0.75 6.27 16 38 H 0.12 3.70 8.14 -2.39 -0.02 3.68 16 39 H 0.11 3.65 8.14 -2.39 -0.02 3.63 16 40 H 0.28 15.41 8.31 -92.71 -0.77 14.64 16 41 H 0.11 1.08 8.02 -2.39 -0.02 1.06 16 42 H 0.05 1.08 7.35 -2.39 -0.02 1.06 16 43 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 44 H 0.09 0.93 8.14 -2.39 -0.02 0.91 16 45 H 0.08 0.72 8.09 -2.39 -0.02 0.70 16 46 H 0.12 0.56 8.10 -2.39 -0.02 0.54 16 Total: -1.00 -78.67 404.35 2.60 -76.07 By element: Atomic # 1 Polarization: 18.38 SS G_CDS: -0.60 Total: 17.78 kcal Atomic # 6 Polarization: -15.35 SS G_CDS: 6.63 Total: -8.72 kcal Atomic # 7 Polarization: -80.03 SS G_CDS: -4.19 Total: -84.22 kcal Atomic # 8 Polarization: -37.52 SS G_CDS: -0.10 Total: -37.62 kcal Atomic # 14 Polarization: 44.27 SS G_CDS: 1.90 Total: 46.17 kcal Atomic # 16 Polarization: -8.42 SS G_CDS: -1.05 Total: -9.47 kcal Total: -78.67 2.60 -76.07 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001284201921.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.369 kcal (2) G-P(sol) polarization free energy of solvation -78.675 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.600 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -35.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds