Wall clock time and date at job start Tue Mar 31 2020 21:01:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99944 * 2 1 4 4 C 1.38748 * 120.06078 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94751 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05353 * 359.74870 * 5 4 3 7 7 C 1.38248 * 120.11073 * 0.50456 * 6 5 4 8 8 C 1.50703 * 119.97052 * 179.76930 * 7 6 5 9 9 N 1.46899 * 109.47107 * 269.72443 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.53002 * 109.46992 * 205.00108 * 10 9 8 14 14 N 1.46498 * 109.47327 * 55.00149 * 13 10 9 15 15 C 1.34766 * 120.00168 * 179.97438 * 14 13 10 16 16 O 1.21280 * 119.99939 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00112 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47247 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00188 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99655 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99900 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00156 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99802 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47176 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46786 * 120.00019 * 23 21 19 26 26 H 1.48500 * 109.47398 * 240.00137 * 23 21 19 27 27 C 1.38160 * 120.05402 * 359.49342 * 7 6 5 28 28 H 1.09004 * 109.47026 * 300.00125 * 1 2 3 29 29 H 1.08997 * 109.47028 * 60.00257 * 1 2 3 30 30 H 1.09003 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.02625 * 359.95863 * 4 3 2 32 32 H 1.08000 * 119.97132 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.94159 * 180.27931 * 6 5 4 34 34 H 1.09002 * 109.47152 * 149.72530 * 8 7 6 35 35 H 1.09001 * 109.46980 * 29.72630 * 8 7 6 36 36 H 1.00908 * 110.99847 * 56.05051 * 9 8 7 37 37 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 38 38 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 39 39 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 40 40 H 1.08995 * 109.46473 * 175.00444 * 13 10 9 41 41 H 1.09002 * 109.47052 * 295.00087 * 13 10 9 42 42 H 0.97004 * 119.99521 * 359.97438 * 14 13 10 43 43 H 1.08995 * 109.47469 * 299.99950 * 17 15 14 44 44 H 1.09002 * 109.47277 * 60.00340 * 17 15 14 45 45 H 0.97000 * 119.99519 * 179.97438 * 22 21 19 46 46 H 1.08005 * 120.02501 * 180.23067 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6756 0.0063 7 6 4.0560 2.5169 0.0005 8 6 5.5609 2.5979 0.0010 9 7 6.0503 2.6246 -1.3838 10 6 7.5166 2.7042 -1.4225 11 1 7.8695 3.3135 -0.5905 12 6 8.1068 1.2971 -1.3105 13 6 7.9582 3.3388 -2.7428 14 7 7.2983 4.6366 -2.9057 15 6 7.5383 5.3816 -4.0027 16 8 8.3003 4.9776 -4.8554 17 6 6.8600 6.7169 -4.1700 18 16 7.3823 7.4676 -5.7320 19 6 6.4656 8.9711 -5.6705 20 1 5.8245 9.1785 -4.8265 21 6 6.5675 9.8889 -6.7068 22 7 7.3485 9.6358 -7.7357 23 14 5.5951 11.4826 -6.6419 24 1 4.7985 11.5258 -5.3894 25 1 6.5311 12.6351 -6.6727 26 1 4.6832 11.5540 -7.8117 27 6 3.4311 1.2847 0.0000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2129 2.3203 0.0003 32 1 1.3341 4.5113 0.0019 33 1 3.7923 4.6379 0.0113 34 1 5.9714 1.7286 0.5147 35 1 5.8756 3.5060 0.5152 36 1 5.6335 3.3849 -1.9000 37 1 7.7921 0.8450 -0.3698 38 1 7.7539 0.6877 -2.1425 39 1 9.1948 1.3560 -1.3397 40 1 9.0391 3.4792 -2.7348 41 1 7.6829 2.6848 -3.5703 42 1 6.6886 4.9595 -2.2239 43 1 5.7791 6.5768 -4.1782 44 1 7.1353 7.3706 -3.3424 45 1 7.4193 10.2771 -8.4600 46 1 4.0206 0.3798 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317226997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:14 Heat of formation + Delta-G solvation = -51.500928 kcal Electronic energy + Delta-G solvation = -25662.121235 eV Core-core repulsion = 21871.156984 eV Total energy + Delta-G solvation = -3790.964251 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.47968 -39.44968 -38.27913 -37.11371 -34.10176 -32.45035 -32.41438 -30.94898 -29.86275 -29.27171 -27.68057 -26.17249 -25.47758 -24.89342 -22.85433 -21.32520 -20.88176 -20.41839 -18.23845 -17.84692 -16.79068 -16.48175 -16.29175 -16.19701 -16.15000 -16.02756 -15.28692 -14.83049 -14.81153 -14.43111 -14.24828 -14.01283 -13.66103 -13.29569 -13.11220 -12.88649 -12.84962 -12.77237 -12.61727 -12.33869 -12.18172 -12.00121 -11.76496 -11.68334 -11.40143 -11.12914 -11.07639 -11.04384 -11.02395 -10.75867 -9.81376 -9.43208 -9.20287 -9.08527 -8.93405 -8.78493 -8.49461 -8.23717 -6.50424 -6.22310 -3.92761 0.97073 1.15864 2.91223 3.00421 3.07887 3.20985 3.27254 3.31468 3.37400 3.68344 3.97870 4.19585 4.40121 4.47379 4.51376 4.69651 4.74079 4.76166 4.85794 4.91575 5.01349 5.06873 5.08032 5.12926 5.13572 5.15248 5.29062 5.43175 5.49230 5.55726 5.60734 5.68043 5.72328 5.85815 5.88260 5.98320 6.03888 6.11834 6.12919 6.26588 6.41880 6.53880 6.67195 7.02980 7.06664 7.58991 7.62073 8.34799 8.58059 9.23122 10.85161 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.002252 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.528927 B =12430.654253 C =14443.372053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.318 6.318 3 C 0.124 3.876 4 C -0.208 4.208 5 C -0.079 4.079 6 C -0.150 4.150 7 C -0.045 4.045 8 C 0.097 3.903 9 N -0.680 5.680 10 C 0.074 3.926 11 H 0.052 0.948 12 C -0.138 4.138 13 C 0.118 3.882 14 N -0.742 5.742 15 C 0.533 3.467 16 O -0.514 6.514 17 C -0.154 4.154 18 S -0.059 6.059 19 C -0.535 4.535 20 H 0.073 0.927 21 C 0.073 3.927 22 N -0.867 5.867 23 Si 0.919 3.081 24 H -0.272 1.272 25 H -0.280 1.280 26 H -0.280 1.280 27 C -0.128 4.128 28 H 0.054 0.946 29 H 0.056 0.944 30 H 0.099 0.901 31 H 0.126 0.874 32 H 0.126 0.874 33 H 0.123 0.877 34 H 0.084 0.916 35 H 0.043 0.957 36 H 0.346 0.654 37 H 0.057 0.943 38 H 0.066 0.934 39 H 0.060 0.940 40 H 0.074 0.926 41 H 0.076 0.924 42 H 0.392 0.608 43 H 0.090 0.910 44 H 0.089 0.911 45 H 0.268 0.732 46 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.339 -18.088 21.387 29.858 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.232 6.232 3 C 0.079 3.921 4 C -0.227 4.227 5 C -0.097 4.097 6 C -0.169 4.169 7 C -0.046 4.046 8 C -0.031 4.031 9 N -0.315 5.315 10 C -0.036 4.036 11 H 0.070 0.930 12 C -0.196 4.196 13 C -0.006 4.006 14 N -0.398 5.398 15 C 0.319 3.681 16 O -0.388 6.388 17 C -0.304 4.304 18 S 0.167 5.833 19 C -0.683 4.683 20 H 0.091 0.909 21 C -0.137 4.137 22 N -0.502 5.502 23 Si 0.745 3.255 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.206 1.206 27 C -0.147 4.147 28 H 0.073 0.927 29 H 0.074 0.926 30 H 0.118 0.882 31 H 0.144 0.856 32 H 0.144 0.856 33 H 0.141 0.859 34 H 0.102 0.898 35 H 0.061 0.939 36 H 0.167 0.833 37 H 0.076 0.924 38 H 0.086 0.914 39 H 0.079 0.921 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.226 0.774 43 H 0.108 0.892 44 H 0.107 0.893 45 H 0.078 0.922 46 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -8.895 -19.586 19.700 29.169 hybrid contribution -2.061 2.746 1.598 3.787 sum -10.956 -16.840 21.298 29.278 Atomic orbital electron populations 1.23056 0.78377 1.03954 1.01368 1.86071 1.21386 1.26976 1.88758 1.19023 0.92357 0.84147 0.96604 1.21251 1.00031 0.92478 1.08923 1.20925 0.94570 0.97073 0.97140 1.21005 0.93942 0.97994 1.03958 1.19525 0.95027 0.92303 0.97739 1.20955 0.90276 1.01613 0.90258 1.60550 1.05819 1.52436 1.12655 1.21806 0.87709 0.97453 0.96637 0.93033 1.21735 1.00007 0.95228 1.02658 1.21519 0.97820 0.84268 0.97020 1.46042 1.49477 1.20576 1.23709 1.20287 0.81424 0.85711 0.80656 1.90710 1.35285 1.71782 1.40998 1.23534 1.03349 0.95985 1.07578 1.85419 1.60752 1.19977 1.17139 1.22900 1.31392 1.04569 1.09428 0.90900 1.25000 0.95535 0.98569 0.94547 1.70030 1.36112 1.35823 1.08279 0.86115 0.79422 0.81730 0.78206 1.19640 1.20571 1.20551 1.20250 0.91067 0.98285 1.05143 0.92718 0.92559 0.88232 0.85593 0.85644 0.85922 0.89769 0.93851 0.83323 0.92387 0.91449 0.92074 0.90815 0.90546 0.77386 0.89208 0.89306 0.92230 0.85115 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 9.81 101.05 0.99 1.14 16 2 O -0.32 -2.99 10.50 -19.40 -0.20 -3.19 16 3 C 0.12 1.21 6.69 -39.22 -0.26 0.95 16 4 C -0.21 -1.80 9.04 -39.44 -0.36 -2.15 16 5 C -0.08 -0.67 10.04 -39.61 -0.40 -1.06 16 6 C -0.15 -1.29 9.70 -39.56 -0.38 -1.68 16 7 C -0.05 -0.40 5.39 -104.65 -0.56 -0.97 16 8 C 0.10 0.75 5.61 -4.98 -0.03 0.72 16 9 N -0.68 -6.03 6.29 -107.99 -0.68 -6.71 16 10 C 0.07 0.63 2.81 -67.71 -0.19 0.44 16 11 H 0.05 0.41 7.80 -51.93 -0.40 0.00 16 12 C -0.14 -1.06 9.41 37.16 0.35 -0.71 16 13 C 0.12 1.36 5.31 -4.04 -0.02 1.34 16 14 N -0.74 -9.67 4.99 -60.30 -0.30 -9.97 16 15 C 0.53 9.88 7.85 -10.99 -0.09 9.79 16 16 O -0.51 -11.71 15.86 5.56 0.09 -11.62 16 17 C -0.15 -3.08 6.16 36.01 0.22 -2.85 16 18 S -0.06 -1.61 20.57 -107.50 -2.21 -3.83 16 19 C -0.53 -15.20 9.50 30.94 0.29 -14.91 16 20 H 0.07 1.96 7.80 -52.49 -0.41 1.55 16 21 C 0.07 2.07 5.49 -17.43 -0.10 1.98 16 22 N -0.87 -26.17 13.22 55.49 0.73 -25.43 16 23 Si 0.92 21.38 29.55 -169.99 -5.02 16.35 16 24 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 25 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 26 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 27 C -0.13 -1.24 9.64 -39.43 -0.38 -1.62 16 28 H 0.05 0.24 7.66 -51.93 -0.40 -0.16 16 29 H 0.06 0.28 7.66 -51.93 -0.40 -0.12 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.13 0.83 6.30 -52.48 -0.33 0.50 16 32 H 0.13 0.83 8.06 -52.49 -0.42 0.41 16 33 H 0.12 0.89 8.06 -52.49 -0.42 0.46 16 34 H 0.08 0.60 7.38 -51.93 -0.38 0.21 16 35 H 0.04 0.30 8.00 -51.93 -0.42 -0.12 16 36 H 0.35 3.29 6.70 -39.29 -0.26 3.03 16 37 H 0.06 0.40 7.45 -51.92 -0.39 0.01 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 40 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.08 1.00 8.14 -51.93 -0.42 0.57 16 42 H 0.39 4.00 7.37 -40.82 -0.30 3.70 16 43 H 0.09 1.66 8.14 -51.92 -0.42 1.23 16 44 H 0.09 1.63 8.14 -51.92 -0.42 1.21 16 45 H 0.27 7.49 8.31 -40.82 -0.34 7.15 16 46 H 0.13 1.19 8.06 -52.48 -0.42 0.77 16 LS Contribution 398.36 15.07 6.00 6.00 Total: -1.00 -35.18 398.36 -9.56 -44.74 By element: Atomic # 1 Polarization: 10.31 SS G_CDS: -7.05 Total: 3.25 kcal Atomic # 6 Polarization: -8.68 SS G_CDS: -0.91 Total: -9.59 kcal Atomic # 7 Polarization: -41.87 SS G_CDS: -0.25 Total: -42.11 kcal Atomic # 8 Polarization: -14.70 SS G_CDS: -0.12 Total: -14.81 kcal Atomic # 14 Polarization: 21.38 SS G_CDS: -5.02 Total: 16.35 kcal Atomic # 16 Polarization: -1.61 SS G_CDS: -2.21 Total: -3.83 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -35.18 -9.56 -44.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317226997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.762 kcal (2) G-P(sol) polarization free energy of solvation -35.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.945 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.556 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.739 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds