Wall clock time and date at job start Tue Mar 31 2020 21:01:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35892 * 116.99944 * 2 1 4 4 C 1.38748 * 120.06078 * 0.02562 * 3 2 1 5 5 C 1.38123 * 119.94751 * 179.97438 * 4 3 2 6 6 C 1.38286 * 120.05353 * 359.74870 * 5 4 3 7 7 C 1.38248 * 120.11073 * 0.50456 * 6 5 4 8 8 C 1.50703 * 119.97052 * 179.76930 * 7 6 5 9 9 N 1.46899 * 109.47107 * 269.72443 * 8 7 6 10 10 C 1.46904 * 111.00029 * 179.97438 * 9 8 7 11 11 H 1.08998 * 109.46835 * 325.00273 * 10 9 8 12 12 C 1.52997 * 109.46874 * 85.00270 * 10 9 8 13 13 C 1.53002 * 109.46992 * 205.00108 * 10 9 8 14 14 N 1.46498 * 109.47327 * 55.00149 * 13 10 9 15 15 C 1.34766 * 120.00168 * 179.97438 * 14 13 10 16 16 O 1.21280 * 119.99939 * 0.02562 * 15 14 13 17 17 C 1.50701 * 120.00112 * 180.02562 * 15 14 13 18 18 S 1.81003 * 109.47247 * 180.02562 * 17 15 14 19 19 C 1.76202 * 100.00188 * 180.02562 * 18 17 15 20 20 H 1.07995 * 119.99655 * 359.97438 * 19 18 17 21 21 C 1.38795 * 119.99900 * 179.97438 * 19 18 17 22 22 N 1.31633 * 120.00156 * 0.02562 * 21 19 18 23 23 Si 1.86805 * 119.99802 * 179.97438 * 21 19 18 24 24 H 1.48496 * 109.47176 * 0.02562 * 23 21 19 25 25 H 1.48507 * 109.46786 * 120.00019 * 23 21 19 26 26 H 1.48500 * 109.47398 * 240.00137 * 23 21 19 27 27 C 1.38160 * 120.05402 * 359.49342 * 7 6 5 28 28 H 1.09004 * 109.47026 * 300.00125 * 1 2 3 29 29 H 1.08997 * 109.47028 * 60.00257 * 1 2 3 30 30 H 1.09003 * 109.47320 * 180.02562 * 1 2 3 31 31 H 1.08003 * 120.02625 * 359.95863 * 4 3 2 32 32 H 1.08000 * 119.97132 * 180.02562 * 5 4 3 33 33 H 1.08000 * 119.94159 * 180.27931 * 6 5 4 34 34 H 1.09002 * 109.47152 * 149.72530 * 8 7 6 35 35 H 1.09001 * 109.46980 * 29.72630 * 8 7 6 36 36 H 1.00908 * 110.99847 * 56.05051 * 9 8 7 37 37 H 1.09007 * 109.47004 * 300.00081 * 12 10 9 38 38 H 1.09007 * 109.47280 * 59.99720 * 12 10 9 39 39 H 1.08997 * 109.47489 * 179.97438 * 12 10 9 40 40 H 1.08995 * 109.46473 * 175.00444 * 13 10 9 41 41 H 1.09002 * 109.47052 * 295.00087 * 13 10 9 42 42 H 0.97004 * 119.99521 * 359.97438 * 14 13 10 43 43 H 1.08995 * 109.47469 * 299.99950 * 17 15 14 44 44 H 1.09002 * 109.47277 * 60.00340 * 17 15 14 45 45 H 0.97000 * 119.99519 * 179.97438 * 22 21 19 46 46 H 1.08005 * 120.02501 * 180.23067 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 1.2915 2.3752 0.0005 5 6 1.9210 3.6047 0.0011 6 6 3.3020 3.6756 0.0063 7 6 4.0560 2.5169 0.0005 8 6 5.5609 2.5979 0.0010 9 7 6.0503 2.6246 -1.3838 10 6 7.5166 2.7042 -1.4225 11 1 7.8695 3.3135 -0.5905 12 6 8.1068 1.2971 -1.3105 13 6 7.9582 3.3388 -2.7428 14 7 7.2983 4.6366 -2.9057 15 6 7.5383 5.3816 -4.0027 16 8 8.3003 4.9776 -4.8554 17 6 6.8600 6.7169 -4.1700 18 16 7.3823 7.4676 -5.7320 19 6 6.4656 8.9711 -5.6705 20 1 5.8245 9.1785 -4.8265 21 6 6.5675 9.8889 -6.7068 22 7 7.3485 9.6358 -7.7357 23 14 5.5951 11.4826 -6.6419 24 1 4.7985 11.5258 -5.3894 25 1 6.5311 12.6351 -6.6727 26 1 4.6832 11.5540 -7.8117 27 6 3.4311 1.2847 0.0000 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3634 -1.0277 0.0005 31 1 0.2129 2.3203 0.0003 32 1 1.3341 4.5113 0.0019 33 1 3.7923 4.6379 0.0113 34 1 5.9714 1.7286 0.5147 35 1 5.8756 3.5060 0.5152 36 1 5.6335 3.3849 -1.9000 37 1 7.7921 0.8450 -0.3698 38 1 7.7539 0.6877 -2.1425 39 1 9.1948 1.3560 -1.3397 40 1 9.0391 3.4792 -2.7348 41 1 7.6829 2.6848 -3.5703 42 1 6.6886 4.9595 -2.2239 43 1 5.7791 6.5768 -4.1782 44 1 7.1353 7.3706 -3.3424 45 1 7.4193 10.2771 -8.4600 46 1 4.0206 0.3798 -0.0008 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317226997.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:01:13 Heat of formation + Delta-G solvation = -76.203447 kcal Electronic energy + Delta-G solvation = -25663.192417 eV Core-core repulsion = 21871.156984 eV Total energy + Delta-G solvation = -3792.035433 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.11244 -40.74376 -39.03906 -37.94161 -35.18478 -34.57906 -33.27659 -31.60671 -30.99796 -30.23573 -28.17215 -27.74142 -26.93437 -25.68603 -23.48868 -21.96870 -21.80069 -21.64235 -19.86769 -18.80127 -17.93881 -17.47084 -17.24706 -17.02415 -16.93354 -16.87812 -16.63227 -16.31213 -15.98987 -15.84219 -15.00676 -14.91317 -14.65655 -14.50952 -14.28109 -14.14380 -13.72650 -13.50455 -13.34659 -13.25962 -13.15669 -12.94698 -12.90461 -12.78882 -12.66218 -12.53856 -12.32216 -11.97498 -11.84740 -11.68969 -11.65426 -11.15640 -10.98770 -10.26690 -10.17900 -9.84681 -9.43530 -9.13700 -8.66343 -8.34455 -6.12362 0.32907 0.50417 1.26950 1.41765 1.47290 1.58222 1.59653 2.23047 2.28263 2.37722 2.71877 2.99843 3.26607 3.33738 3.69199 3.81822 3.89413 3.95761 4.12547 4.21351 4.24197 4.29548 4.33237 4.36673 4.37734 4.42926 4.50312 4.54770 4.63739 4.68883 4.72586 4.82437 4.87636 4.96928 5.04252 5.10379 5.31794 5.35520 5.42626 5.45446 5.50436 5.62746 5.81679 6.01918 6.20477 6.31581 6.41617 6.46670 7.07035 7.20145 8.74983 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.010686 B = 0.002252 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2619.528927 B =12430.654253 C =14443.372053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.339 6.339 3 C 0.108 3.892 4 C -0.214 4.214 5 C -0.087 4.087 6 C -0.159 4.159 7 C -0.050 4.050 8 C 0.101 3.899 9 N -0.689 5.689 10 C 0.086 3.914 11 H 0.069 0.931 12 C -0.136 4.136 13 C 0.118 3.882 14 N -0.714 5.714 15 C 0.535 3.465 16 O -0.564 6.564 17 C -0.129 4.129 18 S -0.152 6.152 19 C -0.544 4.544 20 H 0.084 0.916 21 C 0.011 3.989 22 N -0.912 5.912 23 Si 0.999 3.001 24 H -0.256 1.256 25 H -0.274 1.274 26 H -0.275 1.275 27 C -0.147 4.147 28 H 0.065 0.935 29 H 0.060 0.940 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.138 0.862 34 H 0.090 0.910 35 H 0.058 0.942 36 H 0.342 0.658 37 H 0.069 0.931 38 H 0.054 0.946 39 H 0.069 0.931 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.411 0.589 43 H 0.110 0.890 44 H 0.111 0.889 45 H 0.271 0.729 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.889 -17.418 23.771 31.778 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 O -0.253 6.253 3 C 0.063 3.937 4 C -0.233 4.233 5 C -0.105 4.105 6 C -0.177 4.177 7 C -0.050 4.050 8 C -0.027 4.027 9 N -0.323 5.323 10 C -0.024 4.024 11 H 0.087 0.913 12 C -0.194 4.194 13 C -0.005 4.005 14 N -0.369 5.369 15 C 0.321 3.679 16 O -0.442 6.442 17 C -0.281 4.281 18 S 0.075 5.925 19 C -0.691 4.691 20 H 0.102 0.898 21 C -0.193 4.193 22 N -0.548 5.548 23 Si 0.821 3.179 24 H -0.179 1.179 25 H -0.200 1.200 26 H -0.200 1.200 27 C -0.166 4.166 28 H 0.084 0.916 29 H 0.079 0.921 30 H 0.135 0.865 31 H 0.160 0.840 32 H 0.161 0.839 33 H 0.156 0.844 34 H 0.108 0.892 35 H 0.077 0.923 36 H 0.162 0.838 37 H 0.088 0.912 38 H 0.074 0.926 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.078 0.922 42 H 0.248 0.752 43 H 0.128 0.872 44 H 0.129 0.871 45 H 0.080 0.920 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -10.474 -18.944 22.151 30.971 hybrid contribution -1.620 2.399 0.950 3.047 sum -12.094 -16.544 23.101 30.881 Atomic orbital electron populations 1.23305 0.76632 1.05433 1.02099 1.86039 1.23328 1.27142 1.88833 1.19250 0.92708 0.84722 0.97069 1.21495 1.00992 0.92259 1.08570 1.21235 0.94912 0.97698 0.96650 1.21261 0.94224 0.98535 1.03703 1.19671 0.95723 0.92113 0.97528 1.20971 0.89515 1.02619 0.89575 1.60555 1.05824 1.52398 1.13562 1.21731 0.87677 0.97911 0.95067 0.91315 1.21730 1.00508 0.94424 1.02780 1.21629 0.97600 0.82986 0.98332 1.45743 1.48688 1.20301 1.22188 1.20054 0.80861 0.85551 0.81416 1.90701 1.37611 1.72739 1.43124 1.23370 1.04439 0.96656 1.03602 1.85616 1.62221 1.21517 1.23170 1.23227 1.31356 1.04641 1.09924 0.89835 1.26144 0.96549 1.02676 0.93942 1.70195 1.37945 1.37415 1.09263 0.84898 0.77786 0.76358 0.78851 1.17923 1.19976 1.20006 1.20415 0.91423 0.98710 1.06040 0.91624 0.92114 0.86508 0.83951 0.83892 0.84444 0.89167 0.92344 0.83805 0.91190 0.92641 0.91239 0.91080 0.92169 0.75240 0.87163 0.87102 0.92025 0.85399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.19 9.81 113.37 1.11 1.31 16 2 O -0.34 -6.25 10.50 -92.34 -0.97 -7.22 16 3 C 0.11 2.05 6.69 22.51 0.15 2.20 16 4 C -0.21 -3.44 9.04 22.36 0.20 -3.23 16 5 C -0.09 -1.31 10.04 22.25 0.22 -1.09 16 6 C -0.16 -2.42 9.70 22.28 0.22 -2.20 16 7 C -0.05 -0.81 5.39 -19.88 -0.11 -0.92 16 8 C 0.10 1.31 5.61 85.56 0.48 1.79 16 9 N -0.69 -10.79 6.29 -495.57 -3.12 -13.90 16 10 C 0.09 1.27 2.81 44.91 0.13 1.40 16 11 H 0.07 0.84 7.80 -2.39 -0.02 0.82 16 12 C -0.14 -1.83 9.41 71.98 0.68 -1.15 16 13 C 0.12 2.58 5.31 86.38 0.46 3.04 16 14 N -0.71 -17.29 4.99 -463.08 -2.31 -19.60 16 15 C 0.54 19.45 7.85 87.66 0.69 20.13 16 16 O -0.56 -26.14 15.86 -3.03 -0.05 -26.19 16 17 C -0.13 -5.03 6.16 71.24 0.44 -4.59 16 18 S -0.15 -8.44 20.57 -56.49 -1.16 -9.60 16 19 C -0.54 -30.83 9.50 67.95 0.65 -30.19 16 20 H 0.08 4.38 7.80 -2.91 -0.02 4.36 16 21 C 0.01 0.65 5.49 84.86 0.47 1.12 16 22 N -0.91 -56.01 13.22 21.65 0.29 -55.72 16 23 Si 1.00 43.37 29.55 68.60 2.03 45.40 16 24 H -0.26 -10.30 7.11 99.48 0.71 -9.59 16 25 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 26 H -0.27 -11.60 7.11 99.48 0.71 -10.89 16 27 C -0.15 -2.77 9.64 22.36 0.22 -2.55 16 28 H 0.07 0.49 7.66 -2.38 -0.02 0.47 16 29 H 0.06 0.54 7.66 -2.39 -0.02 0.52 16 30 H 0.12 0.69 8.14 -2.39 -0.02 0.68 16 31 H 0.14 1.66 6.30 -2.91 -0.02 1.64 16 32 H 0.14 1.56 8.06 -2.91 -0.02 1.53 16 33 H 0.14 1.60 8.06 -2.91 -0.02 1.58 16 34 H 0.09 1.07 7.38 -2.39 -0.02 1.05 16 35 H 0.06 0.60 8.00 -2.39 -0.02 0.58 16 36 H 0.34 5.73 6.70 -89.69 -0.60 5.13 16 37 H 0.07 0.80 7.45 -2.38 -0.02 0.78 16 38 H 0.05 0.89 8.14 -2.38 -0.02 0.87 16 39 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 40 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 41 H 0.06 1.55 8.14 -2.39 -0.02 1.53 16 42 H 0.41 7.14 7.37 -92.71 -0.68 6.46 16 43 H 0.11 3.84 8.14 -2.40 -0.02 3.82 16 44 H 0.11 3.83 8.14 -2.39 -0.02 3.81 16 45 H 0.27 15.40 8.31 -92.71 -0.77 14.63 16 46 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -78.52 398.36 0.41 -78.11 By element: Atomic # 1 Polarization: 23.94 SS G_CDS: -0.29 Total: 23.65 kcal Atomic # 6 Polarization: -20.93 SS G_CDS: 5.99 Total: -14.94 kcal Atomic # 7 Polarization: -84.08 SS G_CDS: -5.14 Total: -89.22 kcal Atomic # 8 Polarization: -32.39 SS G_CDS: -1.02 Total: -33.40 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Atomic # 16 Polarization: -8.44 SS G_CDS: -1.16 Total: -9.60 kcal Total: -78.52 0.41 -78.11 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317226997.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.911 kcal (2) G-P(sol) polarization free energy of solvation -78.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.203 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds