Wall clock time and date at job start Tue Mar 31 2020 20:18:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36208 * 117.00297 * 2 1 4 4 C 1.34083 * 122.49905 * 359.70600 * 3 2 1 5 5 S 1.70607 * 110.97287 * 179.85926 * 4 3 2 6 6 C 1.75810 * 91.61992 * 0.34237 * 5 4 3 7 7 C 1.46553 * 125.42460 * 179.79094 * 6 5 4 8 8 O 1.21713 * 119.99602 * 210.83992 * 7 6 5 9 9 N 1.34770 * 119.99939 * 30.83392 * 7 6 5 10 10 C 1.46923 * 120.63276 * 6.20159 * 9 7 6 11 11 C 1.53621 * 108.54528 * 126.36546 * 10 9 7 12 12 C 1.53041 * 109.24138 * 54.86005 * 11 10 9 13 13 C 1.53005 * 109.46041 * 178.49317 * 12 11 10 14 14 H 1.08999 * 109.46918 * 60.06513 * 13 12 11 15 15 C 1.52994 * 109.47003 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.46883 * 300.06112 * 13 12 11 17 17 C 1.36930 * 119.99731 * 154.99911 * 16 13 12 18 18 H 1.08002 * 120.00425 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00159 * 180.02562 * 17 16 13 20 20 N 1.31619 * 120.00339 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99722 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47232 * 90.00131 * 21 19 17 23 23 H 1.48499 * 109.47610 * 209.99876 * 21 19 17 24 24 H 1.48502 * 109.47180 * 330.00102 * 21 19 17 25 25 C 1.53041 * 109.53344 * 298.50934 * 12 11 10 26 26 C 1.46930 * 120.63146 * 186.47743 * 9 7 6 27 27 C 1.36741 * 109.14827 * 359.80573 * 6 5 4 28 28 H 1.08999 * 109.47093 * 60.00196 * 1 2 3 29 29 H 1.09007 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47371 * 300.00997 * 1 2 3 31 31 H 1.08001 * 124.51175 * 359.97337 * 4 3 2 32 32 H 1.09005 * 109.58543 * 246.19886 * 10 9 7 33 33 H 1.09004 * 109.58671 * 6.62292 * 10 9 7 34 34 H 1.08997 * 109.63868 * 294.86524 * 11 10 9 35 35 H 1.09000 * 109.46317 * 174.73969 * 11 10 9 36 36 H 1.09000 * 109.46576 * 58.52831 * 12 11 10 37 37 H 1.09006 * 109.47593 * 59.99623 * 15 13 12 38 38 H 1.08999 * 109.47318 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47650 * 299.99432 * 15 13 12 40 40 H 0.96996 * 120.00090 * 335.00719 * 16 13 12 41 41 H 0.96999 * 120.00037 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.50139 * 301.41174 * 25 12 11 43 43 H 1.09003 * 109.49791 * 181.32167 * 25 12 11 44 44 H 1.09001 * 109.58341 * 353.37486 * 26 9 7 45 45 H 1.08996 * 109.58432 * 113.65773 * 26 9 7 46 46 H 1.08003 * 123.36983 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3689 -0.0058 5 16 2.4296 3.7036 -0.0001 6 6 3.8354 2.6478 -0.0001 7 6 5.2318 3.0925 -0.0005 8 8 6.0862 2.4147 -0.5408 9 7 5.5698 4.2521 0.5974 10 6 4.5780 5.0135 1.3690 11 6 5.1477 5.2775 2.7710 12 6 6.5073 5.9681 2.6411 13 6 7.0622 6.2674 4.0352 14 1 7.1806 5.3349 4.5870 15 6 8.4211 6.9583 3.9056 16 7 6.1338 7.1448 4.7524 17 6 6.1150 7.1489 6.1215 18 1 6.7849 6.5056 6.6728 19 6 5.2349 7.9799 6.8011 20 7 5.2171 7.9843 8.1172 21 14 4.0758 9.0921 5.8478 22 1 2.8034 8.3726 5.5855 23 1 3.7978 10.3153 6.6426 24 1 4.7044 9.4725 4.5573 25 6 7.4773 5.0515 1.8922 26 6 6.9356 4.7821 0.4849 27 6 3.4183 1.3455 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2896 2.4445 -0.0113 32 1 4.3754 5.9609 0.8695 33 1 3.6568 4.4364 1.4501 34 1 5.2687 4.3329 3.3012 35 1 4.4645 5.9209 3.3254 36 1 6.3897 6.9008 2.0894 37 1 8.3035 7.8908 3.3535 38 1 8.8167 7.1712 4.8988 39 1 9.1117 6.3050 3.3723 40 1 5.5323 7.7228 4.2573 41 1 4.6019 8.5647 8.5920 42 1 7.5764 4.1089 2.4306 43 1 8.4521 5.5341 1.8206 44 1 7.5704 4.0522 -0.0175 45 1 6.9216 5.7096 -0.0874 46 1 4.0960 0.5046 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317674413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:52 Heat of formation + Delta-G solvation = -20.256235 kcal Electronic energy + Delta-G solvation = -27301.260346 eV Core-core repulsion = 23511.650966 eV Total energy + Delta-G solvation = -3789.609380 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -40.50077 -39.93200 -38.09134 -36.09401 -35.58295 -33.03361 -31.50677 -30.97379 -29.71622 -28.69978 -28.20816 -25.78284 -24.68483 -23.36225 -22.86528 -21.60149 -20.44717 -19.82419 -19.30598 -18.50341 -17.53923 -17.41304 -16.54682 -16.13688 -16.02874 -15.46978 -14.90760 -14.81528 -14.36466 -14.33429 -13.94752 -13.80665 -13.48467 -13.38195 -13.14500 -13.02869 -12.71049 -12.55157 -12.43739 -12.37390 -12.03382 -11.74882 -11.44756 -11.32343 -11.22059 -11.13209 -10.95824 -10.82636 -10.44318 -10.38925 -10.15045 -10.07030 -9.86933 -9.58166 -9.21663 -8.94838 -8.73154 -8.21406 -7.27241 -5.77607 -3.12669 0.22058 1.10176 1.59155 2.15176 2.61153 2.95727 3.12004 3.34143 3.36099 3.42987 4.29148 4.57148 4.62809 4.65702 4.73527 4.79913 4.88025 4.94453 4.96356 5.07993 5.11415 5.22487 5.34313 5.36189 5.44606 5.56091 5.60354 5.62089 5.71385 5.75738 5.80422 5.88562 5.99049 6.10612 6.18566 6.29969 6.34591 6.39137 6.52198 6.58360 6.84248 6.88410 7.03027 7.18155 7.91470 7.99497 8.41641 9.20446 9.92826 10.12999 11.41061 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003144 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.474799 B = 8905.047529 C =10365.546631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.104 3.896 4 C -0.357 4.357 5 S 0.250 5.750 6 C -0.238 4.238 7 C 0.592 3.408 8 O -0.530 6.530 9 N -0.601 5.601 10 C 0.089 3.911 11 C -0.121 4.121 12 C -0.094 4.094 13 C 0.183 3.817 14 H 0.054 0.946 15 C -0.167 4.167 16 N -0.747 5.747 17 C -0.238 4.238 18 H 0.089 0.911 19 C 0.003 3.997 20 N -0.935 5.935 21 Si 0.882 3.118 22 H -0.284 1.284 23 H -0.292 1.292 24 H -0.277 1.277 25 C -0.128 4.128 26 C 0.114 3.886 27 C -0.071 4.071 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.055 0.945 31 H 0.170 0.830 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.068 0.932 37 H 0.044 0.956 38 H 0.056 0.944 39 H 0.042 0.958 40 H 0.359 0.641 41 H 0.259 0.741 42 H 0.069 0.931 43 H 0.081 0.919 44 H 0.092 0.908 45 H 0.069 0.931 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.262 -10.684 -20.398 24.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.221 6.221 3 C 0.047 3.953 4 C -0.494 4.494 5 S 0.517 5.483 6 C -0.359 4.359 7 C 0.379 3.621 8 O -0.408 6.408 9 N -0.334 5.334 10 C -0.034 4.034 11 C -0.159 4.159 12 C -0.113 4.113 13 C 0.074 3.926 14 H 0.072 0.928 15 C -0.227 4.227 16 N -0.390 5.390 17 C -0.368 4.368 18 H 0.107 0.893 19 C -0.193 4.193 20 N -0.584 5.584 21 Si 0.712 3.288 22 H -0.211 1.211 23 H -0.219 1.219 24 H -0.203 1.203 25 C -0.166 4.166 26 C -0.007 4.007 27 C -0.106 4.106 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.187 0.813 32 H 0.094 0.906 33 H 0.104 0.896 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.087 0.913 37 H 0.063 0.937 38 H 0.075 0.925 39 H 0.061 0.939 40 H 0.192 0.808 41 H 0.069 0.931 42 H 0.088 0.912 43 H 0.100 0.900 44 H 0.111 0.889 45 H 0.088 0.912 46 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges -6.942 -9.711 -20.433 23.664 hybrid contribution -1.260 -0.480 -0.392 1.404 sum -8.202 -10.191 -20.824 24.592 Atomic orbital electron populations 1.23044 0.78180 1.04006 1.01312 1.86110 1.21296 1.25216 1.89429 1.17523 0.91480 0.84769 1.01490 1.25333 1.06194 0.98434 1.19437 1.83233 0.91787 1.05769 1.67518 1.24401 0.97953 0.97577 1.15959 1.16887 0.85850 0.80731 0.78669 1.90827 1.49853 1.54139 1.46010 1.47989 1.12577 1.22023 1.50830 1.22410 0.91291 0.96409 0.93338 1.21952 0.97698 1.02077 0.94158 1.21445 0.94394 0.97886 0.97623 1.20184 0.89035 0.93673 0.89725 0.92755 1.22463 0.98723 1.00005 1.01472 1.42782 1.43983 1.48279 1.03962 1.19064 1.17321 1.19755 0.80697 0.89314 1.24664 0.99620 0.99766 0.95201 1.69698 1.40626 1.42527 1.05505 0.86587 0.81711 0.81098 0.79362 1.21104 1.21876 1.20329 1.22012 0.99331 1.00612 0.94688 1.21706 0.81726 0.99268 0.98038 1.19889 0.92950 0.96677 1.01050 0.92808 0.88104 0.92638 0.81271 0.90649 0.89577 0.91175 0.89374 0.91345 0.93701 0.92529 0.93925 0.80780 0.93120 0.91249 0.90012 0.88916 0.91244 0.82251 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.93 101.05 1.00 1.19 16 2 O -0.31 -3.15 10.56 -20.40 -0.22 -3.37 16 3 C 0.10 1.13 6.61 -41.23 -0.27 0.85 16 4 C -0.36 -3.30 9.81 29.27 0.29 -3.01 16 5 S 0.25 2.34 19.32 -107.50 -2.08 0.26 16 6 C -0.24 -2.86 5.73 -36.77 -0.21 -3.07 16 7 C 0.59 8.12 7.58 -12.91 -0.10 8.02 16 8 O -0.53 -8.74 16.41 5.18 0.08 -8.66 16 9 N -0.60 -7.35 2.97 -174.09 -0.52 -7.87 16 10 C 0.09 1.01 5.55 -3.49 -0.02 0.99 16 11 C -0.12 -1.66 5.24 -26.39 -0.14 -1.80 16 12 C -0.09 -1.30 1.78 -90.58 -0.16 -1.46 16 13 C 0.18 3.24 2.47 -67.93 -0.17 3.07 16 14 H 0.05 1.04 8.08 -51.93 -0.42 0.62 16 15 C -0.17 -2.75 9.14 37.15 0.34 -2.41 16 16 N -0.75 -16.47 4.21 -53.43 -0.22 -16.69 16 17 C -0.24 -6.45 10.41 -15.06 -0.16 -6.61 16 18 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 19 C 0.00 0.08 5.50 -17.43 -0.10 -0.01 16 20 N -0.94 -28.91 13.97 55.49 0.78 -28.13 16 21 Si 0.88 21.32 27.74 -169.99 -4.71 16.60 16 22 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 23 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 24 H -0.28 -6.26 6.52 56.52 0.37 -5.89 16 25 C -0.13 -1.52 5.04 -26.61 -0.13 -1.65 16 26 C 0.11 1.29 6.44 -3.71 -0.02 1.27 16 27 C -0.07 -0.84 10.13 -40.31 -0.41 -1.25 16 28 H 0.05 0.28 7.83 -51.93 -0.41 -0.13 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.31 7.85 -51.93 -0.41 -0.10 16 31 H 0.17 1.18 6.96 -52.49 -0.37 0.81 16 32 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.92 3.98 -26.22 -0.10 0.82 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.35 7.40 -51.93 -0.38 0.96 16 36 H 0.07 0.93 8.14 -51.93 -0.42 0.50 16 37 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 38 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 39 H 0.04 0.58 6.40 -51.93 -0.33 0.25 16 40 H 0.36 7.76 5.44 -40.82 -0.22 7.54 16 41 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 42 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.08 0.88 6.36 -51.93 -0.33 0.55 16 44 H 0.09 1.10 7.00 -51.93 -0.36 0.74 16 45 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 46 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 374.14 15.07 5.64 5.64 Total: -1.00 -32.89 374.14 -8.24 -41.13 By element: Atomic # 1 Polarization: 13.70 SS G_CDS: -6.73 Total: 6.97 kcal Atomic # 6 Polarization: -5.61 SS G_CDS: -0.26 Total: -5.87 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.03 Total: -52.70 kcal Atomic # 8 Polarization: -11.89 SS G_CDS: -0.13 Total: -12.02 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -4.71 Total: 16.60 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -2.08 Total: 0.26 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.89 -8.24 -41.13 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317674413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 20.869 kcal (2) G-P(sol) polarization free energy of solvation -32.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.016 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.240 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.125 kcal (6) G-S(sol) free energy of system = (1) + (5) -20.256 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds