Wall clock time and date at job start Tue Mar 31 2020 20:18:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42894 * 1 3 3 C 1.36208 * 117.00297 * 2 1 4 4 C 1.34083 * 122.49905 * 359.70600 * 3 2 1 5 5 S 1.70607 * 110.97287 * 179.85926 * 4 3 2 6 6 C 1.75810 * 91.61992 * 0.34237 * 5 4 3 7 7 C 1.46553 * 125.42460 * 179.79094 * 6 5 4 8 8 O 1.21713 * 119.99602 * 210.83992 * 7 6 5 9 9 N 1.34770 * 119.99939 * 30.83392 * 7 6 5 10 10 C 1.46923 * 120.63276 * 6.20159 * 9 7 6 11 11 C 1.53621 * 108.54528 * 126.36546 * 10 9 7 12 12 C 1.53041 * 109.24138 * 54.86005 * 11 10 9 13 13 C 1.53005 * 109.46041 * 178.49317 * 12 11 10 14 14 H 1.08999 * 109.46918 * 60.06513 * 13 12 11 15 15 C 1.52994 * 109.47003 * 180.02562 * 13 12 11 16 16 N 1.46500 * 109.46883 * 300.06112 * 13 12 11 17 17 C 1.36930 * 119.99731 * 154.99911 * 16 13 12 18 18 H 1.08002 * 120.00425 * 0.02562 * 17 16 13 19 19 C 1.38816 * 120.00159 * 180.02562 * 17 16 13 20 20 N 1.31619 * 120.00339 * 180.02562 * 19 17 16 21 21 Si 1.86796 * 119.99722 * 0.02562 * 19 17 16 22 22 H 1.48501 * 109.47232 * 90.00131 * 21 19 17 23 23 H 1.48499 * 109.47610 * 209.99876 * 21 19 17 24 24 H 1.48502 * 109.47180 * 330.00102 * 21 19 17 25 25 C 1.53041 * 109.53344 * 298.50934 * 12 11 10 26 26 C 1.46930 * 120.63146 * 186.47743 * 9 7 6 27 27 C 1.36741 * 109.14827 * 359.80573 * 6 5 4 28 28 H 1.08999 * 109.47093 * 60.00196 * 1 2 3 29 29 H 1.09007 * 109.47434 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47371 * 300.00997 * 1 2 3 31 31 H 1.08001 * 124.51175 * 359.97337 * 4 3 2 32 32 H 1.09005 * 109.58543 * 246.19886 * 10 9 7 33 33 H 1.09004 * 109.58671 * 6.62292 * 10 9 7 34 34 H 1.08997 * 109.63868 * 294.86524 * 11 10 9 35 35 H 1.09000 * 109.46317 * 174.73969 * 11 10 9 36 36 H 1.09000 * 109.46576 * 58.52831 * 12 11 10 37 37 H 1.09006 * 109.47593 * 59.99623 * 15 13 12 38 38 H 1.08999 * 109.47318 * 180.02562 * 15 13 12 39 39 H 1.09005 * 109.47650 * 299.99432 * 15 13 12 40 40 H 0.96996 * 120.00090 * 335.00719 * 16 13 12 41 41 H 0.96999 * 120.00037 * 180.02562 * 20 19 17 42 42 H 1.08999 * 109.50139 * 301.41174 * 25 12 11 43 43 H 1.09003 * 109.49791 * 181.32167 * 25 12 11 44 44 H 1.09001 * 109.58341 * 353.37486 * 26 9 7 45 45 H 1.08996 * 109.58432 * 113.65773 * 26 9 7 46 46 H 1.08003 * 123.36983 * 179.97438 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0474 1.2136 0.0000 4 6 1.3669 2.3689 -0.0058 5 16 2.4296 3.7036 -0.0001 6 6 3.8354 2.6478 -0.0001 7 6 5.2318 3.0925 -0.0005 8 8 6.0862 2.4147 -0.5408 9 7 5.5698 4.2521 0.5974 10 6 4.5780 5.0135 1.3690 11 6 5.1477 5.2775 2.7710 12 6 6.5073 5.9681 2.6411 13 6 7.0622 6.2674 4.0352 14 1 7.1806 5.3349 4.5870 15 6 8.4211 6.9583 3.9056 16 7 6.1338 7.1448 4.7524 17 6 6.1150 7.1489 6.1215 18 1 6.7849 6.5056 6.6728 19 6 5.2349 7.9799 6.8011 20 7 5.2171 7.9843 8.1172 21 14 4.0758 9.0921 5.8478 22 1 2.8034 8.3726 5.5855 23 1 3.7978 10.3153 6.6426 24 1 4.7044 9.4725 4.5573 25 6 7.4773 5.0515 1.8922 26 6 6.9356 4.7821 0.4849 27 6 3.4183 1.3455 0.0000 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5140 0.8899 31 1 0.2896 2.4445 -0.0113 32 1 4.3754 5.9609 0.8695 33 1 3.6568 4.4364 1.4501 34 1 5.2687 4.3329 3.3012 35 1 4.4645 5.9209 3.3254 36 1 6.3897 6.9008 2.0894 37 1 8.3035 7.8908 3.3535 38 1 8.8167 7.1712 4.8988 39 1 9.1117 6.3050 3.3723 40 1 5.5323 7.7228 4.2573 41 1 4.6019 8.5647 8.5920 42 1 7.5764 4.1089 2.4306 43 1 8.4521 5.5341 1.8206 44 1 7.5704 4.0522 -0.0175 45 1 6.9216 5.7096 -0.0874 46 1 4.0960 0.5046 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317674413.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:51 Heat of formation + Delta-G solvation = -41.606312 kcal Electronic energy + Delta-G solvation = -27302.186154 eV Core-core repulsion = 23511.650966 eV Total energy + Delta-G solvation = -3790.535189 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.45987 -40.70904 -39.27346 -37.08706 -36.78220 -34.68587 -32.96169 -32.20468 -30.88176 -29.95486 -28.77889 -26.87016 -25.89071 -24.79455 -23.94275 -22.67223 -21.62885 -21.10103 -20.14923 -19.72782 -19.16938 -18.12478 -17.50534 -16.94763 -16.83696 -16.71895 -16.32969 -16.00491 -15.54378 -15.29134 -15.12105 -14.90948 -14.81010 -14.52756 -14.33581 -14.00566 -13.91341 -13.71923 -13.63972 -13.40418 -13.11088 -12.90871 -12.76160 -12.61339 -12.33266 -12.21855 -12.14023 -12.02039 -11.83857 -11.78600 -11.53210 -11.41040 -11.26517 -11.07639 -10.88782 -10.05406 -9.70650 -9.24409 -8.95033 -7.96367 -5.28752 -0.61822 0.31035 0.82264 1.30660 1.41337 1.46124 1.53515 1.70022 2.02385 2.44115 2.54254 3.35467 3.40179 3.57021 3.76720 3.80157 3.91840 4.07491 4.10448 4.14202 4.32496 4.37040 4.38835 4.39186 4.52613 4.54800 4.58778 4.71973 4.72147 4.77592 4.80259 4.86973 4.89918 4.99660 5.02586 5.08746 5.12224 5.24315 5.31032 5.46764 5.53674 5.67063 5.83989 6.18312 6.25104 6.27836 6.91537 7.15276 7.91706 8.12311 9.25888 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.012511 B = 0.003144 C = 0.002701 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2237.474799 B = 8905.047529 C =10365.546631 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.328 6.328 3 C 0.087 3.913 4 C -0.347 4.347 5 S 0.300 5.700 6 C -0.267 4.267 7 C 0.589 3.411 8 O -0.568 6.568 9 N -0.599 5.599 10 C 0.094 3.906 11 C -0.120 4.120 12 C -0.083 4.083 13 C 0.177 3.823 14 H 0.031 0.969 15 C -0.159 4.159 16 N -0.746 5.746 17 C -0.221 4.221 18 H 0.048 0.952 19 C -0.070 4.070 20 N -0.991 5.991 21 Si 0.955 3.045 22 H -0.274 1.274 23 H -0.304 1.304 24 H -0.246 1.246 25 C -0.120 4.120 26 C 0.115 3.885 27 C -0.084 4.084 28 H 0.066 0.934 29 H 0.117 0.883 30 H 0.063 0.937 31 H 0.196 0.804 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.050 0.950 35 H 0.076 0.924 36 H 0.087 0.913 37 H 0.055 0.945 38 H 0.024 0.976 39 H 0.075 0.925 40 H 0.367 0.633 41 H 0.255 0.745 42 H 0.053 0.947 43 H 0.099 0.901 44 H 0.085 0.915 45 H 0.096 0.904 46 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.952 -9.342 -23.399 26.738 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.243 6.243 3 C 0.031 3.969 4 C -0.485 4.485 5 S 0.568 5.432 6 C -0.387 4.387 7 C 0.377 3.623 8 O -0.449 6.449 9 N -0.331 5.331 10 C -0.029 4.029 11 C -0.158 4.158 12 C -0.103 4.103 13 C 0.069 3.931 14 H 0.049 0.951 15 C -0.219 4.219 16 N -0.390 5.390 17 C -0.352 4.352 18 H 0.066 0.934 19 C -0.261 4.261 20 N -0.642 5.642 21 Si 0.782 3.218 22 H -0.199 1.199 23 H -0.231 1.231 24 H -0.170 1.170 25 C -0.158 4.158 26 C -0.007 4.007 27 C -0.119 4.119 28 H 0.085 0.915 29 H 0.136 0.864 30 H 0.081 0.919 31 H 0.213 0.787 32 H 0.121 0.879 33 H 0.110 0.890 34 H 0.069 0.931 35 H 0.094 0.906 36 H 0.105 0.895 37 H 0.074 0.926 38 H 0.043 0.957 39 H 0.093 0.907 40 H 0.200 0.800 41 H 0.064 0.936 42 H 0.072 0.928 43 H 0.118 0.882 44 H 0.104 0.896 45 H 0.114 0.886 46 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -8.615 -8.374 -23.486 26.380 hybrid contribution -0.704 -1.008 0.592 1.365 sum -9.319 -9.382 -22.894 26.438 Atomic orbital electron populations 1.23332 0.76182 1.05589 1.02267 1.86086 1.23431 1.25192 1.89586 1.17523 0.91190 0.85610 1.02553 1.25682 1.07559 0.97869 1.17352 1.82926 0.89756 1.04506 1.66041 1.24343 0.98284 0.98488 1.17603 1.17141 0.86301 0.80622 0.78228 1.90797 1.51108 1.55209 1.47817 1.48068 1.13153 1.21640 1.50242 1.22452 0.91032 0.97616 0.91808 1.21888 0.97596 1.00811 0.95528 1.21334 0.94634 0.99172 0.95117 1.20394 0.89309 0.91998 0.91402 0.95082 1.22345 0.98195 1.01055 1.00288 1.42720 1.45036 1.49092 1.02110 1.18968 1.15436 1.17862 0.82939 0.93362 1.25529 1.02191 1.02210 0.96131 1.69907 1.42237 1.44215 1.07826 0.85406 0.79489 0.78102 0.78791 1.19941 1.23090 1.16992 1.21940 0.99668 0.99540 0.94651 1.21784 0.81168 1.00148 0.97563 1.19966 0.93783 0.96639 1.01555 0.91520 0.86429 0.91858 0.78685 0.87893 0.89003 0.93118 0.90578 0.89462 0.92598 0.95662 0.90677 0.79964 0.93597 0.92779 0.88250 0.89609 0.88632 0.83365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.21 9.93 113.37 1.13 1.34 16 2 O -0.33 -6.45 10.56 -95.92 -1.01 -7.47 16 3 C 0.09 1.80 6.61 21.20 0.14 1.94 16 4 C -0.35 -5.51 9.81 66.87 0.66 -4.86 16 5 S 0.30 4.78 19.32 -56.49 -1.09 3.69 16 6 C -0.27 -6.16 5.73 24.09 0.14 -6.02 16 7 C 0.59 15.75 7.58 86.41 0.65 16.40 16 8 O -0.57 -18.91 16.41 -4.39 -0.07 -18.98 16 9 N -0.60 -13.45 2.97 -822.92 -2.44 -15.89 16 10 C 0.09 1.86 5.55 86.51 0.48 2.34 16 11 C -0.12 -3.08 5.24 30.82 0.16 -2.91 16 12 C -0.08 -2.10 1.78 -10.76 -0.02 -2.12 16 13 C 0.18 6.09 2.47 44.99 0.11 6.20 16 14 H 0.03 1.21 8.08 -2.39 -0.02 1.19 16 15 C -0.16 -4.99 9.14 71.98 0.66 -4.33 16 16 N -0.75 -32.18 4.21 -322.94 -1.36 -33.54 16 17 C -0.22 -12.20 10.41 84.04 0.87 -11.32 16 18 H 0.05 3.00 8.06 -2.91 -0.02 2.98 16 19 C -0.07 -4.03 5.50 84.86 0.47 -3.57 16 20 N -0.99 -63.18 13.97 21.65 0.30 -62.88 16 21 Si 0.96 43.49 27.74 68.60 1.90 45.39 16 22 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 23 H -0.30 -14.36 7.11 99.48 0.71 -13.65 16 24 H -0.25 -9.79 6.52 99.48 0.65 -9.15 16 25 C -0.12 -2.55 5.04 30.67 0.15 -2.40 16 26 C 0.11 2.30 6.44 86.36 0.56 2.85 16 27 C -0.08 -1.99 10.13 21.80 0.22 -1.77 16 28 H 0.07 0.51 7.83 -2.39 -0.02 0.49 16 29 H 0.12 0.78 8.14 -2.38 -0.02 0.76 16 30 H 0.06 0.55 7.85 -2.39 -0.02 0.53 16 31 H 0.20 1.97 6.96 -2.91 -0.02 1.95 16 32 H 0.10 1.55 8.14 -2.38 -0.02 1.53 16 33 H 0.09 1.72 3.98 -18.73 -0.07 1.65 16 34 H 0.05 1.48 8.14 -2.39 -0.02 1.46 16 35 H 0.08 2.16 7.40 -2.39 -0.02 2.14 16 36 H 0.09 1.95 8.14 -2.39 -0.02 1.94 16 37 H 0.05 1.63 8.14 -2.38 -0.02 1.61 16 38 H 0.02 0.92 8.14 -2.39 -0.02 0.90 16 39 H 0.07 1.85 6.40 -2.38 -0.02 1.84 16 40 H 0.37 14.82 5.44 -92.71 -0.50 14.32 16 41 H 0.26 15.55 8.31 -92.71 -0.77 14.78 16 42 H 0.05 1.33 8.14 -2.39 -0.02 1.31 16 43 H 0.10 1.79 6.36 -2.39 -0.02 1.78 16 44 H 0.09 1.90 7.00 -2.39 -0.02 1.89 16 45 H 0.10 1.47 8.14 -2.39 -0.02 1.45 16 46 H 0.15 3.67 8.06 -2.91 -0.02 3.65 16 Total: -1.00 -74.72 374.14 2.98 -71.74 By element: Atomic # 1 Polarization: 25.80 SS G_CDS: 0.37 Total: 26.16 kcal Atomic # 6 Polarization: -14.61 SS G_CDS: 6.38 Total: -8.23 kcal Atomic # 7 Polarization: -108.81 SS G_CDS: -3.50 Total: -112.31 kcal Atomic # 8 Polarization: -25.36 SS G_CDS: -1.09 Total: -26.45 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 1.90 Total: 45.39 kcal Atomic # 16 Polarization: 4.78 SS G_CDS: -1.09 Total: 3.69 kcal Total: -74.72 2.98 -71.74 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317674413.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.138 kcal (2) G-P(sol) polarization free energy of solvation -74.720 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -44.582 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.976 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.745 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.606 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds