Wall clock time and date at job start Tue Mar 31 2020 20:18:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36212 * 116.99414 * 2 1 4 4 C 1.34083 * 122.50151 * 0.02562 * 3 2 1 5 5 S 1.70601 * 110.96966 * 179.72327 * 4 3 2 6 6 C 1.75813 * 91.62573 * 0.32654 * 5 4 3 7 7 C 1.46539 * 125.42874 * 179.97438 * 6 5 4 8 8 O 1.21716 * 120.00111 * 225.33600 * 7 6 5 9 9 N 1.34771 * 119.99982 * 45.33358 * 7 6 5 10 10 C 1.46926 * 120.63170 * 176.38586 * 9 7 6 11 11 C 1.53190 * 108.77742 * 233.63252 * 10 9 7 12 12 C 1.53045 * 109.31150 * 305.36432 * 11 10 9 13 13 C 1.52996 * 109.45822 * 181.38605 * 12 11 10 14 14 H 1.09004 * 109.47270 * 59.97843 * 13 12 11 15 15 C 1.52999 * 109.47410 * 299.97052 * 13 12 11 16 16 N 1.46502 * 109.47037 * 179.97438 * 13 12 11 17 17 C 1.36938 * 120.00377 * 204.99932 * 16 13 12 18 18 H 1.08004 * 119.99521 * 0.02562 * 17 16 13 19 19 C 1.38808 * 120.00165 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00071 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99957 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46910 * 59.99969 * 21 19 17 23 23 H 1.48504 * 109.46875 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47279 * 299.99876 * 21 19 17 25 25 C 1.53042 * 109.52633 * 61.37059 * 12 11 10 26 26 C 1.46922 * 120.63127 * 356.40960 * 9 7 6 27 27 C 1.36745 * 109.13961 * 359.68045 * 6 5 4 28 28 H 1.08996 * 109.46843 * 60.00321 * 1 2 3 29 29 H 1.09003 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47647 * 299.99619 * 1 2 3 31 31 H 1.07996 * 124.51300 * 0.02562 * 4 3 2 32 32 H 1.09006 * 109.58605 * 113.84508 * 10 9 7 33 33 H 1.09002 * 109.70177 * 353.49052 * 10 9 7 34 34 H 1.09008 * 109.49624 * 185.41552 * 11 10 9 35 35 H 1.08998 * 109.52361 * 65.33279 * 11 10 9 36 36 H 1.09007 * 109.45828 * 301.36115 * 12 11 10 37 37 H 1.09002 * 109.46757 * 60.00064 * 15 13 12 38 38 H 1.08998 * 109.46904 * 300.00391 * 15 13 12 39 39 H 1.08995 * 109.47056 * 180.02562 * 15 13 12 40 40 H 0.96996 * 119.99978 * 25.00230 * 16 13 12 41 41 H 0.97003 * 119.99856 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.49513 * 58.58039 * 25 12 11 43 43 H 1.08999 * 109.49596 * 178.67543 * 25 12 11 44 44 H 1.09002 * 109.59017 * 246.15767 * 26 9 7 45 45 H 1.08998 * 109.59080 * 6.44029 * 26 9 7 46 46 H 1.08005 * 123.36410 * 180.24582 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3667 2.3690 0.0005 5 16 2.4293 3.7036 0.0080 6 6 3.8353 2.6480 0.0005 7 6 5.2315 3.0929 0.0018 8 8 6.0356 2.5760 -0.7517 9 7 5.6253 4.0743 0.8372 10 6 7.0366 4.4769 0.9067 11 6 7.4970 4.4109 2.3663 12 6 6.5591 5.2558 3.2315 13 6 7.0361 5.2202 4.6848 14 1 8.0475 5.6221 4.7453 15 6 7.0304 3.7754 5.1882 16 7 6.1387 6.0294 5.5132 17 6 6.5933 6.5741 6.6845 18 1 7.6136 6.4076 6.9973 19 6 5.7429 7.3404 7.4696 20 7 4.4995 7.5430 7.0886 21 14 6.3629 8.0829 9.0677 22 1 7.5030 8.9907 8.7822 23 1 5.2686 8.8514 9.7137 24 1 6.8101 6.9976 9.9771 25 6 5.1388 4.6922 3.1470 26 6 4.6516 4.7617 1.6963 27 6 3.4182 1.3457 -0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 0.2894 2.4445 0.0013 32 1 7.1446 5.4960 0.5352 33 1 7.6416 3.8015 0.3018 34 1 8.5128 4.7986 2.4453 35 1 7.4748 3.3764 2.7088 36 1 6.5632 6.2852 2.8730 37 1 7.6980 3.1733 4.5719 38 1 6.0190 3.3736 5.1278 39 1 7.3698 3.7501 6.2237 40 1 5.2226 6.1792 5.2321 41 1 3.9054 8.0788 7.6371 42 1 5.1385 3.6549 3.4818 43 1 4.4758 5.2800 3.7819 44 1 4.5650 5.8040 1.3893 45 1 3.6806 4.2738 1.6111 46 1 4.0961 0.5049 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001317674415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:55 Heat of formation + Delta-G solvation = -22.786270 kcal Electronic energy + Delta-G solvation = -27328.454375 eV Core-core repulsion = 23538.735285 eV Total energy + Delta-G solvation = -3789.719090 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.46779 -39.88425 -38.08225 -36.05508 -35.42769 -32.99135 -31.46127 -30.58010 -29.56188 -28.30105 -28.07171 -25.69555 -24.59686 -23.53491 -23.20207 -21.82805 -20.62344 -19.36958 -19.02316 -18.06990 -17.37991 -17.25376 -16.54163 -16.07974 -15.98088 -15.29079 -14.89999 -14.79094 -14.46894 -14.14914 -13.92425 -13.84093 -13.47013 -13.32044 -13.08917 -12.89041 -12.74136 -12.61405 -12.20162 -11.99973 -11.99531 -11.68152 -11.41561 -11.27713 -11.09268 -11.03940 -10.83661 -10.60069 -10.35654 -10.30069 -10.17141 -10.05192 -9.70703 -9.55082 -9.16259 -8.90614 -8.66978 -8.17144 -6.95271 -5.77104 -3.04726 0.31702 1.10519 1.62855 2.22668 2.61201 2.98420 3.16568 3.43398 3.48195 3.48682 4.34547 4.58306 4.67127 4.69393 4.83358 4.83911 5.00096 5.03664 5.08872 5.14691 5.17339 5.36215 5.41586 5.47177 5.55178 5.62983 5.63470 5.76806 5.79120 5.82944 5.95951 5.97930 6.12048 6.19997 6.25348 6.30827 6.47394 6.53929 6.67101 6.76244 6.91959 6.92468 7.16038 7.25115 7.70168 7.96075 8.42627 9.53606 10.12049 10.46556 11.45777 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.002789 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.554649 B =10038.178629 C =11118.092392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.306 6.306 3 C 0.107 3.893 4 C -0.356 4.356 5 S 0.249 5.751 6 C -0.232 4.232 7 C 0.591 3.409 8 O -0.531 6.531 9 N -0.597 5.597 10 C 0.114 3.886 11 C -0.129 4.129 12 C -0.090 4.090 13 C 0.178 3.822 14 H 0.046 0.954 15 C -0.167 4.167 16 N -0.724 5.724 17 C -0.236 4.236 18 H 0.068 0.932 19 C -0.014 4.014 20 N -0.935 5.935 21 Si 0.905 3.095 22 H -0.287 1.287 23 H -0.292 1.292 24 H -0.287 1.287 25 C -0.126 4.126 26 C 0.091 3.909 27 C -0.079 4.079 28 H 0.053 0.947 29 H 0.100 0.900 30 H 0.055 0.945 31 H 0.170 0.830 32 H 0.070 0.930 33 H 0.091 0.909 34 H 0.076 0.924 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.037 0.963 38 H 0.047 0.953 39 H 0.049 0.951 40 H 0.383 0.617 41 H 0.255 0.745 42 H 0.069 0.931 43 H 0.088 0.912 44 H 0.077 0.923 45 H 0.085 0.915 46 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.491 -10.698 -17.027 21.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.220 6.220 3 C 0.050 3.950 4 C -0.493 4.493 5 S 0.516 5.484 6 C -0.353 4.353 7 C 0.377 3.623 8 O -0.409 6.409 9 N -0.329 5.329 10 C -0.008 4.008 11 C -0.168 4.168 12 C -0.110 4.110 13 C 0.068 3.932 14 H 0.064 0.936 15 C -0.227 4.227 16 N -0.367 5.367 17 C -0.367 4.367 18 H 0.086 0.914 19 C -0.210 4.210 20 N -0.584 5.584 21 Si 0.736 3.264 22 H -0.213 1.213 23 H -0.218 1.218 24 H -0.214 1.214 25 C -0.164 4.164 26 C -0.032 4.032 27 C -0.113 4.113 28 H 0.072 0.928 29 H 0.119 0.881 30 H 0.074 0.926 31 H 0.188 0.812 32 H 0.088 0.912 33 H 0.109 0.891 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.091 0.909 37 H 0.056 0.944 38 H 0.066 0.934 39 H 0.069 0.931 40 H 0.218 0.782 41 H 0.065 0.935 42 H 0.088 0.912 43 H 0.106 0.894 44 H 0.095 0.905 45 H 0.103 0.897 46 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -6.146 -9.508 -17.266 20.647 hybrid contribution -0.411 -0.992 1.025 1.485 sum -6.557 -10.500 -16.241 20.421 Atomic orbital electron populations 1.23044 0.78180 1.03989 1.01340 1.86113 1.21304 1.25210 1.89422 1.17502 0.91436 0.84749 1.01315 1.25198 1.06026 0.98057 1.20044 1.83182 0.91708 1.05853 1.67674 1.24371 0.98133 0.97688 1.15119 1.16911 0.85482 0.79441 0.80479 1.90831 1.53446 1.56450 1.40204 1.48023 1.09734 1.35645 1.39536 1.21702 0.80311 1.00739 0.98016 1.22032 0.99673 1.01509 0.93539 1.21407 0.93951 0.98952 0.96670 1.20186 0.94321 0.90636 0.88014 0.93579 1.22535 1.00392 0.98992 1.00805 1.42479 1.11701 1.59348 1.23130 1.19202 0.96056 1.24124 0.97315 0.91355 1.24703 0.95954 1.01217 0.99125 1.69636 1.05062 1.44331 1.39332 0.86298 0.77403 0.78926 0.83743 1.21345 1.21758 1.21375 1.21958 0.97792 1.02586 0.94058 1.22281 0.91849 0.97598 0.91473 1.19815 0.92989 0.96442 1.02052 0.92795 0.88134 0.92605 0.81208 0.91176 0.89062 0.90525 0.91078 0.90921 0.94380 0.93358 0.93148 0.78203 0.93544 0.91212 0.89356 0.90516 0.89721 0.82446 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.93 101.05 1.00 1.19 16 2 O -0.31 -3.22 10.56 -20.42 -0.22 -3.43 16 3 C 0.11 1.18 6.61 -41.23 -0.27 0.91 16 4 C -0.36 -3.39 9.81 29.27 0.29 -3.10 16 5 S 0.25 2.44 19.90 -107.50 -2.14 0.30 16 6 C -0.23 -2.87 5.48 -36.78 -0.20 -3.08 16 7 C 0.59 8.35 7.53 -12.92 -0.10 8.25 16 8 O -0.53 -8.98 16.52 5.17 0.09 -8.90 16 9 N -0.60 -7.66 2.97 -174.36 -0.52 -8.18 16 10 C 0.11 1.38 6.42 -3.71 -0.02 1.36 16 11 C -0.13 -1.63 4.97 -26.61 -0.13 -1.76 16 12 C -0.09 -1.36 2.14 -90.58 -0.19 -1.55 16 13 C 0.18 3.33 2.72 -67.93 -0.18 3.15 16 14 H 0.05 0.90 8.08 -51.93 -0.42 0.48 16 15 C -0.17 -2.94 8.79 37.16 0.33 -2.62 16 16 N -0.72 -17.23 5.04 -53.43 -0.27 -17.50 16 17 C -0.24 -6.37 9.93 -15.06 -0.15 -6.51 16 18 H 0.07 1.81 7.83 -52.48 -0.41 1.40 16 19 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 20 N -0.93 -27.44 13.06 55.49 0.72 -26.72 16 21 Si 0.91 22.09 29.55 -169.99 -5.02 17.07 16 22 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 23 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 24 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 25 C -0.13 -1.81 4.81 -26.61 -0.13 -1.93 16 26 C 0.09 1.11 5.89 -3.71 -0.02 1.08 16 27 C -0.08 -0.95 10.23 -40.31 -0.41 -1.36 16 28 H 0.05 0.29 7.84 -51.93 -0.41 -0.12 16 29 H 0.10 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.06 0.32 7.84 -51.93 -0.41 -0.09 16 31 H 0.17 1.22 6.96 -52.49 -0.37 0.85 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.09 1.14 7.03 -51.93 -0.37 0.78 16 34 H 0.08 0.89 8.14 -51.92 -0.42 0.46 16 35 H 0.07 0.94 6.51 -51.93 -0.34 0.60 16 36 H 0.07 1.14 8.14 -51.93 -0.42 0.71 16 37 H 0.04 0.57 6.46 -51.93 -0.34 0.23 16 38 H 0.05 0.86 6.46 -51.93 -0.34 0.52 16 39 H 0.05 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.38 9.51 6.04 -40.82 -0.25 9.26 16 41 H 0.25 7.30 8.31 -40.82 -0.34 6.96 16 42 H 0.07 1.04 6.51 -51.93 -0.34 0.70 16 43 H 0.09 1.44 6.46 -51.93 -0.34 1.10 16 44 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 45 H 0.09 0.95 4.00 -30.28 -0.12 0.83 16 46 H 0.16 1.83 8.06 -52.48 -0.42 1.41 16 LS Contribution 372.93 15.07 5.62 5.62 Total: -1.00 -32.02 372.93 -8.55 -40.57 By element: Atomic # 1 Polarization: 14.15 SS G_CDS: -6.52 Total: 7.63 kcal Atomic # 6 Polarization: -6.17 SS G_CDS: -0.30 Total: -6.46 kcal Atomic # 7 Polarization: -52.33 SS G_CDS: -0.06 Total: -52.39 kcal Atomic # 8 Polarization: -12.20 SS G_CDS: -0.13 Total: -12.33 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Atomic # 16 Polarization: 2.44 SS G_CDS: -2.14 Total: 0.30 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -32.02 -8.55 -40.57 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317674415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.784 kcal (2) G-P(sol) polarization free energy of solvation -32.018 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.234 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.571 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.786 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds