Wall clock time and date at job start Tue Mar 31 2020 20:18:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42908 * 1 3 3 C 1.36212 * 116.99414 * 2 1 4 4 C 1.34083 * 122.50151 * 0.02562 * 3 2 1 5 5 S 1.70601 * 110.96966 * 179.72327 * 4 3 2 6 6 C 1.75813 * 91.62573 * 0.32654 * 5 4 3 7 7 C 1.46539 * 125.42874 * 179.97438 * 6 5 4 8 8 O 1.21716 * 120.00111 * 225.33600 * 7 6 5 9 9 N 1.34771 * 119.99982 * 45.33358 * 7 6 5 10 10 C 1.46926 * 120.63170 * 176.38586 * 9 7 6 11 11 C 1.53190 * 108.77742 * 233.63252 * 10 9 7 12 12 C 1.53045 * 109.31150 * 305.36432 * 11 10 9 13 13 C 1.52996 * 109.45822 * 181.38605 * 12 11 10 14 14 H 1.09004 * 109.47270 * 59.97843 * 13 12 11 15 15 C 1.52999 * 109.47410 * 299.97052 * 13 12 11 16 16 N 1.46502 * 109.47037 * 179.97438 * 13 12 11 17 17 C 1.36938 * 120.00377 * 204.99932 * 16 13 12 18 18 H 1.08004 * 119.99521 * 0.02562 * 17 16 13 19 19 C 1.38808 * 120.00165 * 180.02562 * 17 16 13 20 20 N 1.31618 * 120.00071 * 0.02562 * 19 17 16 21 21 Si 1.86803 * 119.99957 * 179.97438 * 19 17 16 22 22 H 1.48505 * 109.46910 * 59.99969 * 21 19 17 23 23 H 1.48504 * 109.46875 * 179.97438 * 21 19 17 24 24 H 1.48496 * 109.47279 * 299.99876 * 21 19 17 25 25 C 1.53042 * 109.52633 * 61.37059 * 12 11 10 26 26 C 1.46922 * 120.63127 * 356.40960 * 9 7 6 27 27 C 1.36745 * 109.13961 * 359.68045 * 6 5 4 28 28 H 1.08996 * 109.46843 * 60.00321 * 1 2 3 29 29 H 1.09003 * 109.46827 * 179.97438 * 1 2 3 30 30 H 1.08990 * 109.47647 * 299.99619 * 1 2 3 31 31 H 1.07996 * 124.51300 * 0.02562 * 4 3 2 32 32 H 1.09006 * 109.58605 * 113.84508 * 10 9 7 33 33 H 1.09002 * 109.70177 * 353.49052 * 10 9 7 34 34 H 1.09008 * 109.49624 * 185.41552 * 11 10 9 35 35 H 1.08998 * 109.52361 * 65.33279 * 11 10 9 36 36 H 1.09007 * 109.45828 * 301.36115 * 12 11 10 37 37 H 1.09002 * 109.46757 * 60.00064 * 15 13 12 38 38 H 1.08998 * 109.46904 * 300.00391 * 15 13 12 39 39 H 1.08995 * 109.47056 * 180.02562 * 15 13 12 40 40 H 0.96996 * 119.99978 * 25.00230 * 16 13 12 41 41 H 0.97003 * 119.99856 * 180.02562 * 20 19 17 42 42 H 1.08996 * 109.49513 * 58.58039 * 25 12 11 43 43 H 1.08999 * 109.49596 * 178.67543 * 25 12 11 44 44 H 1.09002 * 109.59017 * 246.15767 * 26 9 7 45 45 H 1.08998 * 109.59080 * 6.44029 * 26 9 7 46 46 H 1.08005 * 123.36410 * 180.24582 * 27 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3667 2.3690 0.0005 5 16 2.4293 3.7036 0.0080 6 6 3.8353 2.6480 0.0005 7 6 5.2315 3.0929 0.0018 8 8 6.0356 2.5760 -0.7517 9 7 5.6253 4.0743 0.8372 10 6 7.0366 4.4769 0.9067 11 6 7.4970 4.4109 2.3663 12 6 6.5591 5.2558 3.2315 13 6 7.0361 5.2202 4.6848 14 1 8.0475 5.6221 4.7453 15 6 7.0304 3.7754 5.1882 16 7 6.1387 6.0294 5.5132 17 6 6.5933 6.5741 6.6845 18 1 7.6136 6.4076 6.9973 19 6 5.7429 7.3404 7.4696 20 7 4.4995 7.5430 7.0886 21 14 6.3629 8.0829 9.0677 22 1 7.5030 8.9907 8.7822 23 1 5.2686 8.8514 9.7137 24 1 6.8101 6.9976 9.9771 25 6 5.1388 4.6922 3.1470 26 6 4.6516 4.7617 1.6963 27 6 3.4182 1.3457 -0.0001 28 1 -0.3633 0.5138 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3634 0.5137 0.8899 31 1 0.2894 2.4445 0.0013 32 1 7.1446 5.4960 0.5352 33 1 7.6416 3.8015 0.3018 34 1 8.5128 4.7986 2.4453 35 1 7.4748 3.3764 2.7088 36 1 6.5632 6.2852 2.8730 37 1 7.6980 3.1733 4.5719 38 1 6.0190 3.3736 5.1278 39 1 7.3698 3.7501 6.2237 40 1 5.2226 6.1792 5.2321 41 1 3.9054 8.0788 7.6371 42 1 5.1385 3.6549 3.4818 43 1 4.4758 5.2800 3.7819 44 1 4.5650 5.8040 1.3893 45 1 3.6806 4.2738 1.6111 46 1 4.0961 0.5049 -0.0004 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001317674415.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:18:54 Heat of formation + Delta-G solvation = -42.549053 kcal Electronic energy + Delta-G solvation = -27329.311354 eV Core-core repulsion = 23538.735285 eV Total energy + Delta-G solvation = -3790.576069 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -41.48649 -40.69856 -39.32210 -36.96616 -36.77646 -34.68252 -32.73720 -31.98967 -30.58015 -29.72569 -28.76650 -26.88079 -25.98910 -24.93669 -24.31965 -22.97751 -21.67659 -20.42195 -20.05165 -19.32262 -19.04684 -18.11224 -17.56884 -16.98744 -16.77231 -16.64537 -16.31436 -15.93531 -15.56197 -15.44317 -15.24694 -15.17626 -14.66662 -14.37169 -14.23622 -13.86514 -13.82356 -13.67958 -13.60249 -13.08499 -13.00552 -12.87877 -12.74713 -12.65430 -12.60172 -12.20504 -12.04112 -12.01963 -11.85337 -11.73796 -11.59353 -11.35332 -11.16986 -10.99863 -10.84275 -10.03648 -9.72398 -8.95466 -8.93285 -7.89277 -5.15309 -0.55029 0.26729 0.82770 1.34607 1.49430 1.50991 1.56870 1.64341 2.00635 2.44871 2.59785 3.39972 3.44044 3.75275 3.81647 3.89994 3.94055 4.09151 4.11923 4.26721 4.30177 4.37630 4.38539 4.40822 4.52599 4.56977 4.66763 4.72197 4.74454 4.77831 4.79990 4.87562 4.93828 4.98435 5.02895 5.09371 5.14842 5.27768 5.34250 5.42364 5.52551 5.59417 5.73053 6.18906 6.25505 6.34457 6.90390 7.41048 8.19629 8.42904 9.33939 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.014307 B = 0.002789 C = 0.002518 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1956.554649 B =10038.178629 C =11118.092392 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.327 6.327 3 C 0.091 3.909 4 C -0.345 4.345 5 S 0.288 5.712 6 C -0.261 4.261 7 C 0.590 3.410 8 O -0.566 6.566 9 N -0.595 5.595 10 C 0.114 3.886 11 C -0.119 4.119 12 C -0.081 4.081 13 C 0.173 3.827 14 H 0.041 0.959 15 C -0.157 4.157 16 N -0.734 5.734 17 C -0.235 4.235 18 H 0.070 0.930 19 C -0.074 4.074 20 N -0.967 5.967 21 Si 0.965 3.035 22 H -0.280 1.280 23 H -0.297 1.297 24 H -0.283 1.283 25 C -0.120 4.120 26 C 0.097 3.903 27 C -0.087 4.087 28 H 0.066 0.934 29 H 0.118 0.882 30 H 0.063 0.937 31 H 0.197 0.803 32 H 0.086 0.914 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.067 0.933 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.043 0.957 39 H 0.028 0.972 40 H 0.376 0.624 41 H 0.249 0.751 42 H 0.063 0.937 43 H 0.068 0.932 44 H 0.091 0.909 45 H 0.095 0.905 46 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.924 -10.704 -17.714 21.825 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.242 6.242 3 C 0.035 3.965 4 C -0.482 4.482 5 S 0.555 5.445 6 C -0.381 4.381 7 C 0.378 3.622 8 O -0.447 6.447 9 N -0.326 5.326 10 C -0.007 4.007 11 C -0.157 4.157 12 C -0.100 4.100 13 C 0.065 3.935 14 H 0.059 0.941 15 C -0.217 4.217 16 N -0.376 5.376 17 C -0.367 4.367 18 H 0.088 0.912 19 C -0.266 4.266 20 N -0.618 5.618 21 Si 0.795 3.205 22 H -0.206 1.206 23 H -0.223 1.223 24 H -0.209 1.209 25 C -0.158 4.158 26 C -0.026 4.026 27 C -0.123 4.123 28 H 0.084 0.916 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.214 0.786 32 H 0.105 0.895 33 H 0.107 0.893 34 H 0.110 0.890 35 H 0.085 0.915 36 H 0.087 0.913 37 H 0.085 0.915 38 H 0.062 0.938 39 H 0.048 0.952 40 H 0.210 0.790 41 H 0.058 0.942 42 H 0.082 0.918 43 H 0.086 0.914 44 H 0.110 0.890 45 H 0.112 0.888 46 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -6.550 -9.525 -17.959 21.357 hybrid contribution -0.302 -1.049 1.206 1.626 sum -6.852 -10.573 -16.753 20.962 Atomic orbital electron populations 1.23337 0.76169 1.05616 1.02279 1.86090 1.23439 1.25078 1.89543 1.17506 0.91177 0.85565 1.02268 1.25536 1.07333 0.97400 1.17961 1.82989 0.90092 1.04917 1.66521 1.24289 0.98273 0.98576 1.17002 1.17134 0.85978 0.79058 0.80029 1.90802 1.54636 1.57606 1.41681 1.48077 1.10156 1.35290 1.39075 1.21755 0.79930 1.01613 0.97425 1.21946 0.99825 1.00674 0.93298 1.21265 0.94820 0.99437 0.94467 1.20406 0.93230 0.90303 0.89607 0.94081 1.22392 1.00783 0.98556 0.99973 1.42665 1.12093 1.59859 1.22965 1.19552 0.96004 1.23070 0.98095 0.91175 1.25418 0.96333 1.02604 1.02280 1.69777 1.06061 1.45554 1.40420 0.85338 0.76738 0.78126 0.80319 1.20618 1.22315 1.20924 1.21840 0.97069 1.01619 0.95281 1.22271 0.92033 0.98519 0.89755 1.19915 0.93828 0.96355 1.02176 0.91555 0.86374 0.91826 0.78623 0.89544 0.89282 0.88985 0.91464 0.91258 0.91466 0.93776 0.95244 0.79048 0.94176 0.91820 0.91381 0.89042 0.88765 0.83140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.93 113.37 1.13 1.34 16 2 O -0.33 -6.51 10.56 -95.97 -1.01 -7.52 16 3 C 0.09 1.92 6.61 21.20 0.14 2.06 16 4 C -0.34 -5.80 9.81 66.87 0.66 -5.14 16 5 S 0.29 5.07 19.90 -56.49 -1.12 3.95 16 6 C -0.26 -6.27 5.48 24.09 0.13 -6.14 16 7 C 0.59 16.36 7.53 86.41 0.65 17.01 16 8 O -0.57 -19.18 16.52 -4.40 -0.07 -19.25 16 9 N -0.59 -14.50 2.97 -823.77 -2.45 -16.95 16 10 C 0.11 2.57 6.42 86.36 0.55 3.12 16 11 C -0.12 -2.78 4.97 30.67 0.15 -2.63 16 12 C -0.08 -2.32 2.14 -10.77 -0.02 -2.35 16 13 C 0.17 6.35 2.72 44.99 0.12 6.47 16 14 H 0.04 1.56 8.08 -2.39 -0.02 1.54 16 15 C -0.16 -5.41 8.79 71.98 0.63 -4.78 16 16 N -0.73 -35.04 5.04 -322.94 -1.63 -36.67 16 17 C -0.24 -12.70 9.93 84.03 0.83 -11.87 16 18 H 0.07 3.69 7.83 -2.91 -0.02 3.66 16 19 C -0.07 -4.16 5.50 84.86 0.47 -3.69 16 20 N -0.97 -57.42 13.06 21.65 0.28 -57.14 16 21 Si 0.96 45.54 29.55 68.60 2.03 47.57 16 22 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 23 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 24 H -0.28 -13.01 7.11 99.48 0.71 -12.30 16 25 C -0.12 -3.35 4.81 30.67 0.15 -3.20 16 26 C 0.10 2.21 5.89 86.36 0.51 2.72 16 27 C -0.09 -2.10 10.23 21.80 0.22 -1.88 16 28 H 0.07 0.54 7.84 -2.39 -0.02 0.52 16 29 H 0.12 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.06 0.58 7.84 -2.39 -0.02 0.56 16 31 H 0.20 2.16 6.96 -2.91 -0.02 2.14 16 32 H 0.09 1.69 8.14 -2.38 -0.02 1.67 16 33 H 0.09 2.11 7.03 -2.39 -0.02 2.09 16 34 H 0.09 1.90 8.14 -2.38 -0.02 1.88 16 35 H 0.07 1.64 6.51 -2.39 -0.02 1.63 16 36 H 0.07 2.07 8.14 -2.38 -0.02 2.05 16 37 H 0.07 1.91 6.46 -2.39 -0.02 1.89 16 38 H 0.04 1.54 6.46 -2.39 -0.02 1.52 16 39 H 0.03 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.38 18.91 6.04 -92.71 -0.56 18.35 16 41 H 0.25 14.48 8.31 -92.71 -0.77 13.71 16 42 H 0.06 1.85 6.51 -2.39 -0.02 1.84 16 43 H 0.07 2.21 6.46 -2.39 -0.02 2.20 16 44 H 0.09 1.86 8.14 -2.39 -0.02 1.84 16 45 H 0.09 1.98 4.00 -16.16 -0.06 1.91 16 46 H 0.15 3.65 8.06 -2.91 -0.02 3.63 16 Total: -1.00 -68.98 372.93 2.74 -66.24 By element: Atomic # 1 Polarization: 28.33 SS G_CDS: 0.39 Total: 28.72 kcal Atomic # 6 Polarization: -15.27 SS G_CDS: 6.32 Total: -8.95 kcal Atomic # 7 Polarization: -106.96 SS G_CDS: -3.79 Total: -110.76 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -1.09 Total: -26.77 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 5.07 SS G_CDS: -1.12 Total: 3.95 kcal Total: -68.98 2.74 -66.24 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001317674415.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.692 kcal (2) G-P(sol) polarization free energy of solvation -68.980 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.738 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.241 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds