Wall clock time and date at job start Tue Mar 31 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47162 * 2 1 4 4 C 1.52998 * 109.46693 * 240.00258 * 2 1 3 5 5 N 1.46907 * 109.47416 * 65.00056 * 4 2 1 6 6 C 1.46895 * 110.99903 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46889 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00012 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00077 * 180.02562 * 7 6 5 10 10 C 1.37105 * 120.00158 * 180.02562 * 9 7 6 11 11 H 1.07997 * 119.99755 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00219 * 179.97438 * 10 9 7 13 13 N 1.31413 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47088 * 59.99719 * 14 12 10 16 16 H 1.48502 * 109.47017 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46952 * 299.99567 * 14 12 10 18 18 C 1.52993 * 109.47245 * 120.00190 * 2 1 3 19 19 N 1.46495 * 109.47530 * 294.99864 * 18 2 1 20 20 C 1.34775 * 120.00324 * 180.02562 * 19 18 2 21 21 O 1.21532 * 120.00269 * 359.97438 * 20 19 18 22 22 C 1.47996 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.32808 * 119.75187 * 359.97438 * 22 20 19 24 24 C 1.31432 * 121.66838 * 180.02562 * 23 22 20 25 25 C 1.38685 * 120.98032 * 359.97438 * 24 23 22 26 26 C 1.38439 * 119.39355 * 0.27475 * 25 24 23 27 27 C 1.38969 * 118.46638 * 359.50238 * 26 25 24 28 28 F 1.35109 * 120.50270 * 180.24260 * 27 26 25 29 29 H 1.08998 * 109.47107 * 59.99476 * 1 2 3 30 30 H 1.08996 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46603 * 299.99858 * 1 2 3 32 32 H 1.09000 * 109.47085 * 184.99890 * 4 2 1 33 33 H 1.09005 * 109.47483 * 305.00190 * 4 2 1 34 34 H 1.00896 * 110.99482 * 303.95543 * 5 4 2 35 35 H 1.08999 * 109.47619 * 299.99775 * 6 5 4 36 36 H 1.09003 * 109.47251 * 60.00455 * 6 5 4 37 37 H 0.96993 * 120.00096 * 359.97438 * 9 7 6 38 38 H 0.97000 * 120.00079 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.47248 * 174.99492 * 18 2 1 40 40 H 1.09007 * 109.46748 * 54.99898 * 18 2 1 41 41 H 0.97005 * 119.99275 * 359.97438 * 19 18 2 42 42 H 1.08003 * 119.51032 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.30062 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.77043 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0375 -2.4457 6 6 2.1256 -0.6264 -3.6672 7 6 1.7085 0.1788 -4.8709 8 8 1.0777 1.2045 -4.7254 9 7 2.0355 -0.2414 -6.1090 10 6 1.6565 0.4913 -7.2040 11 1 1.0956 1.4051 -7.0745 12 6 1.9940 0.0584 -8.4804 13 7 2.6770 -1.0532 -8.6381 14 14 1.4770 1.0565 -9.9724 15 1 2.0673 2.4164 -9.8870 16 1 1.9560 0.3850 -11.2073 17 1 -0.0038 1.1610 -10.0090 18 6 2.0400 -0.7213 1.2492 19 7 1.6526 0.0352 2.4423 20 6 1.9966 -0.4132 3.6658 21 8 2.6279 -1.4455 3.7794 22 6 1.6056 0.3513 4.8712 23 7 0.9162 1.4790 4.7414 24 6 0.5500 2.1879 5.7858 25 6 0.8714 1.7821 7.0724 26 6 1.5937 0.6154 7.2563 27 6 1.9644 -0.1178 6.1355 28 9 2.6656 -1.2651 6.2677 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1262 -0.7994 -1.2057 33 1 1.6052 -1.7198 -1.2953 34 1 0.6528 0.1794 -2.4753 35 1 3.2125 -0.7036 -3.6402 36 1 1.6918 -1.6244 -3.7301 37 1 2.5396 -1.0619 -6.2253 38 1 2.9130 -1.3552 -9.5292 39 1 3.1263 -0.7996 1.2055 40 1 1.6054 -1.7199 1.2950 41 1 1.1490 0.8594 2.3517 42 1 -0.0096 3.1001 5.6400 43 1 0.5653 2.3733 7.9228 44 1 1.8596 0.2807 8.2482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319257788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:38 Heat of formation + Delta-G solvation = -83.224297 kcal Electronic energy + Delta-G solvation = -27372.778987 eV Core-core repulsion = 23046.518682 eV Total energy + Delta-G solvation = -4326.260305 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.40497 -40.96658 -39.48516 -38.36513 -37.23310 -34.94218 -33.87705 -33.36245 -32.23158 -31.54160 -31.16092 -27.39987 -27.20492 -25.46180 -24.62325 -23.99031 -23.02027 -21.17290 -20.47189 -19.26467 -18.56083 -18.13632 -17.86300 -17.66404 -16.57595 -16.46600 -16.05081 -15.75938 -15.70751 -15.39785 -14.79575 -14.60870 -14.45350 -14.34629 -14.09225 -13.84856 -13.76152 -13.67016 -13.39805 -13.02889 -12.96061 -12.75348 -12.60000 -12.03518 -11.56697 -11.52662 -11.18849 -11.04323 -10.95091 -10.88976 -10.77216 -10.63389 -10.43048 -10.20099 -10.14218 -9.66275 -9.48499 -9.29757 -8.44419 -8.04215 -7.94163 -6.40001 -3.80967 -0.09559 0.36649 2.25830 2.63006 3.17473 3.21402 3.26963 3.31378 3.41050 3.55751 3.92829 3.99391 4.08604 4.15539 4.18156 4.33220 4.65482 4.73734 4.77645 4.90423 4.98507 5.11706 5.15403 5.22855 5.27204 5.38637 5.44269 5.54495 5.62427 5.76237 5.81820 5.85662 5.88190 6.00885 6.04849 6.14991 6.22734 6.29540 6.90596 7.22397 7.22810 7.56489 7.68451 7.82248 8.07826 8.63050 9.19335 9.56094 10.07613 10.77641 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.001494 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.006370 B =18735.564148 C =19364.018548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.101 4.101 3 H 0.090 0.910 4 C 0.066 3.934 5 N -0.668 5.668 6 C 0.050 3.950 7 C 0.441 3.559 8 O -0.584 6.584 9 N -0.563 5.563 10 C -0.301 4.301 11 H 0.102 0.898 12 C 0.023 3.977 13 N -0.902 5.902 14 Si 0.931 3.069 15 H -0.273 1.273 16 H -0.284 1.284 17 H -0.274 1.274 18 C 0.123 3.877 19 N -0.703 5.703 20 C 0.566 3.434 21 O -0.522 6.522 22 C 0.047 3.953 23 N -0.431 5.431 24 C 0.089 3.911 25 C -0.119 4.119 26 C -0.119 4.119 27 C 0.111 3.889 28 F -0.104 7.104 29 H 0.068 0.932 30 H 0.054 0.946 31 H 0.055 0.945 32 H 0.074 0.926 33 H 0.031 0.969 34 H 0.349 0.651 35 H 0.086 0.914 36 H 0.043 0.957 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.073 0.927 40 H 0.072 0.928 41 H 0.412 0.588 42 H 0.173 0.827 43 H 0.153 0.847 44 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.330 2.145 32.663 32.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.121 4.121 3 H 0.109 0.891 4 C -0.064 4.064 5 N -0.302 5.302 6 C -0.082 4.082 7 C 0.226 3.774 8 O -0.468 6.468 9 N -0.200 5.200 10 C -0.430 4.430 11 H 0.120 0.880 12 C -0.179 4.179 13 N -0.543 5.543 14 Si 0.758 3.242 15 H -0.199 1.199 16 H -0.210 1.210 17 H -0.199 1.199 18 C -0.001 4.001 19 N -0.355 5.355 20 C 0.350 3.650 21 O -0.397 6.397 22 C -0.092 4.092 23 N -0.142 5.142 24 C -0.072 4.072 25 C -0.139 4.139 26 C -0.145 4.145 27 C 0.088 3.912 28 F -0.082 7.082 29 H 0.087 0.913 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.093 0.907 33 H 0.049 0.951 34 H 0.170 0.830 35 H 0.105 0.895 36 H 0.061 0.939 37 H 0.226 0.774 38 H 0.082 0.918 39 H 0.092 0.908 40 H 0.090 0.910 41 H 0.249 0.751 42 H 0.190 0.810 43 H 0.170 0.830 44 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -2.868 2.608 31.778 32.014 hybrid contribution -0.390 -0.877 -0.017 0.960 sum -3.257 1.731 31.761 31.974 Atomic orbital electron populations 1.21910 0.94660 1.02058 1.02439 1.21362 0.96559 1.01262 0.92876 0.89123 1.21880 1.00806 0.94406 0.89296 1.60081 1.21047 1.49050 1.00000 1.21670 1.01199 0.95374 0.90001 1.19816 0.85613 0.87920 0.84040 1.90516 1.44343 1.26253 1.85721 1.41858 1.49514 1.24227 1.04416 1.19661 1.32955 1.06768 0.83635 0.87971 1.25260 0.96901 0.96649 0.99101 1.69606 1.38788 1.21766 1.24150 0.85911 0.78990 0.79430 0.79836 1.19891 1.20989 1.19943 1.21483 1.00536 0.95280 0.82755 1.45796 1.56629 1.28055 1.05001 1.17642 0.80156 0.84492 0.82757 1.90874 1.39397 1.23232 1.86179 1.21415 1.00395 0.94684 0.92749 1.67642 1.07952 1.03663 1.34963 1.22962 0.97476 0.99211 0.87526 1.22357 0.96228 0.95692 0.99628 1.21767 0.98555 0.95284 0.98916 1.18682 0.94049 0.84554 0.93948 1.91645 1.74890 1.45345 1.96341 0.91348 0.92657 0.92578 0.90720 0.95132 0.83039 0.89543 0.93858 0.77442 0.91830 0.90827 0.91016 0.75124 0.80968 0.82978 0.82656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.47 8.84 37.16 0.33 -1.14 16 2 C -0.10 -1.02 2.63 -90.62 -0.24 -1.26 16 3 H 0.09 0.98 8.14 -51.93 -0.42 0.55 16 4 C 0.07 0.79 5.14 -3.82 -0.02 0.77 16 5 N -0.67 -10.66 6.12 -115.05 -0.70 -11.36 16 6 C 0.05 0.89 6.17 -4.98 -0.03 0.86 16 7 C 0.44 10.49 7.82 -10.99 -0.09 10.40 16 8 O -0.58 -15.93 15.78 5.55 0.09 -15.84 16 9 N -0.56 -14.41 5.29 -10.96 -0.06 -14.47 16 10 C -0.30 -8.45 9.68 -14.93 -0.14 -8.59 16 11 H 0.10 3.00 7.16 -52.49 -0.38 2.62 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.51 16 13 N -0.90 -24.66 13.05 55.50 0.72 -23.94 16 14 Si 0.93 21.15 29.55 -169.99 -5.02 16.12 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 17 H -0.27 -6.17 7.11 56.52 0.40 -5.77 16 18 C 0.12 1.23 5.06 -4.05 -0.02 1.21 16 19 N -0.70 -6.96 5.27 -61.21 -0.32 -7.28 16 20 C 0.57 6.69 7.81 -12.26 -0.10 6.59 16 21 O -0.52 -7.83 15.32 5.34 0.08 -7.74 16 22 C 0.05 0.46 6.75 -82.96 -0.56 -0.10 16 23 N -0.43 -3.39 9.54 -9.76 -0.09 -3.48 16 24 C 0.09 0.41 11.18 -17.56 -0.20 0.21 16 25 C -0.12 -0.38 10.11 -39.34 -0.40 -0.78 16 26 C -0.12 -0.59 10.16 -39.24 -0.40 -0.99 16 27 C 0.11 0.98 7.32 -38.82 -0.28 0.70 16 28 F -0.10 -1.16 15.55 2.25 0.04 -1.13 16 29 H 0.07 0.74 6.68 -51.93 -0.35 0.39 16 30 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.47 7.18 -51.93 -0.37 0.10 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.35 5.71 6.68 -39.29 -0.26 5.44 16 35 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 36 H 0.04 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 38 H 0.27 7.05 8.31 -40.82 -0.34 6.71 16 39 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 40 H 0.07 0.74 8.14 -51.92 -0.42 0.32 16 41 H 0.41 3.53 6.98 -40.82 -0.28 3.24 16 42 H 0.17 0.26 8.06 -52.48 -0.42 -0.16 16 43 H 0.15 -0.03 8.06 -52.49 -0.42 -0.46 16 44 H 0.16 0.38 8.06 -52.48 -0.42 -0.05 16 LS Contribution 381.15 15.07 5.74 5.74 Total: -1.00 -34.85 381.15 -7.52 -42.37 By element: Atomic # 1 Polarization: 18.37 SS G_CDS: -5.75 Total: 12.62 kcal Atomic # 6 Polarization: 10.62 SS G_CDS: -2.24 Total: 8.38 kcal Atomic # 7 Polarization: -60.07 SS G_CDS: -0.45 Total: -60.53 kcal Atomic # 8 Polarization: -23.75 SS G_CDS: 0.17 Total: -23.58 kcal Atomic # 9 Polarization: -1.16 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.74 Total: 5.74 kcal Total: -34.85 -7.52 -42.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319257788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.853 kcal (2) G-P(sol) polarization free energy of solvation -34.850 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.520 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.224 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds