Wall clock time and date at job start Tue Mar 31 2020 20:50:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08996 * 109.47162 * 2 1 4 4 C 1.52998 * 109.46693 * 240.00258 * 2 1 3 5 5 N 1.46907 * 109.47416 * 65.00056 * 4 2 1 6 6 C 1.46895 * 110.99903 * 179.97438 * 5 4 2 7 7 C 1.50699 * 109.46889 * 179.97438 * 6 5 4 8 8 O 1.21293 * 120.00012 * 359.97438 * 7 6 5 9 9 N 1.34776 * 120.00077 * 180.02562 * 7 6 5 10 10 C 1.37105 * 120.00158 * 180.02562 * 9 7 6 11 11 H 1.07997 * 119.99755 * 359.97438 * 10 9 7 12 12 C 1.38945 * 120.00219 * 179.97438 * 10 9 7 13 13 N 1.31413 * 120.00099 * 359.97438 * 12 10 9 14 14 Si 1.86801 * 120.00059 * 179.97438 * 12 10 9 15 15 H 1.48490 * 109.47088 * 59.99719 * 14 12 10 16 16 H 1.48502 * 109.47017 * 180.02562 * 14 12 10 17 17 H 1.48497 * 109.46952 * 299.99567 * 14 12 10 18 18 C 1.52993 * 109.47245 * 120.00190 * 2 1 3 19 19 N 1.46495 * 109.47530 * 294.99864 * 18 2 1 20 20 C 1.34775 * 120.00324 * 180.02562 * 19 18 2 21 21 O 1.21532 * 120.00269 * 359.97438 * 20 19 18 22 22 C 1.47996 * 120.00028 * 179.97438 * 20 19 18 23 23 N 1.32808 * 119.75187 * 359.97438 * 22 20 19 24 24 C 1.31432 * 121.66838 * 180.02562 * 23 22 20 25 25 C 1.38685 * 120.98032 * 359.97438 * 24 23 22 26 26 C 1.38439 * 119.39355 * 0.27475 * 25 24 23 27 27 C 1.38969 * 118.46638 * 359.50238 * 26 25 24 28 28 F 1.35109 * 120.50270 * 180.24260 * 27 26 25 29 29 H 1.08998 * 109.47107 * 59.99476 * 1 2 3 30 30 H 1.08996 * 109.47162 * 179.97438 * 1 2 3 31 31 H 1.09003 * 109.46603 * 299.99858 * 1 2 3 32 32 H 1.09000 * 109.47085 * 184.99890 * 4 2 1 33 33 H 1.09005 * 109.47483 * 305.00190 * 4 2 1 34 34 H 1.00896 * 110.99482 * 303.95543 * 5 4 2 35 35 H 1.08999 * 109.47619 * 299.99775 * 6 5 4 36 36 H 1.09003 * 109.47251 * 60.00455 * 6 5 4 37 37 H 0.96993 * 120.00096 * 359.97438 * 9 7 6 38 38 H 0.97000 * 120.00079 * 180.02562 * 13 12 10 39 39 H 1.09000 * 109.47248 * 174.99492 * 18 2 1 40 40 H 1.09007 * 109.46748 * 54.99898 * 18 2 1 41 41 H 0.97005 * 119.99275 * 359.97438 * 19 18 2 42 42 H 1.08003 * 119.51032 * 179.97438 * 24 23 22 43 43 H 1.08002 * 120.30062 * 179.97438 * 25 24 23 44 44 H 1.08003 * 120.77043 * 179.74931 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0399 -0.7212 -1.2493 5 7 1.6513 0.0375 -2.4457 6 6 2.1256 -0.6264 -3.6672 7 6 1.7085 0.1788 -4.8709 8 8 1.0777 1.2045 -4.7254 9 7 2.0355 -0.2414 -6.1090 10 6 1.6565 0.4913 -7.2040 11 1 1.0956 1.4051 -7.0745 12 6 1.9940 0.0584 -8.4804 13 7 2.6770 -1.0532 -8.6381 14 14 1.4770 1.0565 -9.9724 15 1 2.0673 2.4164 -9.8870 16 1 1.9560 0.3850 -11.2073 17 1 -0.0038 1.1610 -10.0090 18 6 2.0400 -0.7213 1.2492 19 7 1.6526 0.0352 2.4423 20 6 1.9966 -0.4132 3.6658 21 8 2.6279 -1.4455 3.7794 22 6 1.6056 0.3513 4.8712 23 7 0.9162 1.4790 4.7414 24 6 0.5500 2.1879 5.7858 25 6 0.8714 1.7821 7.0724 26 6 1.5937 0.6154 7.2563 27 6 1.9644 -0.1178 6.1355 28 9 2.6656 -1.2651 6.2677 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3633 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 3.1262 -0.7994 -1.2057 33 1 1.6052 -1.7198 -1.2953 34 1 0.6528 0.1794 -2.4753 35 1 3.2125 -0.7036 -3.6402 36 1 1.6918 -1.6244 -3.7301 37 1 2.5396 -1.0619 -6.2253 38 1 2.9130 -1.3552 -9.5292 39 1 3.1263 -0.7996 1.2055 40 1 1.6054 -1.7199 1.2950 41 1 1.1490 0.8594 2.3517 42 1 -0.0096 3.1001 5.6400 43 1 0.5653 2.3733 7.9228 44 1 1.8596 0.2807 8.2482 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319257788.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:50:38 Heat of formation + Delta-G solvation = -110.807522 kcal Electronic energy + Delta-G solvation = -27373.975085 eV Core-core repulsion = 23046.518682 eV Total energy + Delta-G solvation = -4327.456403 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -50.08270 -41.56823 -40.28608 -40.09047 -38.34694 -36.21959 -35.69871 -33.98310 -33.31489 -33.01545 -32.07683 -28.82721 -27.99855 -26.72785 -25.71263 -24.66352 -24.07557 -21.96507 -21.41191 -21.01280 -19.91878 -19.25244 -18.71661 -18.21990 -17.90426 -17.25414 -17.14420 -16.77097 -16.63622 -16.44460 -16.30454 -15.95395 -15.56057 -15.34731 -15.18991 -14.93597 -14.66364 -14.46755 -14.27959 -14.17399 -13.94010 -13.59247 -13.50304 -13.44817 -13.34443 -13.07888 -12.79036 -12.42923 -12.14065 -12.09556 -11.87317 -11.78749 -11.53912 -11.49563 -11.03802 -10.74835 -10.34771 -10.32935 -10.02797 -10.01411 -9.32274 -8.46000 -5.95134 -0.61765 -0.04314 1.40606 1.42357 1.53498 1.56986 1.88868 2.05577 2.29974 2.62170 2.84942 2.95587 3.05572 3.21194 3.52947 3.59781 3.63158 3.87376 3.87860 3.90752 3.97892 4.33014 4.35115 4.46966 4.50938 4.53952 4.55689 4.58454 4.71184 4.78475 4.80265 4.91703 4.92720 4.99778 5.19072 5.31028 5.39023 5.41132 5.47962 5.88734 6.10167 6.26962 6.42411 6.60217 6.60469 7.00838 7.12658 7.56447 8.11548 8.71089 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.034817 B = 0.001494 C = 0.001446 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 804.006370 B =18735.564148 C =19364.018548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.088 4.088 3 H 0.085 0.915 4 C 0.067 3.933 5 N -0.681 5.681 6 C 0.063 3.937 7 C 0.437 3.563 8 O -0.623 6.623 9 N -0.573 5.573 10 C -0.337 4.337 11 H 0.080 0.920 12 C -0.013 4.013 13 N -0.920 5.920 14 Si 0.994 3.006 15 H -0.272 1.272 16 H -0.271 1.271 17 H -0.271 1.271 18 C 0.129 3.871 19 N -0.694 5.694 20 C 0.559 3.441 21 O -0.565 6.565 22 C 0.018 3.982 23 N -0.449 5.449 24 C 0.088 3.912 25 C -0.094 4.094 26 C -0.114 4.114 27 C 0.082 3.918 28 F -0.128 7.128 29 H 0.056 0.944 30 H 0.058 0.942 31 H 0.068 0.932 32 H 0.080 0.920 33 H 0.043 0.957 34 H 0.345 0.655 35 H 0.104 0.896 36 H 0.066 0.934 37 H 0.396 0.604 38 H 0.278 0.722 39 H 0.068 0.932 40 H 0.069 0.931 41 H 0.419 0.581 42 H 0.208 0.792 43 H 0.199 0.801 44 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.115 3.286 34.367 34.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.107 4.107 3 H 0.104 0.896 4 C -0.062 4.062 5 N -0.315 5.315 6 C -0.069 4.069 7 C 0.225 3.775 8 O -0.509 6.509 9 N -0.210 5.210 10 C -0.466 4.466 11 H 0.098 0.902 12 C -0.212 4.212 13 N -0.561 5.561 14 Si 0.818 3.182 15 H -0.197 1.197 16 H -0.195 1.195 17 H -0.196 1.196 18 C 0.005 3.995 19 N -0.345 5.345 20 C 0.345 3.655 21 O -0.444 6.444 22 C -0.119 4.119 23 N -0.160 5.160 24 C -0.073 4.073 25 C -0.114 4.114 26 C -0.140 4.140 27 C 0.059 3.941 28 F -0.106 7.106 29 H 0.075 0.925 30 H 0.077 0.923 31 H 0.086 0.914 32 H 0.099 0.901 33 H 0.061 0.939 34 H 0.165 0.835 35 H 0.122 0.878 36 H 0.084 0.916 37 H 0.230 0.770 38 H 0.087 0.913 39 H 0.086 0.914 40 H 0.088 0.912 41 H 0.257 0.743 42 H 0.224 0.776 43 H 0.216 0.784 44 H 0.200 0.800 Dipole moment (debyes) X Y Z Total from point charges -3.647 3.738 33.484 33.889 hybrid contribution -0.204 -1.127 -0.412 1.218 sum -3.851 2.611 33.071 33.397 Atomic orbital electron populations 1.21876 0.94114 1.02309 1.02429 1.21200 0.96857 1.00645 0.92033 0.89629 1.21952 1.01317 0.94732 0.88225 1.60077 1.20877 1.50075 1.00445 1.21540 1.02252 0.95130 0.87971 1.20875 0.83979 0.87649 0.85028 1.90483 1.45791 1.28184 1.86480 1.41932 1.50017 1.24334 1.04731 1.19659 1.34555 1.07086 0.85319 0.90231 1.26053 0.96388 0.97572 1.01230 1.69670 1.38815 1.22502 1.25111 0.84972 0.78637 0.77993 0.76626 1.19733 1.19505 1.19636 1.21375 1.00178 0.95184 0.82748 1.45735 1.56138 1.28065 1.04607 1.18091 0.79439 0.84188 0.83794 1.90831 1.41509 1.25179 1.86907 1.21108 1.02789 0.95975 0.92064 1.67618 1.08354 1.03360 1.36691 1.23706 0.96524 0.99550 0.87520 1.22886 0.93463 0.94512 1.00498 1.22159 0.97874 0.95216 0.98765 1.19114 0.95142 0.84704 0.95139 1.91576 1.75737 1.46828 1.96474 0.92535 0.92293 0.91351 0.90120 0.93876 0.83456 0.87814 0.91578 0.76979 0.91298 0.91369 0.91243 0.74306 0.77572 0.78398 0.80035 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.77 8.84 71.98 0.64 -2.14 16 2 C -0.09 -1.73 2.63 -10.80 -0.03 -1.76 16 3 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 4 C 0.07 1.53 5.14 86.30 0.44 1.97 16 5 N -0.68 -21.25 6.12 -517.92 -3.17 -24.42 16 6 C 0.06 2.19 6.17 85.56 0.53 2.72 16 7 C 0.44 21.01 7.82 87.66 0.69 21.70 16 8 O -0.62 -34.71 15.78 -3.07 -0.05 -34.76 16 9 N -0.57 -29.73 5.29 -306.98 -1.62 -31.35 16 10 C -0.34 -19.30 9.68 84.04 0.81 -18.49 16 11 H 0.08 4.84 7.16 -2.91 -0.02 4.82 16 12 C -0.01 -0.68 5.50 84.93 0.47 -0.21 16 13 N -0.92 -50.01 13.05 21.66 0.28 -49.73 16 14 Si 0.99 43.13 29.55 68.60 2.03 45.16 16 15 H -0.27 -11.68 7.11 99.48 0.71 -10.98 16 16 H -0.27 -11.05 7.11 99.48 0.71 -10.34 16 17 H -0.27 -11.58 7.11 99.48 0.71 -10.87 16 18 C 0.13 2.58 5.06 86.38 0.44 3.01 16 19 N -0.69 -13.99 5.27 -465.84 -2.46 -16.44 16 20 C 0.56 13.89 7.81 86.83 0.68 14.57 16 21 O -0.57 -18.11 15.32 -3.82 -0.06 -18.17 16 22 C 0.02 0.35 6.75 41.90 0.28 0.64 16 23 N -0.45 -6.53 9.54 -184.79 -1.76 -8.29 16 24 C 0.09 0.53 11.18 84.86 0.95 1.48 16 25 C -0.09 -0.22 10.11 22.42 0.23 0.01 16 26 C -0.11 -0.88 10.16 22.49 0.23 -0.65 16 27 C 0.08 1.46 7.32 22.76 0.17 1.63 16 28 F -0.13 -3.05 15.55 44.97 0.70 -2.35 16 29 H 0.06 1.20 6.68 -2.39 -0.02 1.18 16 30 H 0.06 1.05 8.14 -2.39 -0.02 1.03 16 31 H 0.07 1.08 7.18 -2.39 -0.02 1.07 16 32 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.04 0.90 8.14 -2.38 -0.02 0.88 16 34 H 0.35 11.21 6.68 -89.70 -0.60 10.61 16 35 H 0.10 3.26 8.14 -2.39 -0.02 3.24 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.40 19.53 7.90 -92.71 -0.73 18.80 16 38 H 0.28 14.15 8.31 -92.71 -0.77 13.38 16 39 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.42 7.11 6.98 -92.70 -0.65 6.47 16 42 H 0.21 -0.29 8.06 -2.91 -0.02 -0.31 16 43 H 0.20 -1.32 8.06 -2.91 -0.02 -1.35 16 44 H 0.18 0.34 8.06 -2.91 -0.02 0.31 16 Total: -1.00 -79.05 381.15 -0.51 -79.55 By element: Atomic # 1 Polarization: 37.22 SS G_CDS: -0.91 Total: 36.31 kcal Atomic # 6 Polarization: 17.98 SS G_CDS: 6.51 Total: 24.50 kcal Atomic # 7 Polarization: -121.50 SS G_CDS: -8.73 Total: -130.23 kcal Atomic # 8 Polarization: -52.83 SS G_CDS: -0.11 Total: -52.94 kcal Atomic # 9 Polarization: -3.05 SS G_CDS: 0.70 Total: -2.35 kcal Atomic # 14 Polarization: 43.13 SS G_CDS: 2.03 Total: 45.16 kcal Total: -79.05 -0.51 -79.55 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319257788.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.256 kcal (2) G-P(sol) polarization free energy of solvation -79.046 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -110.302 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -110.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds