Wall clock time and date at job start Tue Mar 31 2020 20:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46876 * 2 1 4 4 C 1.53003 * 109.46751 * 119.99669 * 2 1 3 5 5 N 1.46907 * 109.46817 * 174.99942 * 4 2 1 6 6 C 1.46899 * 110.99778 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46838 * 179.97438 * 6 5 4 8 8 O 1.21289 * 120.00104 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99778 * 179.97438 * 7 6 5 10 10 C 1.37090 * 119.99634 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00465 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99725 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99928 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99964 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46902 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47295 * 119.99567 * 14 12 10 17 17 H 1.48497 * 109.46751 * 239.99776 * 14 12 10 18 18 N 1.46495 * 109.46950 * 239.99436 * 2 1 3 19 19 C 1.46498 * 120.00322 * 300.00158 * 18 2 1 20 20 C 1.34784 * 119.99508 * 120.00337 * 18 2 1 21 21 O 1.21530 * 120.00164 * 357.18955 * 20 18 2 22 22 C 1.48049 * 119.99700 * 177.19275 * 20 18 2 23 23 C 1.39379 * 119.68936 * 186.85224 * 22 20 18 24 24 C 1.38464 * 119.09344 * 180.02562 * 23 22 20 25 25 C 1.38904 * 118.46810 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.35052 * 179.97438 * 25 24 23 27 27 C 1.38870 * 119.29862 * 359.97438 * 25 24 23 28 28 N 1.31463 * 120.85862 * 359.72628 * 27 25 24 29 29 H 1.09001 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47126 * 300.00150 * 1 2 3 31 31 H 1.09000 * 109.47225 * 60.00330 * 1 2 3 32 32 H 1.09002 * 109.47488 * 55.00308 * 4 2 1 33 33 H 1.09003 * 109.47024 * 294.99919 * 4 2 1 34 34 H 1.00899 * 110.99951 * 303.95805 * 5 4 2 35 35 H 1.08997 * 109.47466 * 300.00166 * 6 5 4 36 36 H 1.09006 * 109.46581 * 60.00397 * 6 5 4 37 37 H 0.96996 * 119.99769 * 0.02562 * 9 7 6 38 38 H 0.97003 * 119.99848 * 180.02562 * 13 12 10 39 39 H 1.08994 * 109.47350 * 96.10274 * 19 18 2 40 40 H 1.09000 * 109.46979 * 216.10043 * 19 18 2 41 41 H 1.08994 * 109.46914 * 336.09572 * 19 18 2 42 42 H 1.08002 * 120.45691 * 359.97438 * 23 22 20 43 43 H 1.07993 * 120.76924 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.57499 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0303 -1.5148 2.3769 7 6 5.5316 -1.6044 2.2808 8 8 6.1066 -1.1402 1.3190 9 7 6.2354 -2.1994 3.2643 10 6 7.6012 -2.2804 3.1772 11 1 8.1132 -1.8671 2.3207 12 6 8.3268 -2.8943 4.1908 13 7 7.7038 -3.3967 5.2332 14 14 10.1878 -3.0041 4.0725 15 1 10.6420 -2.3671 2.8103 16 1 10.7997 -2.3027 5.2295 17 1 10.6011 -4.4304 4.0832 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4278 20 6 2.7932 -0.0357 -2.0833 21 8 3.0448 1.1417 -1.9175 22 6 3.3379 -0.7506 -3.2598 23 6 4.2521 -0.1100 -4.0945 24 6 4.7532 -0.7900 -5.1916 25 6 4.3226 -2.0911 -5.4176 26 9 4.7865 -2.7895 -6.4769 27 6 3.4102 -2.6665 -4.5429 28 7 2.9563 -1.9980 -3.5060 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 3.7996 -1.2883 0.3434 35 1 3.7558 -0.9569 3.2721 36 1 3.6095 -2.5188 2.4310 37 1 5.7756 -2.5702 4.0336 38 1 8.2104 -3.8249 5.9409 39 1 0.7996 -2.1453 -2.0892 40 1 2.5064 -2.6089 -1.8896 41 1 1.4239 -2.5691 -0.4772 42 1 4.5647 0.9031 -3.8888 43 1 5.4631 -0.3199 -5.8560 44 1 3.0727 -3.6781 -4.7141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319448343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:10 Heat of formation + Delta-G solvation = -53.259230 kcal Electronic energy + Delta-G solvation = -29112.242909 eV Core-core repulsion = 24787.281987 eV Total energy + Delta-G solvation = -4324.960922 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.40235 -41.03362 -39.35938 -38.22559 -36.89797 -34.67260 -33.80086 -33.03443 -32.06737 -31.19046 -30.76811 -27.56213 -26.99955 -25.19130 -24.75026 -24.25562 -23.18266 -21.77123 -19.71092 -19.13774 -18.09837 -18.02174 -17.86622 -17.36551 -16.44990 -16.39462 -16.19280 -15.68131 -15.21719 -15.14489 -14.55143 -14.42372 -14.33446 -14.13724 -13.90485 -13.77458 -13.72659 -13.34763 -13.15251 -13.12877 -12.89693 -12.57786 -12.35187 -12.01840 -11.85745 -11.60150 -11.57982 -11.38432 -11.07960 -10.93438 -10.39253 -10.33192 -10.31007 -10.20809 -9.57637 -9.50180 -9.36569 -8.73938 -8.38604 -8.00525 -7.93113 -6.40129 -3.80620 0.16974 0.67057 2.48773 2.77255 3.17391 3.27715 3.35317 3.46161 3.53858 3.78550 3.93422 4.09333 4.24904 4.31375 4.34885 4.45551 4.83828 4.93739 5.01391 5.13657 5.18090 5.20772 5.27447 5.28658 5.42884 5.46819 5.48745 5.53272 5.62020 5.69867 5.81023 5.89769 5.92011 6.00392 6.08898 6.19759 6.29154 6.53505 7.13071 7.24666 7.30620 7.57062 7.69092 8.05017 8.08690 8.63739 9.20090 9.56553 10.08517 10.77810 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.003033 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.924921 B = 9228.423826 C =11311.375796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.135 3.865 3 H 0.111 0.889 4 C 0.049 3.951 5 N -0.664 5.664 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.581 6.581 9 N -0.565 5.565 10 C -0.298 4.298 11 H 0.103 0.897 12 C 0.022 3.978 13 N -0.902 5.902 14 Si 0.929 3.071 15 H -0.268 1.268 16 H -0.281 1.281 17 H -0.282 1.282 18 N -0.590 5.590 19 C 0.069 3.931 20 C 0.575 3.425 21 O -0.522 6.522 22 C 0.073 3.927 23 C -0.077 4.077 24 C -0.114 4.114 25 C 0.069 3.931 26 F -0.126 7.126 27 C 0.068 3.932 28 N -0.423 5.423 29 H 0.058 0.942 30 H 0.070 0.930 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.084 0.916 34 H 0.348 0.652 35 H 0.087 0.913 36 H 0.041 0.959 37 H 0.392 0.608 38 H 0.270 0.730 39 H 0.056 0.944 40 H 0.109 0.891 41 H 0.059 0.941 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.825 0.934 -16.794 23.094 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.032 3.968 3 H 0.129 0.871 4 C -0.081 4.081 5 N -0.297 5.297 6 C -0.082 4.082 7 C 0.227 3.773 8 O -0.465 6.465 9 N -0.202 5.202 10 C -0.427 4.427 11 H 0.121 0.879 12 C -0.180 4.180 13 N -0.544 5.544 14 Si 0.756 3.244 15 H -0.192 1.192 16 H -0.207 1.207 17 H -0.208 1.208 18 N -0.322 5.322 19 C -0.073 4.073 20 C 0.361 3.639 21 O -0.398 6.398 22 C -0.064 4.064 23 C -0.098 4.098 24 C -0.140 4.140 25 C 0.047 3.953 26 F -0.104 7.104 27 C -0.093 4.093 28 N -0.134 5.134 29 H 0.077 0.923 30 H 0.089 0.911 31 H 0.079 0.921 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.168 0.832 35 H 0.105 0.895 36 H 0.059 0.941 37 H 0.225 0.775 38 H 0.080 0.920 39 H 0.074 0.926 40 H 0.127 0.873 41 H 0.078 0.922 42 H 0.178 0.822 43 H 0.173 0.827 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -15.695 2.017 -16.361 22.761 hybrid contribution 1.092 -1.249 -0.351 1.696 sum -14.604 0.768 -16.712 22.207 Atomic orbital electron populations 1.22085 0.94455 1.02383 1.02628 1.21261 0.93571 0.98942 0.83005 0.87079 1.22348 0.89081 0.98899 0.97789 1.59998 1.07486 1.57364 1.04885 1.21681 0.95085 0.96858 0.94567 1.19826 0.88116 0.84144 0.85261 1.90531 1.71130 1.51346 1.33497 1.41862 1.07396 1.51058 1.19850 1.19752 0.81549 1.34915 1.06511 0.87933 1.25254 1.00645 0.96847 0.95224 1.69622 1.36564 1.38837 1.09382 0.85809 0.82309 0.77846 0.78442 1.19241 1.20718 1.20790 1.47688 1.49351 1.13087 1.22055 1.22415 1.03155 0.80871 1.00907 1.17673 0.78528 0.86018 0.81667 1.90806 1.58908 1.15017 1.75022 1.21296 0.97378 0.90962 0.96798 1.22069 0.93754 1.02036 0.91914 1.21711 1.00561 0.93016 0.98722 1.19072 0.97471 0.91574 0.87194 1.91551 1.86988 1.78308 1.53592 1.23098 0.94689 1.01367 0.90105 1.68169 1.23078 1.06659 1.15511 0.92271 0.91096 0.92109 0.95186 0.89779 0.83244 0.89526 0.94065 0.77492 0.91964 0.92576 0.87315 0.92213 0.82202 0.82670 0.80832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.36 9.19 37.16 0.34 -1.01 16 2 C 0.14 1.60 2.94 -67.93 -0.20 1.41 16 3 H 0.11 1.58 6.90 -51.93 -0.36 1.22 16 4 C 0.05 0.62 5.00 -3.82 -0.02 0.60 16 5 N -0.66 -11.48 6.12 -115.05 -0.70 -12.18 16 6 C 0.05 0.93 6.17 -4.98 -0.03 0.90 16 7 C 0.44 10.77 7.82 -10.98 -0.09 10.68 16 8 O -0.58 -16.41 15.78 5.55 0.09 -16.32 16 9 N -0.56 -14.61 5.29 -10.96 -0.06 -14.67 16 10 C -0.30 -8.46 9.68 -14.93 -0.14 -8.60 16 11 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 12 C 0.02 0.59 5.50 -17.47 -0.10 0.49 16 13 N -0.90 -24.80 13.05 55.50 0.72 -24.08 16 14 Si 0.93 21.33 29.55 -169.99 -5.02 16.30 16 15 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 16 H -0.28 -6.35 7.11 56.52 0.40 -5.95 16 17 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 18 N -0.59 -7.28 1.83 -174.98 -0.32 -7.60 16 19 C 0.07 0.69 8.36 59.85 0.50 1.19 16 20 C 0.57 8.27 7.66 -12.23 -0.09 8.18 16 21 O -0.52 -9.01 15.67 5.34 0.08 -8.93 16 22 C 0.07 0.90 6.63 -83.02 -0.55 0.35 16 23 C -0.08 -0.83 9.63 -39.07 -0.38 -1.21 16 24 C -0.11 -0.99 10.15 -39.25 -0.40 -1.39 16 25 C 0.07 0.61 7.36 -39.10 -0.29 0.33 16 26 F -0.13 -1.14 17.28 2.25 0.04 -1.10 16 27 C 0.07 0.59 11.17 -17.48 -0.20 0.39 16 28 N -0.42 -4.47 5.99 -9.74 -0.06 -4.52 16 29 H 0.06 0.46 7.67 -51.93 -0.40 0.06 16 30 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 32 H 0.03 0.34 6.87 -51.93 -0.36 -0.02 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.55 16 34 H 0.35 6.46 7.56 -39.29 -0.30 6.16 16 35 H 0.09 1.45 8.14 -51.93 -0.42 1.03 16 36 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 37 H 0.39 9.65 7.90 -40.82 -0.32 9.33 16 38 H 0.27 7.01 8.31 -40.82 -0.34 6.67 16 39 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 40 H 0.11 1.18 5.17 -53.22 -0.27 0.91 16 41 H 0.06 0.55 6.54 -51.93 -0.34 0.21 16 42 H 0.16 1.66 7.65 -52.49 -0.40 1.25 16 43 H 0.16 0.96 8.06 -52.49 -0.42 0.53 16 44 H 0.17 1.00 8.06 -52.49 -0.42 0.57 16 LS Contribution 375.83 15.07 5.66 5.66 Total: -1.00 -34.25 375.83 -6.84 -41.09 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -5.64 Total: 14.04 kcal Atomic # 6 Polarization: 13.94 SS G_CDS: -1.64 Total: 12.30 kcal Atomic # 7 Polarization: -62.64 SS G_CDS: -0.42 Total: -63.05 kcal Atomic # 8 Polarization: -25.42 SS G_CDS: 0.17 Total: -25.25 kcal Atomic # 9 Polarization: -1.14 SS G_CDS: 0.04 Total: -1.10 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.30 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -34.25 -6.84 -41.09 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319448343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.167 kcal (2) G-P(sol) polarization free energy of solvation -34.249 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.415 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.093 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.259 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds