Wall clock time and date at job start Tue Mar 31 2020 20:51:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46876 * 2 1 4 4 C 1.53003 * 109.46751 * 119.99669 * 2 1 3 5 5 N 1.46907 * 109.46817 * 174.99942 * 4 2 1 6 6 C 1.46899 * 110.99778 * 179.97438 * 5 4 2 7 7 C 1.50703 * 109.46838 * 179.97438 * 6 5 4 8 8 O 1.21289 * 120.00104 * 0.02562 * 7 6 5 9 9 N 1.34782 * 119.99778 * 179.97438 * 7 6 5 10 10 C 1.37090 * 119.99634 * 180.02562 * 9 7 6 11 11 H 1.08003 * 120.00465 * 0.02562 * 10 9 7 12 12 C 1.38956 * 119.99725 * 180.02562 * 10 9 7 13 13 N 1.31411 * 119.99928 * 359.97438 * 12 10 9 14 14 Si 1.86806 * 119.99964 * 180.02562 * 12 10 9 15 15 H 1.48498 * 109.46902 * 359.97438 * 14 12 10 16 16 H 1.48496 * 109.47295 * 119.99567 * 14 12 10 17 17 H 1.48497 * 109.46751 * 239.99776 * 14 12 10 18 18 N 1.46495 * 109.46950 * 239.99436 * 2 1 3 19 19 C 1.46498 * 120.00322 * 300.00158 * 18 2 1 20 20 C 1.34784 * 119.99508 * 120.00337 * 18 2 1 21 21 O 1.21530 * 120.00164 * 357.18955 * 20 18 2 22 22 C 1.48049 * 119.99700 * 177.19275 * 20 18 2 23 23 C 1.39379 * 119.68936 * 186.85224 * 22 20 18 24 24 C 1.38464 * 119.09344 * 180.02562 * 23 22 20 25 25 C 1.38904 * 118.46810 * 359.97438 * 24 23 22 26 26 F 1.35099 * 120.35052 * 179.97438 * 25 24 23 27 27 C 1.38870 * 119.29862 * 359.97438 * 25 24 23 28 28 N 1.31463 * 120.85862 * 359.72628 * 27 25 24 29 29 H 1.09001 * 109.47331 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47126 * 300.00150 * 1 2 3 31 31 H 1.09000 * 109.47225 * 60.00330 * 1 2 3 32 32 H 1.09002 * 109.47488 * 55.00308 * 4 2 1 33 33 H 1.09003 * 109.47024 * 294.99919 * 4 2 1 34 34 H 1.00899 * 110.99951 * 303.95805 * 5 4 2 35 35 H 1.08997 * 109.47466 * 300.00166 * 6 5 4 36 36 H 1.09006 * 109.46581 * 60.00397 * 6 5 4 37 37 H 0.96996 * 119.99769 * 0.02562 * 9 7 6 38 38 H 0.97003 * 119.99848 * 180.02562 * 13 12 10 39 39 H 1.08994 * 109.47350 * 96.10274 * 19 18 2 40 40 H 1.09000 * 109.46979 * 216.10043 * 19 18 2 41 41 H 1.08994 * 109.46914 * 336.09572 * 19 18 2 42 42 H 1.08002 * 120.45691 * 359.97438 * 23 22 20 43 43 H 1.07993 * 120.76924 * 180.02562 * 24 23 22 44 44 H 1.08000 * 119.57499 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 1.2493 5 7 3.5040 -0.8267 1.1905 6 6 4.0303 -1.5148 2.3769 7 6 5.5316 -1.6044 2.2808 8 8 6.1066 -1.1402 1.3190 9 7 6.2354 -2.1994 3.2643 10 6 7.6012 -2.2804 3.1772 11 1 8.1132 -1.8671 2.3207 12 6 8.3268 -2.8943 4.1908 13 7 7.7038 -3.3967 5.2332 14 14 10.1878 -3.0041 4.0725 15 1 10.6420 -2.3671 2.8103 16 1 10.7997 -2.3027 5.2295 17 1 10.6011 -4.4304 4.0832 18 7 2.0183 -0.6907 -1.1961 19 6 1.6644 -2.0933 -1.4278 20 6 2.7932 -0.0357 -2.0833 21 8 3.0448 1.1417 -1.9175 22 6 3.3379 -0.7506 -3.2598 23 6 4.2521 -0.1100 -4.0945 24 6 4.7532 -0.7900 -5.1916 25 6 4.3226 -2.0911 -5.4176 26 9 4.7865 -2.7895 -6.4769 27 6 3.4102 -2.6665 -4.5429 28 7 2.9563 -1.9980 -3.5060 29 1 -0.3634 -1.0277 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 1.6053 -1.7198 1.2953 33 1 1.7515 -0.1582 2.1370 34 1 3.7996 -1.2883 0.3434 35 1 3.7558 -0.9569 3.2721 36 1 3.6095 -2.5188 2.4310 37 1 5.7756 -2.5702 4.0336 38 1 8.2104 -3.8249 5.9409 39 1 0.7996 -2.1453 -2.0892 40 1 2.5064 -2.6089 -1.8896 41 1 1.4239 -2.5691 -0.4772 42 1 4.5647 0.9031 -3.8888 43 1 5.4631 -0.3199 -5.8560 44 1 3.0727 -3.6781 -4.7141 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319448343.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:10 Heat of formation + Delta-G solvation = -77.717621 kcal Electronic energy + Delta-G solvation = -29113.303505 eV Core-core repulsion = 24787.281987 eV Total energy + Delta-G solvation = -4326.021518 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.12894 -41.91603 -40.37778 -40.01483 -38.05132 -36.18306 -35.56720 -33.89539 -33.29078 -32.94074 -31.60588 -28.98632 -27.87010 -26.72295 -25.79572 -25.02502 -24.54705 -22.68519 -21.17474 -20.51538 -19.91337 -18.97283 -18.77639 -18.25000 -17.86022 -17.43532 -17.18701 -16.91747 -16.47070 -16.36035 -16.01823 -15.96163 -15.42767 -15.23384 -15.14002 -14.88719 -14.66796 -14.39463 -14.29501 -14.07967 -13.98942 -13.82989 -13.54982 -13.20923 -13.08643 -12.97985 -12.83890 -12.74926 -12.47881 -12.39869 -12.13028 -11.90340 -11.53630 -11.37030 -11.11875 -10.44778 -10.36301 -10.16943 -10.03316 -9.65073 -9.28629 -8.48576 -5.97311 -0.65754 -0.05915 1.35005 1.40311 1.54565 1.55054 1.86231 2.02847 2.27794 2.58914 2.77900 2.89032 2.99283 3.18499 3.45656 3.52491 3.64968 3.72090 3.91465 4.06180 4.18405 4.23761 4.32458 4.34388 4.46701 4.55928 4.57783 4.68677 4.70363 4.73321 4.76318 4.83395 4.87225 5.07335 5.18283 5.28908 5.39156 5.42295 5.65198 5.87431 6.09617 6.22382 6.32989 6.44573 6.58651 7.03665 7.11018 7.53940 8.10113 8.69046 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009574 B = 0.003033 C = 0.002475 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2923.924921 B = 9228.423826 C =11311.375796 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.133 3.867 3 H 0.080 0.920 4 C 0.052 3.948 5 N -0.686 5.686 6 C 0.066 3.934 7 C 0.435 3.565 8 O -0.626 6.626 9 N -0.571 5.571 10 C -0.335 4.335 11 H 0.075 0.925 12 C -0.011 4.011 13 N -0.919 5.919 14 Si 0.992 3.008 15 H -0.276 1.276 16 H -0.270 1.270 17 H -0.268 1.268 18 N -0.586 5.586 19 C 0.070 3.930 20 C 0.563 3.437 21 O -0.567 6.567 22 C 0.050 3.950 23 C -0.090 4.090 24 C -0.107 4.107 25 C 0.071 3.929 26 F -0.123 7.123 27 C 0.072 3.928 28 N -0.425 5.425 29 H 0.075 0.925 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.055 0.945 33 H 0.098 0.902 34 H 0.337 0.663 35 H 0.107 0.893 36 H 0.069 0.931 37 H 0.397 0.603 38 H 0.278 0.722 39 H 0.072 0.928 40 H 0.102 0.898 41 H 0.072 0.928 42 H 0.154 0.846 43 H 0.181 0.819 44 H 0.207 0.793 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.865 -0.753 -16.725 23.764 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.030 3.970 3 H 0.098 0.902 4 C -0.077 4.077 5 N -0.319 5.319 6 C -0.066 4.066 7 C 0.223 3.777 8 O -0.513 6.513 9 N -0.208 5.208 10 C -0.464 4.464 11 H 0.093 0.907 12 C -0.211 4.211 13 N -0.560 5.560 14 Si 0.816 3.184 15 H -0.200 1.200 16 H -0.195 1.195 17 H -0.193 1.193 18 N -0.317 5.317 19 C -0.072 4.072 20 C 0.351 3.649 21 O -0.446 6.446 22 C -0.087 4.087 23 C -0.111 4.111 24 C -0.133 4.133 25 C 0.049 3.951 26 F -0.102 7.102 27 C -0.089 4.089 28 N -0.136 5.136 29 H 0.094 0.906 30 H 0.105 0.895 31 H 0.075 0.925 32 H 0.073 0.927 33 H 0.117 0.883 34 H 0.156 0.844 35 H 0.125 0.875 36 H 0.087 0.913 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.090 0.910 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.172 0.828 43 H 0.198 0.802 44 H 0.223 0.777 Dipole moment (debyes) X Y Z Total from point charges -16.791 0.299 -16.250 23.369 hybrid contribution 1.396 -0.766 -0.420 1.647 sum -15.395 -0.466 -16.671 22.697 Atomic orbital electron populations 1.22004 0.91485 1.03651 1.03252 1.21291 0.95706 0.97236 0.82734 0.90191 1.22465 0.86155 1.00485 0.98604 1.59990 1.10591 1.57366 1.03905 1.21551 0.90252 0.98983 0.95837 1.20939 0.90736 0.82207 0.83840 1.90500 1.72872 1.52818 1.35092 1.41910 1.06846 1.51586 1.20494 1.19676 0.83091 1.36958 1.06711 0.90662 1.26022 1.04876 0.95731 0.94446 1.69672 1.38222 1.38459 1.09599 0.84887 0.76889 0.78407 0.78240 1.20049 1.19497 1.19323 1.47833 1.48424 1.13894 1.21570 1.22511 1.03414 0.79369 1.01891 1.18104 0.78490 0.85812 0.82526 1.90763 1.60708 1.16851 1.76321 1.21158 0.98686 0.91950 0.96875 1.22113 0.94132 1.02145 0.92684 1.21944 1.00313 0.92990 0.98103 1.19147 0.97280 0.91555 0.87144 1.91563 1.86925 1.78210 1.53467 1.23625 0.93908 1.02338 0.89071 1.68163 1.23402 1.05875 1.16207 0.90565 0.89492 0.92525 0.92714 0.88345 0.84443 0.87492 0.91283 0.76880 0.91222 0.90957 0.88066 0.90934 0.82786 0.80172 0.77677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.22 9.19 71.98 0.66 -1.56 16 2 C 0.13 3.09 2.94 44.99 0.13 3.22 16 3 H 0.08 2.38 6.90 -2.39 -0.02 2.36 16 4 C 0.05 1.21 5.00 86.30 0.43 1.64 16 5 N -0.69 -23.34 6.12 -517.90 -3.17 -26.51 16 6 C 0.07 2.33 6.17 85.56 0.53 2.86 16 7 C 0.44 21.52 7.82 87.66 0.69 22.21 16 8 O -0.63 -36.61 15.78 -3.06 -0.05 -36.66 16 9 N -0.57 -29.94 5.29 -306.98 -1.62 -31.56 16 10 C -0.33 -19.44 9.68 84.04 0.81 -18.63 16 11 H 0.08 4.71 7.16 -2.91 -0.02 4.69 16 12 C -0.01 -0.59 5.50 84.93 0.47 -0.12 16 13 N -0.92 -49.79 13.05 21.66 0.28 -49.51 16 14 Si 0.99 43.48 29.55 68.60 2.03 45.51 16 15 H -0.28 -12.33 7.11 99.48 0.71 -11.62 16 16 H -0.27 -11.30 7.11 99.48 0.71 -10.59 16 17 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 18 N -0.59 -14.42 1.83 -825.79 -1.51 -15.93 16 19 C 0.07 1.29 8.36 127.77 1.07 2.36 16 20 C 0.56 17.00 7.66 86.85 0.66 17.66 16 21 O -0.57 -21.07 15.67 -3.81 -0.06 -21.13 16 22 C 0.05 1.27 6.63 41.88 0.28 1.54 16 23 C -0.09 -2.02 9.63 22.60 0.22 -1.80 16 24 C -0.11 -1.81 10.15 22.48 0.23 -1.58 16 25 C 0.07 1.16 7.36 22.58 0.17 1.32 16 26 F -0.12 -1.99 17.28 44.97 0.78 -1.21 16 27 C 0.07 1.13 11.17 84.90 0.95 2.08 16 28 N -0.42 -8.71 5.99 -184.74 -1.11 -9.82 16 29 H 0.08 0.92 7.67 -2.39 -0.02 0.90 16 30 H 0.09 1.06 8.14 -2.38 -0.02 1.04 16 31 H 0.06 0.93 8.14 -2.39 -0.02 0.91 16 32 H 0.05 1.03 6.87 -2.39 -0.02 1.02 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.34 12.63 7.56 -89.70 -0.68 11.95 16 35 H 0.11 3.36 8.14 -2.39 -0.02 3.34 16 36 H 0.07 2.08 8.14 -2.38 -0.02 2.06 16 37 H 0.40 19.57 7.90 -92.71 -0.73 18.84 16 38 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 39 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 40 H 0.10 2.10 5.17 -4.95 -0.03 2.07 16 41 H 0.07 1.14 6.54 -2.39 -0.02 1.13 16 42 H 0.15 3.52 7.65 -2.91 -0.02 3.50 16 43 H 0.18 1.99 8.06 -2.91 -0.02 1.97 16 44 H 0.21 1.78 8.06 -2.91 -0.02 1.76 16 Total: -1.00 -76.87 375.83 2.50 -74.38 By element: Atomic # 1 Polarization: 41.60 SS G_CDS: -0.36 Total: 41.24 kcal Atomic # 6 Polarization: 23.92 SS G_CDS: 7.29 Total: 31.21 kcal Atomic # 7 Polarization: -126.20 SS G_CDS: -7.13 Total: -133.33 kcal Atomic # 8 Polarization: -57.68 SS G_CDS: -0.11 Total: -57.79 kcal Atomic # 9 Polarization: -1.99 SS G_CDS: 0.78 Total: -1.21 kcal Atomic # 14 Polarization: 43.48 SS G_CDS: 2.03 Total: 45.51 kcal Total: -76.87 2.50 -74.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319448343.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.342 kcal (2) G-P(sol) polarization free energy of solvation -76.875 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds