Wall clock time and date at job start Tue Mar 31 2020 20:51:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46910 * 2 1 4 4 C 1.52996 * 109.47437 * 239.99692 * 2 1 3 5 5 N 1.46897 * 109.47357 * 184.99750 * 4 2 1 6 6 C 1.46894 * 111.00487 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47664 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99690 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00398 * 179.97438 * 7 6 5 10 10 C 1.37091 * 120.00404 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99976 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00632 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99337 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00552 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47192 * 59.99701 * 14 12 10 16 16 H 1.48493 * 109.47435 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46921 * 300.00266 * 14 12 10 18 18 N 1.46504 * 109.46805 * 119.99809 * 2 1 3 19 19 C 1.46494 * 120.00210 * 60.00535 * 18 2 1 20 20 C 1.34785 * 119.99650 * 240.00024 * 18 2 1 21 21 O 1.21527 * 119.99918 * 5.71469 * 20 18 2 22 22 C 1.48055 * 119.99589 * 185.71531 * 20 18 2 23 23 C 1.39379 * 119.68878 * 186.32232 * 22 20 18 24 24 C 1.38465 * 119.09319 * 179.75594 * 23 22 20 25 25 C 1.38900 * 118.46763 * 0.50101 * 24 23 22 26 26 F 1.35103 * 120.35256 * 179.75171 * 25 24 23 27 27 C 1.38880 * 119.29817 * 359.73996 * 25 24 23 28 28 N 1.31456 * 120.85408 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.47305 * 60.00587 * 1 2 3 30 30 H 1.09003 * 109.46836 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47292 * 299.99793 * 1 2 3 32 32 H 1.08996 * 109.47070 * 305.00003 * 4 2 1 33 33 H 1.09000 * 109.46888 * 65.00228 * 4 2 1 34 34 H 1.00905 * 111.00154 * 56.04547 * 5 4 2 35 35 H 1.09004 * 109.46770 * 300.00150 * 6 5 4 36 36 H 1.08996 * 109.47081 * 59.99994 * 6 5 4 37 37 H 0.97005 * 119.99735 * 359.97438 * 9 7 6 38 38 H 0.97007 * 119.99647 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.47340 * 95.50685 * 19 18 2 40 40 H 1.09004 * 109.47347 * 335.50340 * 19 18 2 41 41 H 1.08997 * 109.47220 * 215.50641 * 19 18 2 42 42 H 1.07997 * 120.45366 * 359.97438 * 23 22 20 43 43 H 1.07999 * 120.76512 * 180.21414 * 24 23 22 44 44 H 1.07996 * 119.57480 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8266 -1.1903 6 6 4.0305 -1.5148 -2.3765 7 6 5.5318 -1.6043 -2.2805 8 8 6.1067 -1.1408 -1.3182 9 7 6.2356 -2.2003 -3.2633 10 6 7.6014 -2.2812 -3.1762 11 1 8.1133 -1.8678 -2.3197 12 6 8.3271 -2.8952 -4.1897 13 7 7.7042 -3.3986 -5.2314 14 14 10.1880 -3.0061 -4.0707 15 1 10.5615 -3.7663 -2.8509 16 1 10.7202 -3.7013 -5.2701 17 1 10.7617 -1.6384 -3.9965 18 7 2.0183 -0.6906 1.1962 19 6 1.6645 -2.0931 1.4281 20 6 2.7931 -0.0355 2.0834 21 8 3.0014 1.1539 1.9464 22 6 3.3905 -0.7650 3.2249 23 6 4.0800 -0.0601 4.2100 24 6 4.6293 -0.7542 5.2748 25 6 4.4795 -2.1346 5.3133 26 9 5.0045 -2.8501 6.3319 27 6 3.7840 -2.7714 4.2937 28 7 3.2693 -2.0849 3.2977 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -1.7198 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.7997 -1.2883 -0.3432 35 1 3.6098 -2.5189 -2.4306 36 1 3.7560 -0.9571 -3.2718 37 1 5.7758 -2.5719 -4.0323 38 1 8.2108 -3.8269 -5.9392 39 1 2.4637 -2.7354 1.0582 40 1 0.7384 -2.3260 0.9023 41 1 1.5279 -2.2616 2.4963 42 1 4.1813 1.0132 4.1456 43 1 5.1660 -0.2348 6.0549 44 1 3.6651 -3.8445 4.3190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319448344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:13 Heat of formation + Delta-G solvation = -55.525247 kcal Electronic energy + Delta-G solvation = -29145.840825 eV Core-core repulsion = 24820.781641 eV Total energy + Delta-G solvation = -4325.059184 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.38717 -41.00864 -39.35715 -38.21293 -36.89699 -34.66327 -33.78571 -33.01015 -32.06881 -31.18134 -30.76464 -27.56666 -27.01067 -25.18659 -24.73451 -24.23610 -23.16347 -21.76177 -19.69985 -19.12417 -18.10523 -17.99023 -17.85615 -17.37055 -16.47659 -16.32071 -16.18339 -15.65964 -15.21904 -15.17641 -14.52099 -14.43466 -14.32059 -14.10781 -13.84760 -13.79462 -13.70245 -13.36768 -13.20334 -13.04083 -12.87809 -12.58677 -12.32774 -12.06126 -11.83585 -11.60981 -11.56204 -11.38425 -11.03615 -10.91412 -10.42209 -10.38140 -10.32651 -10.18654 -9.64834 -9.47132 -9.35154 -8.75114 -8.38346 -7.99711 -7.92129 -6.38981 -3.79515 0.18213 0.69238 2.48263 2.78057 3.22080 3.27228 3.32066 3.43851 3.57267 3.82360 3.94790 4.10384 4.25175 4.32661 4.35802 4.46516 4.86577 4.90371 5.02664 5.12690 5.17202 5.21554 5.28657 5.29957 5.43174 5.45536 5.48117 5.54410 5.62488 5.66697 5.81974 5.88304 5.90865 6.01510 6.08264 6.15217 6.30334 6.50447 7.15421 7.26240 7.31451 7.57661 7.71118 8.04194 8.09370 8.64966 9.21001 9.57607 10.09861 10.78859 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.003092 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.246656 B = 9052.051550 C =11185.400142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.136 3.864 3 H 0.111 0.889 4 C 0.050 3.950 5 N -0.665 5.665 6 C 0.051 3.949 7 C 0.441 3.559 8 O -0.581 6.581 9 N -0.564 5.564 10 C -0.299 4.299 11 H 0.102 0.898 12 C 0.022 3.978 13 N -0.903 5.903 14 Si 0.930 3.070 15 H -0.274 1.274 16 H -0.284 1.284 17 H -0.273 1.273 18 N -0.592 5.592 19 C 0.085 3.915 20 C 0.576 3.424 21 O -0.523 6.523 22 C 0.073 3.927 23 C -0.079 4.079 24 C -0.115 4.115 25 C 0.069 3.931 26 F -0.126 7.126 27 C 0.070 3.930 28 N -0.422 5.422 29 H 0.071 0.929 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.030 0.970 33 H 0.083 0.917 34 H 0.349 0.651 35 H 0.041 0.959 36 H 0.086 0.914 37 H 0.392 0.608 38 H 0.272 0.728 39 H 0.060 0.940 40 H 0.061 0.939 41 H 0.089 0.911 42 H 0.159 0.841 43 H 0.155 0.845 44 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.298 1.003 16.896 23.496 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.033 3.967 3 H 0.129 0.871 4 C -0.080 4.080 5 N -0.298 5.298 6 C -0.081 4.081 7 C 0.226 3.774 8 O -0.465 6.465 9 N -0.201 5.201 10 C -0.429 4.429 11 H 0.119 0.881 12 C -0.179 4.179 13 N -0.544 5.544 14 Si 0.757 3.243 15 H -0.200 1.200 16 H -0.210 1.210 17 H -0.199 1.199 18 N -0.324 5.324 19 C -0.058 4.058 20 C 0.363 3.637 21 O -0.398 6.398 22 C -0.065 4.065 23 C -0.100 4.100 24 C -0.142 4.142 25 C 0.047 3.953 26 F -0.104 7.104 27 C -0.090 4.090 28 N -0.133 5.133 29 H 0.090 0.910 30 H 0.078 0.922 31 H 0.080 0.920 32 H 0.048 0.952 33 H 0.102 0.898 34 H 0.169 0.831 35 H 0.059 0.941 36 H 0.104 0.896 37 H 0.225 0.775 38 H 0.081 0.919 39 H 0.078 0.922 40 H 0.080 0.920 41 H 0.108 0.892 42 H 0.177 0.823 43 H 0.173 0.827 44 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges -16.054 2.045 16.371 23.021 hybrid contribution 1.077 -1.214 0.452 1.685 sum -14.977 0.831 16.823 22.539 Atomic orbital electron populations 1.22103 0.94504 1.02363 1.02724 1.21261 0.93559 0.98912 0.82987 0.87089 1.22334 0.89112 0.98876 0.97705 1.60004 1.07486 1.57398 1.04951 1.21670 0.95068 0.96859 0.94551 1.19826 0.88125 0.84154 0.85263 1.90534 1.71143 1.51409 1.33450 1.41843 1.07361 1.50991 1.19911 1.19653 0.81583 1.35101 1.06519 0.88059 1.25245 1.00632 0.96814 0.95210 1.69607 1.36741 1.38708 1.09393 0.85924 0.82206 0.78612 0.77517 1.19958 1.20964 1.19881 1.47678 1.49592 1.13071 1.22046 1.22096 0.99978 0.80530 1.03180 1.17677 0.78567 0.86086 0.81402 1.90799 1.60392 1.14221 1.74364 1.21264 0.99140 0.89946 0.96170 1.22051 0.93605 1.02821 0.91514 1.21689 1.00164 0.92361 0.99965 1.19086 0.97854 0.90591 0.87753 1.91552 1.84081 1.77812 1.56989 1.23063 0.95206 1.01496 0.89273 1.68149 1.16148 1.07395 1.21601 0.91023 0.92210 0.92049 0.95217 0.89836 0.83127 0.94058 0.89561 0.77489 0.91863 0.92169 0.92022 0.89236 0.82316 0.82731 0.80826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.18 37.16 0.34 -0.99 16 2 C 0.14 1.60 2.94 -67.93 -0.20 1.40 16 3 H 0.11 1.58 6.91 -51.93 -0.36 1.22 16 4 C 0.05 0.63 5.03 -3.83 -0.02 0.61 16 5 N -0.67 -11.62 6.12 -115.07 -0.70 -12.32 16 6 C 0.05 0.95 6.17 -4.98 -0.03 0.92 16 7 C 0.44 10.86 7.82 -10.99 -0.09 10.77 16 8 O -0.58 -16.59 15.78 5.54 0.09 -16.50 16 9 N -0.56 -14.70 5.29 -10.96 -0.06 -14.76 16 10 C -0.30 -8.55 9.68 -14.93 -0.14 -8.69 16 11 H 0.10 3.04 7.16 -52.48 -0.38 2.67 16 12 C 0.02 0.61 5.50 -17.47 -0.10 0.52 16 13 N -0.90 -24.91 13.05 55.50 0.72 -24.19 16 14 Si 0.93 21.45 29.55 -169.99 -5.02 16.42 16 15 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 16 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 17 H -0.27 -6.29 7.11 56.52 0.40 -5.89 16 18 N -0.59 -7.27 1.83 -174.97 -0.32 -7.59 16 19 C 0.08 0.84 8.21 59.84 0.49 1.33 16 20 C 0.58 8.30 7.64 -12.23 -0.09 8.20 16 21 O -0.52 -8.98 15.68 5.34 0.08 -8.90 16 22 C 0.07 0.91 6.56 -83.02 -0.54 0.36 16 23 C -0.08 -0.84 9.63 -39.07 -0.38 -1.22 16 24 C -0.12 -1.00 10.15 -39.25 -0.40 -1.40 16 25 C 0.07 0.63 7.36 -39.10 -0.29 0.35 16 26 F -0.13 -1.17 17.28 2.25 0.04 -1.13 16 27 C 0.07 0.65 11.17 -17.47 -0.20 0.45 16 28 N -0.42 -4.68 6.17 -9.74 -0.06 -4.74 16 29 H 0.07 0.52 8.14 -51.93 -0.42 0.09 16 30 H 0.06 0.44 6.67 -51.93 -0.35 0.09 16 31 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.03 0.34 7.84 -51.93 -0.41 -0.07 16 33 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 34 H 0.35 6.58 7.56 -39.29 -0.30 6.28 16 35 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 36 H 0.09 1.46 8.14 -51.93 -0.42 1.04 16 37 H 0.39 9.71 7.90 -40.82 -0.32 9.39 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.06 0.67 7.98 -51.93 -0.41 0.26 16 40 H 0.06 0.49 6.44 -51.93 -0.33 0.15 16 41 H 0.09 0.83 5.81 -51.93 -0.30 0.53 16 42 H 0.16 1.57 7.65 -52.49 -0.40 1.17 16 43 H 0.16 0.93 8.06 -52.49 -0.42 0.51 16 44 H 0.17 1.12 8.06 -52.49 -0.42 0.70 16 LS Contribution 376.16 15.07 5.67 5.67 Total: -1.00 -34.58 376.16 -6.86 -41.43 By element: Atomic # 1 Polarization: 19.63 SS G_CDS: -5.65 Total: 13.98 kcal Atomic # 6 Polarization: 14.25 SS G_CDS: -1.64 Total: 12.61 kcal Atomic # 7 Polarization: -63.18 SS G_CDS: -0.42 Total: -63.59 kcal Atomic # 8 Polarization: -25.57 SS G_CDS: 0.17 Total: -25.39 kcal Atomic # 9 Polarization: -1.17 SS G_CDS: 0.04 Total: -1.13 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.02 Total: 16.42 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -34.58 -6.86 -41.43 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319448344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.092 kcal (2) G-P(sol) polarization free energy of solvation -34.578 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.669 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.856 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.433 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds