Wall clock time and date at job start Tue Mar 31 2020 20:51:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08996 * 109.46910 * 2 1 4 4 C 1.52996 * 109.47437 * 239.99692 * 2 1 3 5 5 N 1.46897 * 109.47357 * 184.99750 * 4 2 1 6 6 C 1.46894 * 111.00487 * 180.02562 * 5 4 2 7 7 C 1.50699 * 109.47664 * 180.02562 * 6 5 4 8 8 O 1.21297 * 119.99690 * 0.02562 * 7 6 5 9 9 N 1.34771 * 120.00398 * 179.97438 * 7 6 5 10 10 C 1.37091 * 120.00404 * 179.97438 * 9 7 6 11 11 H 1.08005 * 119.99976 * 0.02562 * 10 9 7 12 12 C 1.38956 * 120.00632 * 180.02562 * 10 9 7 13 13 N 1.31407 * 119.99337 * 359.97438 * 12 10 9 14 14 Si 1.86795 * 120.00552 * 180.02562 * 12 10 9 15 15 H 1.48501 * 109.47192 * 59.99701 * 14 12 10 16 16 H 1.48493 * 109.47435 * 180.02562 * 14 12 10 17 17 H 1.48509 * 109.46921 * 300.00266 * 14 12 10 18 18 N 1.46504 * 109.46805 * 119.99809 * 2 1 3 19 19 C 1.46494 * 120.00210 * 60.00535 * 18 2 1 20 20 C 1.34785 * 119.99650 * 240.00024 * 18 2 1 21 21 O 1.21527 * 119.99918 * 5.71469 * 20 18 2 22 22 C 1.48055 * 119.99589 * 185.71531 * 20 18 2 23 23 C 1.39379 * 119.68878 * 186.32232 * 22 20 18 24 24 C 1.38465 * 119.09319 * 179.75594 * 23 22 20 25 25 C 1.38900 * 118.46763 * 0.50101 * 24 23 22 26 26 F 1.35103 * 120.35256 * 179.75171 * 25 24 23 27 27 C 1.38880 * 119.29817 * 359.73996 * 25 24 23 28 28 N 1.31456 * 120.85408 * 0.02562 * 27 25 24 29 29 H 1.08997 * 109.47305 * 60.00587 * 1 2 3 30 30 H 1.09003 * 109.46836 * 180.02562 * 1 2 3 31 31 H 1.08994 * 109.47292 * 299.99793 * 1 2 3 32 32 H 1.08996 * 109.47070 * 305.00003 * 4 2 1 33 33 H 1.09000 * 109.46888 * 65.00228 * 4 2 1 34 34 H 1.00905 * 111.00154 * 56.04547 * 5 4 2 35 35 H 1.09004 * 109.46770 * 300.00150 * 6 5 4 36 36 H 1.08996 * 109.47081 * 59.99994 * 6 5 4 37 37 H 0.97005 * 119.99735 * 359.97438 * 9 7 6 38 38 H 0.97007 * 119.99647 * 179.97438 * 13 12 10 39 39 H 1.09001 * 109.47340 * 95.50685 * 19 18 2 40 40 H 1.09004 * 109.47347 * 335.50340 * 19 18 2 41 41 H 1.08997 * 109.47220 * 215.50641 * 19 18 2 42 42 H 1.07997 * 120.45366 * 359.97438 * 23 22 20 43 43 H 1.07999 * 120.76512 * 180.21414 * 24 23 22 44 44 H 1.07996 * 119.57480 * 179.97438 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7213 -1.2491 5 7 3.5041 -0.8266 -1.1903 6 6 4.0305 -1.5148 -2.3765 7 6 5.5318 -1.6043 -2.2805 8 8 6.1067 -1.1408 -1.3182 9 7 6.2356 -2.2003 -3.2633 10 6 7.6014 -2.2812 -3.1762 11 1 8.1133 -1.8678 -2.3197 12 6 8.3271 -2.8952 -4.1897 13 7 7.7042 -3.3986 -5.2314 14 14 10.1880 -3.0061 -4.0707 15 1 10.5615 -3.7663 -2.8509 16 1 10.7202 -3.7013 -5.2701 17 1 10.7617 -1.6384 -3.9965 18 7 2.0183 -0.6906 1.1962 19 6 1.6645 -2.0931 1.4281 20 6 2.7931 -0.0355 2.0834 21 8 3.0014 1.1539 1.9464 22 6 3.3905 -0.7650 3.2249 23 6 4.0800 -0.0601 4.2100 24 6 4.6293 -0.7542 5.2748 25 6 4.4795 -2.1346 5.3133 26 9 5.0045 -2.8501 6.3319 27 6 3.7840 -2.7714 4.2937 28 7 3.2693 -2.0849 3.2977 29 1 -0.3634 0.5137 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 1.6055 -1.7198 -1.2950 33 1 1.7518 -0.1584 -2.1369 34 1 3.7997 -1.2883 -0.3432 35 1 3.6098 -2.5189 -2.4306 36 1 3.7560 -0.9571 -3.2718 37 1 5.7758 -2.5719 -4.0323 38 1 8.2108 -3.8269 -5.9392 39 1 2.4637 -2.7354 1.0582 40 1 0.7384 -2.3260 0.9023 41 1 1.5279 -2.2616 2.4963 42 1 4.1813 1.0132 4.1456 43 1 5.1660 -0.2348 6.0549 44 1 3.6651 -3.8445 4.3190 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319448344.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:51:12 Heat of formation + Delta-G solvation = -80.351844 kcal Electronic energy + Delta-G solvation = -29146.917387 eV Core-core repulsion = 24820.781641 eV Total energy + Delta-G solvation = -4326.135746 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -50.13258 -41.90209 -40.37860 -40.02038 -38.05066 -36.18603 -35.56740 -33.87450 -33.29619 -32.94949 -31.61013 -28.98777 -27.89113 -26.71396 -25.80479 -25.01648 -24.53463 -22.68200 -21.17727 -20.50657 -19.91476 -18.98237 -18.76213 -18.27222 -17.84276 -17.46055 -17.10785 -16.95529 -16.46638 -16.39963 -16.02274 -15.96511 -15.42183 -15.25726 -15.12109 -14.86621 -14.59707 -14.39834 -14.33794 -14.15000 -13.91575 -13.80826 -13.53502 -13.22831 -13.08465 -12.97797 -12.83319 -12.75618 -12.49894 -12.43331 -12.13224 -11.86781 -11.53118 -11.38606 -11.11047 -10.49264 -10.39915 -10.17621 -10.03993 -9.67564 -9.30582 -8.48565 -5.97534 -0.65695 -0.04982 1.37909 1.39829 1.50936 1.53266 1.87158 2.02731 2.27648 2.56464 2.79542 2.89399 3.01054 3.18401 3.45603 3.52115 3.65058 3.72347 3.91528 4.06400 4.20289 4.23912 4.33142 4.36164 4.46607 4.54298 4.57606 4.69298 4.69707 4.71780 4.73707 4.80538 4.88996 5.04833 5.14739 5.30932 5.38302 5.40057 5.61042 5.87264 6.09565 6.22192 6.33277 6.45843 6.58422 7.02664 7.10487 7.53504 8.09854 8.68648 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009440 B = 0.003092 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2965.246656 B = 9052.051550 C =11185.400142 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.134 3.866 3 H 0.080 0.920 4 C 0.053 3.947 5 N -0.687 5.687 6 C 0.066 3.934 7 C 0.435 3.565 8 O -0.627 6.627 9 N -0.570 5.570 10 C -0.337 4.337 11 H 0.075 0.925 12 C -0.010 4.010 13 N -0.918 5.918 14 Si 0.992 3.008 15 H -0.272 1.272 16 H -0.267 1.267 17 H -0.274 1.274 18 N -0.588 5.588 19 C 0.086 3.914 20 C 0.565 3.435 21 O -0.566 6.566 22 C 0.048 3.952 23 C -0.088 4.088 24 C -0.107 4.107 25 C 0.071 3.929 26 F -0.123 7.123 27 C 0.070 3.930 28 N -0.429 5.429 29 H 0.087 0.913 30 H 0.077 0.923 31 H 0.057 0.943 32 H 0.054 0.946 33 H 0.098 0.902 34 H 0.337 0.663 35 H 0.069 0.931 36 H 0.107 0.893 37 H 0.397 0.603 38 H 0.279 0.721 39 H 0.047 0.953 40 H 0.088 0.912 41 H 0.095 0.905 42 H 0.158 0.842 43 H 0.183 0.817 44 H 0.202 0.798 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.276 -0.441 16.847 24.134 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.031 3.969 3 H 0.098 0.902 4 C -0.077 4.077 5 N -0.320 5.320 6 C -0.066 4.066 7 C 0.222 3.778 8 O -0.514 6.514 9 N -0.207 5.207 10 C -0.467 4.467 11 H 0.093 0.907 12 C -0.210 4.210 13 N -0.559 5.559 14 Si 0.816 3.184 15 H -0.197 1.197 16 H -0.191 1.191 17 H -0.199 1.199 18 N -0.319 5.319 19 C -0.055 4.055 20 C 0.352 3.648 21 O -0.445 6.445 22 C -0.089 4.089 23 C -0.109 4.109 24 C -0.133 4.133 25 C 0.049 3.951 26 F -0.102 7.102 27 C -0.091 4.091 28 N -0.140 5.140 29 H 0.106 0.894 30 H 0.096 0.904 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.116 0.884 34 H 0.156 0.844 35 H 0.086 0.914 36 H 0.125 0.875 37 H 0.231 0.769 38 H 0.088 0.912 39 H 0.066 0.934 40 H 0.106 0.894 41 H 0.113 0.887 42 H 0.176 0.824 43 H 0.200 0.800 44 H 0.219 0.781 Dipole moment (debyes) X Y Z Total from point charges -17.089 0.572 16.284 23.612 hybrid contribution 1.369 -0.801 0.508 1.665 sum -15.720 -0.228 16.792 23.003 Atomic orbital electron populations 1.22026 0.91371 1.03737 1.03402 1.21299 0.95821 0.97167 0.82628 0.90194 1.22461 0.86117 1.00457 0.98620 1.60003 1.10672 1.57354 1.03924 1.21541 0.90233 0.98957 0.95849 1.20941 0.90750 0.82238 0.83847 1.90501 1.72891 1.52926 1.35068 1.41893 1.06827 1.51483 1.20539 1.19610 0.83123 1.37172 1.06777 0.90680 1.26019 1.04896 0.95664 0.94416 1.69660 1.38383 1.38283 1.09587 0.85008 0.76764 0.78589 0.78083 1.19684 1.19137 1.19896 1.47820 1.48653 1.13869 1.21556 1.22184 1.00534 0.78796 1.04008 1.18104 0.78565 0.85904 0.82199 1.90756 1.62114 1.15974 1.75666 1.21171 1.00602 0.90718 0.96392 1.22135 0.93865 1.03008 0.91896 1.21949 0.99268 0.92351 0.99738 1.19156 0.97526 0.90775 0.87674 1.91562 1.83992 1.77766 1.56867 1.23533 0.94343 1.02664 0.88573 1.68127 1.16809 1.06758 1.22337 0.89439 0.90368 0.92346 0.92804 0.88364 0.84421 0.91353 0.87479 0.76873 0.91182 0.93427 0.89405 0.88651 0.82399 0.79954 0.78110 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.15 9.18 71.98 0.66 -1.49 16 2 C 0.13 3.07 2.94 44.99 0.13 3.21 16 3 H 0.08 2.36 6.91 -2.39 -0.02 2.34 16 4 C 0.05 1.23 5.03 86.30 0.43 1.67 16 5 N -0.69 -23.70 6.12 -517.97 -3.17 -26.87 16 6 C 0.07 2.38 6.17 85.56 0.53 2.91 16 7 C 0.43 21.72 7.82 87.66 0.69 22.40 16 8 O -0.63 -37.04 15.78 -3.08 -0.05 -37.09 16 9 N -0.57 -30.12 5.29 -306.98 -1.62 -31.74 16 10 C -0.34 -19.70 9.68 84.04 0.81 -18.89 16 11 H 0.08 4.70 7.16 -2.91 -0.02 4.68 16 12 C -0.01 -0.54 5.50 84.93 0.47 -0.07 16 13 N -0.92 -50.00 13.05 21.66 0.28 -49.72 16 14 Si 0.99 43.65 29.55 68.60 2.03 45.67 16 15 H -0.27 -11.79 7.11 99.48 0.71 -11.08 16 16 H -0.27 -10.94 7.11 99.48 0.71 -10.23 16 17 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 18 N -0.59 -14.42 1.83 -825.77 -1.51 -15.94 16 19 C 0.09 1.61 8.21 127.77 1.05 2.65 16 20 C 0.56 17.03 7.64 86.85 0.66 17.69 16 21 O -0.57 -20.83 15.68 -3.80 -0.06 -20.89 16 22 C 0.05 1.23 6.56 41.89 0.27 1.51 16 23 C -0.09 -1.92 9.63 22.60 0.22 -1.71 16 24 C -0.11 -1.77 10.15 22.48 0.23 -1.54 16 25 C 0.07 1.20 7.36 22.58 0.17 1.37 16 26 F -0.12 -2.07 17.28 44.97 0.78 -1.29 16 27 C 0.07 1.21 11.17 84.90 0.95 2.16 16 28 N -0.43 -9.40 6.17 -184.74 -1.14 -10.54 16 29 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 30 H 0.08 0.87 6.67 -2.39 -0.02 0.85 16 31 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 32 H 0.05 1.03 7.84 -2.39 -0.02 1.01 16 33 H 0.10 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.34 12.90 7.56 -89.69 -0.68 12.22 16 35 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 36 H 0.11 3.41 8.14 -2.39 -0.02 3.39 16 37 H 0.40 19.72 7.90 -92.70 -0.73 18.99 16 38 H 0.28 14.18 8.31 -92.70 -0.77 13.41 16 39 H 0.05 1.02 7.98 -2.39 -0.02 1.00 16 40 H 0.09 1.14 6.44 -2.39 -0.02 1.13 16 41 H 0.10 1.68 5.81 -2.39 -0.01 1.66 16 42 H 0.16 3.36 7.65 -2.91 -0.02 3.34 16 43 H 0.18 1.87 8.06 -2.91 -0.02 1.85 16 44 H 0.20 2.19 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -77.61 376.16 2.46 -75.16 By element: Atomic # 1 Polarization: 41.74 SS G_CDS: -0.35 Total: 41.40 kcal Atomic # 6 Polarization: 24.59 SS G_CDS: 7.27 Total: 31.86 kcal Atomic # 7 Polarization: -127.65 SS G_CDS: -7.16 Total: -134.82 kcal Atomic # 8 Polarization: -57.87 SS G_CDS: -0.11 Total: -57.98 kcal Atomic # 9 Polarization: -2.07 SS G_CDS: 0.78 Total: -1.29 kcal Atomic # 14 Polarization: 43.65 SS G_CDS: 2.03 Total: 45.67 kcal Total: -77.61 2.46 -75.16 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319448344.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.195 kcal (2) G-P(sol) polarization free energy of solvation -77.614 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.809 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.157 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds