Wall clock time and date at job start Tue Mar 31 2020 20:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36213 * 116.99829 * 2 1 4 4 C 1.34081 * 122.50092 * 0.02562 * 3 2 1 5 5 S 1.70604 * 110.97214 * 180.02562 * 4 3 2 6 6 C 1.75810 * 91.62324 * 359.97438 * 5 4 3 7 7 C 1.46544 * 125.42868 * 180.02562 * 6 5 4 8 8 O 1.21706 * 120.00297 * 134.84948 * 7 6 5 9 9 N 1.34775 * 119.99692 * 314.84728 * 7 6 5 10 10 C 1.46925 * 120.63209 * 3.59014 * 9 7 6 11 11 C 1.53197 * 108.77737 * 233.58591 * 10 9 7 12 12 C 1.53043 * 109.30865 * 305.36358 * 11 10 9 13 13 C 1.53032 * 109.53826 * 61.36567 * 12 11 10 14 14 H 1.09001 * 109.50454 * 58.61746 * 13 12 11 15 15 C 1.53005 * 109.49735 * 178.67876 * 13 12 11 16 16 H 1.09004 * 109.46743 * 60.00573 * 15 13 12 17 17 C 1.52998 * 109.47184 * 299.99992 * 15 13 12 18 18 N 1.46502 * 109.46861 * 179.97438 * 15 13 12 19 19 C 1.36938 * 119.99838 * 204.99590 * 18 15 13 20 20 H 1.07998 * 120.00381 * 0.02562 * 19 18 15 21 21 C 1.38814 * 119.99703 * 180.02562 * 19 18 15 22 22 N 1.31615 * 120.00162 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99620 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47305 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46756 * 120.00431 * 23 21 19 26 26 H 1.48498 * 109.47125 * 239.99849 * 23 21 19 27 27 C 1.46930 * 120.63240 * 183.30643 * 9 7 6 28 28 C 1.36742 * 109.14286 * 359.74324 * 6 5 4 29 29 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46883 * 60.00065 * 1 2 3 31 31 H 1.08996 * 109.47563 * 300.00346 * 1 2 3 32 32 H 1.08002 * 124.51412 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.58604 * 353.37433 * 10 9 7 34 34 H 1.09001 * 109.58820 * 113.79502 * 10 9 7 35 35 H 1.08995 * 109.49376 * 65.31292 * 11 10 9 36 36 H 1.08999 * 109.49999 * 185.41425 * 11 10 9 37 37 H 1.09003 * 109.45556 * 181.38343 * 12 11 10 38 38 H 1.09000 * 109.46325 * 301.35577 * 12 11 10 39 39 H 1.08996 * 109.47054 * 59.99758 * 17 15 13 40 40 H 1.08997 * 109.46956 * 179.97438 * 17 15 13 41 41 H 1.09002 * 109.47037 * 299.99777 * 17 15 13 42 42 H 0.97001 * 120.00028 * 25.00744 * 18 15 13 43 43 H 0.97005 * 119.99399 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.58739 * 246.20165 * 27 9 7 45 45 H 1.09000 * 109.58257 * 6.63151 * 27 9 7 46 46 H 1.08007 * 123.36772 * 180.23977 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3690 0.0005 5 16 2.4295 3.7036 -0.0004 6 6 3.8354 2.6479 -0.0006 7 6 5.2317 3.0927 -0.0009 8 8 6.0373 2.5691 0.7462 9 7 5.6238 4.0815 -0.8284 10 6 4.6482 4.7766 -1.6793 11 6 5.1328 4.7212 -3.1316 12 6 6.5529 5.2860 -3.2130 13 6 7.4926 4.4334 -2.3575 14 1 7.4703 3.4021 -2.7097 15 6 8.9179 4.9791 -2.4657 16 1 8.9401 6.0100 -2.1122 17 6 9.3731 4.9306 -3.9256 18 7 9.8169 4.1629 -1.6460 19 6 10.9807 4.6999 -1.1640 20 1 11.2358 5.7252 -1.3878 21 6 11.8327 3.9263 -0.3877 22 7 11.5222 2.6766 -0.1154 23 14 13.4200 4.6590 0.2704 24 1 13.5349 6.0713 -0.1740 25 1 13.4114 4.6066 1.7544 26 1 14.5753 3.8817 -0.2456 27 6 7.0339 4.4893 -0.8923 28 6 3.4182 1.3457 0.0057 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 0.2895 2.4445 0.0006 33 1 3.6782 4.2860 -1.5988 34 1 4.5618 5.8158 -1.3622 35 1 5.1322 3.6872 -3.4761 36 1 4.4686 5.3149 -3.7596 37 1 6.8909 5.2705 -4.2492 38 1 6.5574 6.3119 -2.8449 39 1 8.7041 5.5381 -4.5351 40 1 10.3883 5.3198 -4.0028 41 1 9.3509 3.8997 -4.2790 42 1 9.5877 3.2421 -1.4448 43 1 12.1178 2.1360 0.4268 44 1 7.1380 5.5056 -0.5125 45 1 7.6385 3.8090 -0.2925 46 1 4.0961 0.5048 0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001319819076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:16 Heat of formation + Delta-G solvation = -23.110930 kcal Electronic energy + Delta-G solvation = -27397.361747 eV Core-core repulsion = 23607.628578 eV Total energy + Delta-G solvation = -3789.733169 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -40.35277 -39.81996 -37.81648 -35.97838 -35.44001 -32.96436 -31.75341 -30.39730 -29.33784 -28.30275 -28.02289 -25.68305 -24.62555 -23.49854 -22.94115 -21.47000 -20.42439 -19.54085 -19.18528 -18.22104 -17.37647 -17.05597 -16.50646 -16.06876 -15.83299 -15.15419 -14.85029 -14.77746 -14.46647 -14.05488 -13.89401 -13.66609 -13.28234 -13.19978 -13.06713 -12.93785 -12.71226 -12.59543 -12.31662 -12.02248 -11.99175 -11.42229 -11.32619 -11.24705 -11.01160 -10.90224 -10.83149 -10.68312 -10.56843 -10.24165 -10.12272 -9.93257 -9.70163 -9.51406 -9.12181 -8.85758 -8.47507 -8.17435 -6.88136 -5.67680 -2.97016 0.36001 1.12595 1.63307 2.27226 2.75385 3.11940 3.25157 3.48607 3.53491 3.56391 4.43176 4.62970 4.67208 4.69376 4.76023 4.80618 4.91926 5.00503 5.03455 5.12483 5.24293 5.36103 5.43543 5.49256 5.63829 5.69643 5.70734 5.79024 5.81500 5.85864 5.94240 6.03100 6.14015 6.22142 6.24498 6.44952 6.49769 6.52456 6.72379 6.75281 6.93069 6.94769 7.13425 7.45918 7.77596 8.20424 8.49794 9.61044 10.18813 10.53094 11.54547 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.002820 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.583011 B = 9926.747895 C =10924.803637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.305 6.305 3 C 0.110 3.890 4 C -0.360 4.360 5 S 0.234 5.766 6 C -0.221 4.221 7 C 0.582 3.418 8 O -0.509 6.509 9 N -0.602 5.602 10 C 0.092 3.908 11 C -0.131 4.131 12 C -0.115 4.115 13 C -0.103 4.103 14 H 0.071 0.929 15 C 0.180 3.820 16 H 0.047 0.953 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.928 5.928 23 Si 0.903 3.097 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.124 3.876 28 C -0.082 4.082 29 H 0.100 0.900 30 H 0.054 0.946 31 H 0.054 0.946 32 H 0.169 0.831 33 H 0.084 0.916 34 H 0.073 0.927 35 H 0.067 0.933 36 H 0.073 0.927 37 H 0.071 0.929 38 H 0.064 0.936 39 H 0.038 0.962 40 H 0.052 0.948 41 H 0.045 0.955 42 H 0.384 0.616 43 H 0.254 0.746 44 H 0.068 0.932 45 H 0.109 0.891 46 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.714 2.423 -4.921 27.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.219 6.219 3 C 0.053 3.947 4 C -0.497 4.497 5 S 0.500 5.500 6 C -0.342 4.342 7 C 0.367 3.633 8 O -0.385 6.385 9 N -0.335 5.335 10 C -0.032 4.032 11 C -0.169 4.169 12 C -0.153 4.153 13 C -0.123 4.123 14 H 0.089 0.911 15 C 0.070 3.930 16 H 0.065 0.935 17 C -0.225 4.225 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.576 5.576 23 Si 0.735 3.265 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.220 1.220 27 C 0.003 3.997 28 C -0.115 4.115 29 H 0.119 0.881 30 H 0.072 0.928 31 H 0.072 0.928 32 H 0.186 0.814 33 H 0.101 0.899 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.092 0.908 37 H 0.089 0.911 38 H 0.082 0.918 39 H 0.057 0.943 40 H 0.071 0.929 41 H 0.064 0.936 42 H 0.218 0.782 43 H 0.064 0.936 44 H 0.086 0.914 45 H 0.127 0.873 46 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -26.287 3.613 -4.431 26.902 hybrid contribution 0.546 -1.476 0.365 1.616 sum -25.741 2.137 -4.066 26.148 Atomic orbital electron populations 1.23034 0.78292 1.03969 1.01207 1.86131 1.21207 1.25254 1.89340 1.17527 0.91450 0.84714 1.00974 1.25125 1.05770 0.98007 1.20825 1.83001 0.92029 1.06292 1.68656 1.24493 0.98160 0.97474 1.14090 1.16948 0.85344 0.79972 0.80990 1.90938 1.52833 1.55369 1.39336 1.48077 1.10058 1.35118 1.40238 1.22137 0.92266 0.97631 0.91175 1.21895 0.97661 1.02150 0.95235 1.21641 0.93637 0.99296 1.00744 1.21853 0.95982 1.00288 0.94201 0.91057 1.20173 0.87133 0.94988 0.90732 0.93489 1.22480 1.00794 1.00510 0.98679 1.42464 1.21667 1.12808 1.59650 1.19227 0.96594 0.96118 1.24984 0.91245 1.24738 0.99009 0.96054 1.01078 1.69678 1.37928 1.07083 1.42941 0.86177 0.83835 0.77996 0.78527 1.20655 1.21935 1.22010 1.21871 0.78584 1.01488 0.97743 1.19901 0.92997 0.96709 1.01923 0.88139 0.92785 0.92787 0.81362 0.89855 0.90864 0.91463 0.90822 0.91071 0.91775 0.94289 0.92884 0.93610 0.78180 0.93583 0.91371 0.87265 0.82210 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.19 9.93 101.05 1.00 1.19 16 2 O -0.31 -3.25 10.56 -20.42 -0.22 -3.47 16 3 C 0.11 1.24 6.61 -41.23 -0.27 0.97 16 4 C -0.36 -3.29 9.81 29.27 0.29 -3.00 16 5 S 0.23 2.20 19.89 -107.50 -2.14 0.06 16 6 C -0.22 -2.95 5.48 -36.78 -0.20 -3.16 16 7 C 0.58 9.73 7.54 -12.91 -0.10 9.63 16 8 O -0.51 -10.92 16.51 5.18 0.09 -10.83 16 9 N -0.60 -8.91 2.97 -174.09 -0.52 -9.43 16 10 C 0.09 0.98 5.88 -3.71 -0.02 0.96 16 11 C -0.13 -1.32 6.08 -26.61 -0.16 -1.48 16 12 C -0.12 -1.38 4.85 -26.69 -0.13 -1.51 16 13 C -0.10 -1.66 1.99 -90.27 -0.18 -1.83 16 14 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 15 C 0.18 3.46 2.47 -67.93 -0.17 3.29 16 16 H 0.05 0.91 8.08 -51.93 -0.42 0.49 16 17 C -0.16 -2.89 9.14 37.16 0.34 -2.55 16 18 N -0.72 -18.02 4.53 -53.42 -0.24 -18.26 16 19 C -0.24 -6.60 9.93 -15.06 -0.15 -6.75 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 22 N -0.93 -28.77 13.06 55.49 0.72 -28.04 16 23 Si 0.90 22.82 29.55 -169.99 -5.02 17.80 16 24 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.47 7.11 56.52 0.40 -7.07 16 26 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 27 C 0.12 2.14 5.49 -3.48 -0.02 2.12 16 28 C -0.08 -1.06 10.23 -40.31 -0.41 -1.48 16 29 H 0.10 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.05 0.27 7.84 -51.93 -0.41 -0.14 16 31 H 0.05 0.28 7.84 -51.93 -0.41 -0.13 16 32 H 0.17 1.10 6.96 -52.49 -0.37 0.73 16 33 H 0.08 0.79 4.00 -30.17 -0.12 0.67 16 34 H 0.07 0.68 8.14 -51.93 -0.42 0.25 16 35 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.82 6.36 -51.93 -0.33 0.48 16 38 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 39 H 0.04 0.56 6.40 -51.93 -0.33 0.22 16 40 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 41 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 42 H 0.38 10.43 7.63 -40.82 -0.31 10.12 16 43 H 0.25 7.66 8.31 -40.82 -0.34 7.32 16 44 H 0.07 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.11 2.39 6.55 -51.93 -0.34 2.05 16 46 H 0.16 2.13 8.06 -52.48 -0.42 1.70 16 LS Contribution 378.46 15.07 5.70 5.70 Total: -1.00 -33.84 378.46 -8.71 -42.55 By element: Atomic # 1 Polarization: 14.79 SS G_CDS: -6.81 Total: 7.98 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: -0.28 Total: -4.06 kcal Atomic # 7 Polarization: -55.70 SS G_CDS: -0.03 Total: -55.73 kcal Atomic # 8 Polarization: -14.17 SS G_CDS: -0.13 Total: -14.30 kcal Atomic # 14 Polarization: 22.82 SS G_CDS: -5.02 Total: 17.80 kcal Atomic # 16 Polarization: 2.20 SS G_CDS: -2.14 Total: 0.06 kcal Total LS contribution 5.70 Total: 5.70 kcal Total: -33.84 -8.71 -42.55 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319819076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 19.440 kcal (2) G-P(sol) polarization free energy of solvation -33.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.402 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.551 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.111 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds