Wall clock time and date at job start Tue Mar 31 2020 20:38:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.36213 * 116.99829 * 2 1 4 4 C 1.34081 * 122.50092 * 0.02562 * 3 2 1 5 5 S 1.70604 * 110.97214 * 180.02562 * 4 3 2 6 6 C 1.75810 * 91.62324 * 359.97438 * 5 4 3 7 7 C 1.46544 * 125.42868 * 180.02562 * 6 5 4 8 8 O 1.21706 * 120.00297 * 134.84948 * 7 6 5 9 9 N 1.34775 * 119.99692 * 314.84728 * 7 6 5 10 10 C 1.46925 * 120.63209 * 3.59014 * 9 7 6 11 11 C 1.53197 * 108.77737 * 233.58591 * 10 9 7 12 12 C 1.53043 * 109.30865 * 305.36358 * 11 10 9 13 13 C 1.53032 * 109.53826 * 61.36567 * 12 11 10 14 14 H 1.09001 * 109.50454 * 58.61746 * 13 12 11 15 15 C 1.53005 * 109.49735 * 178.67876 * 13 12 11 16 16 H 1.09004 * 109.46743 * 60.00573 * 15 13 12 17 17 C 1.52998 * 109.47184 * 299.99992 * 15 13 12 18 18 N 1.46502 * 109.46861 * 179.97438 * 15 13 12 19 19 C 1.36938 * 119.99838 * 204.99590 * 18 15 13 20 20 H 1.07998 * 120.00381 * 0.02562 * 19 18 15 21 21 C 1.38814 * 119.99703 * 180.02562 * 19 18 15 22 22 N 1.31615 * 120.00162 * 0.02562 * 21 19 18 23 23 Si 1.86804 * 119.99620 * 180.02562 * 21 19 18 24 24 H 1.48497 * 109.47305 * 0.02562 * 23 21 19 25 25 H 1.48503 * 109.46756 * 120.00431 * 23 21 19 26 26 H 1.48498 * 109.47125 * 239.99849 * 23 21 19 27 27 C 1.46930 * 120.63240 * 183.30643 * 9 7 6 28 28 C 1.36742 * 109.14286 * 359.74324 * 6 5 4 29 29 H 1.08997 * 109.47333 * 179.97438 * 1 2 3 30 30 H 1.09006 * 109.46883 * 60.00065 * 1 2 3 31 31 H 1.08996 * 109.47563 * 300.00346 * 1 2 3 32 32 H 1.08002 * 124.51412 * 359.97438 * 4 3 2 33 33 H 1.09003 * 109.58604 * 353.37433 * 10 9 7 34 34 H 1.09001 * 109.58820 * 113.79502 * 10 9 7 35 35 H 1.08995 * 109.49376 * 65.31292 * 11 10 9 36 36 H 1.08999 * 109.49999 * 185.41425 * 11 10 9 37 37 H 1.09003 * 109.45556 * 181.38343 * 12 11 10 38 38 H 1.09000 * 109.46325 * 301.35577 * 12 11 10 39 39 H 1.08996 * 109.47054 * 59.99758 * 17 15 13 40 40 H 1.08997 * 109.46956 * 179.97438 * 17 15 13 41 41 H 1.09002 * 109.47037 * 299.99777 * 17 15 13 42 42 H 0.97001 * 120.00028 * 25.00744 * 18 15 13 43 43 H 0.97005 * 119.99399 * 179.97438 * 22 21 19 44 44 H 1.08993 * 109.58739 * 246.20165 * 27 9 7 45 45 H 1.09000 * 109.58257 * 6.63151 * 27 9 7 46 46 H 1.08007 * 123.36772 * 180.23977 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0474 1.2137 0.0000 4 6 1.3668 2.3690 0.0005 5 16 2.4295 3.7036 -0.0004 6 6 3.8354 2.6479 -0.0006 7 6 5.2317 3.0927 -0.0009 8 8 6.0373 2.5691 0.7462 9 7 5.6238 4.0815 -0.8284 10 6 4.6482 4.7766 -1.6793 11 6 5.1328 4.7212 -3.1316 12 6 6.5529 5.2860 -3.2130 13 6 7.4926 4.4334 -2.3575 14 1 7.4703 3.4021 -2.7097 15 6 8.9179 4.9791 -2.4657 16 1 8.9401 6.0100 -2.1122 17 6 9.3731 4.9306 -3.9256 18 7 9.8169 4.1629 -1.6460 19 6 10.9807 4.6999 -1.1640 20 1 11.2358 5.7252 -1.3878 21 6 11.8327 3.9263 -0.3877 22 7 11.5222 2.6766 -0.1154 23 14 13.4200 4.6590 0.2704 24 1 13.5349 6.0713 -0.1740 25 1 13.4114 4.6066 1.7544 26 1 14.5753 3.8817 -0.2456 27 6 7.0339 4.4893 -0.8923 28 6 3.4182 1.3457 0.0057 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 -0.8901 31 1 -0.3634 0.5139 0.8899 32 1 0.2895 2.4445 0.0006 33 1 3.6782 4.2860 -1.5988 34 1 4.5618 5.8158 -1.3622 35 1 5.1322 3.6872 -3.4761 36 1 4.4686 5.3149 -3.7596 37 1 6.8909 5.2705 -4.2492 38 1 6.5574 6.3119 -2.8449 39 1 8.7041 5.5381 -4.5351 40 1 10.3883 5.3198 -4.0028 41 1 9.3509 3.8997 -4.2790 42 1 9.5877 3.2421 -1.4448 43 1 12.1178 2.1360 0.4268 44 1 7.1380 5.5056 -0.5125 45 1 7.6385 3.8090 -0.2925 46 1 4.0961 0.5048 0.0106 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319819076.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:16 Heat of formation + Delta-G solvation = -46.191629 kcal Electronic energy + Delta-G solvation = -27398.362601 eV Core-core repulsion = 23607.628578 eV Total energy + Delta-G solvation = -3790.734023 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.47283 -40.69472 -39.14105 -36.99867 -36.85630 -34.67397 -33.16328 -31.74499 -30.64756 -29.62368 -28.74519 -26.81383 -26.11381 -24.97542 -24.12215 -22.57534 -21.57963 -20.93881 -20.13424 -19.34231 -19.04214 -18.12084 -17.60100 -16.96986 -16.78125 -16.71680 -16.35877 -15.63652 -15.57322 -15.51242 -15.35719 -15.01065 -14.57245 -14.32062 -14.13114 -13.95584 -13.84557 -13.71954 -13.67397 -13.38690 -13.01204 -12.81766 -12.60971 -12.55804 -12.37017 -12.16039 -12.10041 -12.05146 -11.89943 -11.73604 -11.64179 -11.43276 -11.22966 -11.04616 -10.92441 -10.03362 -9.69081 -8.97624 -8.93852 -7.90491 -5.18884 -0.56906 0.24351 0.82094 1.33192 1.45271 1.46992 1.56560 1.64432 2.01186 2.46284 2.57356 3.42571 3.43422 3.72728 3.84521 3.91894 3.93781 4.09157 4.10896 4.20409 4.27285 4.38755 4.41695 4.42666 4.55778 4.58892 4.63490 4.74636 4.77256 4.78300 4.87575 4.91537 4.92514 4.99964 5.04880 5.07629 5.17600 5.29667 5.38555 5.45751 5.51282 5.57821 5.65860 6.23839 6.28822 6.30742 6.95450 7.35733 8.14167 8.35403 9.33381 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.016413 B = 0.002820 C = 0.002562 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1705.583011 B = 9926.747895 C =10924.803637 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.330 6.330 3 C 0.092 3.908 4 C -0.339 4.339 5 S 0.313 5.687 6 C -0.260 4.260 7 C 0.576 3.424 8 O -0.578 6.578 9 N -0.597 5.597 10 C 0.083 3.917 11 C -0.126 4.126 12 C -0.109 4.109 13 C -0.090 4.090 14 H 0.049 0.951 15 C 0.173 3.827 16 H 0.051 0.949 17 C -0.154 4.154 18 N -0.738 5.738 19 C -0.228 4.228 20 H 0.080 0.920 21 C -0.083 4.083 22 N -0.973 5.973 23 Si 0.969 3.031 24 H -0.261 1.261 25 H -0.299 1.299 26 H -0.296 1.296 27 C 0.130 3.870 28 C -0.094 4.094 29 H 0.115 0.885 30 H 0.070 0.930 31 H 0.066 0.934 32 H 0.204 0.796 33 H 0.099 0.901 34 H 0.100 0.900 35 H 0.056 0.944 36 H 0.117 0.883 37 H 0.085 0.915 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.034 0.966 41 H 0.034 0.966 42 H 0.367 0.633 43 H 0.247 0.753 44 H 0.074 0.926 45 H 0.051 0.949 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -30.389 5.537 -6.859 31.642 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.245 6.245 3 C 0.036 3.964 4 C -0.476 4.476 5 S 0.580 5.420 6 C -0.381 4.381 7 C 0.364 3.636 8 O -0.459 6.459 9 N -0.328 5.328 10 C -0.038 4.038 11 C -0.163 4.163 12 C -0.147 4.147 13 C -0.110 4.110 14 H 0.067 0.933 15 C 0.064 3.936 16 H 0.069 0.931 17 C -0.213 4.213 18 N -0.378 5.378 19 C -0.360 4.360 20 H 0.097 0.903 21 C -0.275 4.275 22 N -0.624 5.624 23 Si 0.799 3.201 24 H -0.185 1.185 25 H -0.227 1.227 26 H -0.224 1.224 27 C 0.008 3.992 28 C -0.129 4.129 29 H 0.134 0.866 30 H 0.088 0.912 31 H 0.084 0.916 32 H 0.221 0.779 33 H 0.116 0.884 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.135 0.865 37 H 0.104 0.896 38 H 0.100 0.900 39 H 0.101 0.899 40 H 0.053 0.947 41 H 0.053 0.947 42 H 0.198 0.802 43 H 0.056 0.944 44 H 0.092 0.908 45 H 0.070 0.930 46 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -30.022 6.818 -6.446 31.454 hybrid contribution 1.512 -2.398 0.925 2.982 sum -28.510 4.420 -5.520 29.374 Atomic orbital electron populations 1.23358 0.75964 1.05602 1.02501 1.86106 1.23658 1.25185 1.89573 1.17384 0.90669 0.85853 1.02527 1.25578 1.07473 0.97131 1.17461 1.82603 0.88656 1.04260 1.66475 1.24178 0.97936 0.98932 1.17007 1.17503 0.86467 0.79508 0.80170 1.90890 1.55140 1.57679 1.42221 1.48152 1.09743 1.34779 1.40142 1.22552 0.91681 0.98629 0.90980 1.21910 0.97025 1.02285 0.95129 1.21637 0.93603 0.99116 1.00300 1.21701 0.95255 0.99951 0.94133 0.93281 1.20488 0.87927 0.94275 0.90887 0.93092 1.22322 1.00709 1.00646 0.97654 1.42723 1.21983 1.12592 1.60501 1.19656 0.96916 0.96232 1.23218 0.90254 1.25577 1.02714 0.96589 1.02610 1.69868 1.39199 1.08737 1.44642 0.85116 0.79701 0.78108 0.77151 1.18490 1.22678 1.22353 1.21547 0.79764 1.00044 0.97837 1.19916 0.94255 0.96284 1.02470 0.86627 0.91180 0.91575 0.77869 0.88377 0.88180 0.92536 0.86517 0.89625 0.90017 0.89874 0.94675 0.94671 0.80200 0.94443 0.90765 0.93029 0.84487 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.93 113.37 1.13 1.32 16 2 O -0.33 -6.76 10.56 -95.98 -1.01 -7.78 16 3 C 0.09 1.97 6.61 21.20 0.14 2.11 16 4 C -0.34 -5.04 9.81 66.87 0.66 -4.39 16 5 S 0.31 4.91 19.89 -56.49 -1.12 3.79 16 6 C -0.26 -7.05 5.48 24.09 0.13 -6.92 16 7 C 0.58 20.53 7.54 86.41 0.65 21.18 16 8 O -0.58 -27.59 16.51 -4.37 -0.07 -27.66 16 9 N -0.60 -17.96 2.97 -822.90 -2.44 -20.40 16 10 C 0.08 1.53 5.88 86.36 0.51 2.04 16 11 C -0.13 -2.04 6.08 30.67 0.19 -1.85 16 12 C -0.11 -2.24 4.85 30.62 0.15 -2.09 16 13 C -0.09 -2.91 1.99 -10.57 -0.02 -2.93 16 14 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 15 C 0.17 6.63 2.47 44.99 0.11 6.74 16 16 H 0.05 1.93 8.08 -2.38 -0.02 1.91 16 17 C -0.15 -5.21 9.14 71.98 0.66 -4.55 16 18 N -0.74 -38.35 4.53 -322.92 -1.46 -39.81 16 19 C -0.23 -12.97 9.93 84.03 0.83 -12.14 16 20 H 0.08 4.27 7.83 -2.91 -0.02 4.25 16 21 C -0.08 -5.01 5.50 84.86 0.47 -4.54 16 22 N -0.97 -63.66 13.06 21.65 0.28 -63.38 16 23 Si 0.97 48.31 29.55 68.60 2.03 50.34 16 24 H -0.26 -11.95 7.11 99.48 0.71 -11.25 16 25 H -0.30 -15.11 7.11 99.48 0.71 -14.40 16 26 H -0.30 -14.77 7.11 99.48 0.71 -14.07 16 27 C 0.13 4.72 5.49 86.51 0.48 5.20 16 28 C -0.09 -2.58 10.23 21.80 0.22 -2.36 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.46 7.84 -2.38 -0.02 0.44 16 31 H 0.07 0.48 7.84 -2.39 -0.02 0.46 16 32 H 0.20 1.56 6.96 -2.91 -0.02 1.54 16 33 H 0.10 1.51 4.00 -16.22 -0.06 1.44 16 34 H 0.10 1.38 8.14 -2.39 -0.02 1.36 16 35 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.12 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.09 1.57 6.36 -2.39 -0.02 1.55 16 38 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 39 H 0.08 2.08 6.40 -2.39 -0.02 2.07 16 40 H 0.03 1.30 8.14 -2.39 -0.02 1.28 16 41 H 0.03 1.25 8.14 -2.39 -0.02 1.23 16 42 H 0.37 21.41 7.63 -92.71 -0.71 20.70 16 43 H 0.25 15.75 8.31 -92.70 -0.77 14.98 16 44 H 0.07 2.53 8.14 -2.39 -0.02 2.51 16 45 H 0.05 2.49 6.55 -2.39 -0.02 2.47 16 46 H 0.14 4.19 8.06 -2.91 -0.02 4.16 16 Total: -1.00 -82.14 378.46 2.73 -79.42 By element: Atomic # 1 Polarization: 28.42 SS G_CDS: 0.23 Total: 28.65 kcal Atomic # 6 Polarization: -9.46 SS G_CDS: 6.30 Total: -3.17 kcal Atomic # 7 Polarization: -119.97 SS G_CDS: -3.62 Total: -123.59 kcal Atomic # 8 Polarization: -34.35 SS G_CDS: -1.09 Total: -35.44 kcal Atomic # 14 Polarization: 48.31 SS G_CDS: 2.03 Total: 50.34 kcal Atomic # 16 Polarization: 4.91 SS G_CDS: -1.12 Total: 3.79 kcal Total: -82.14 2.73 -79.42 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319819076.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.226 kcal (2) G-P(sol) polarization free energy of solvation -82.145 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -48.919 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.727 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.418 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds