Wall clock time and date at job start Tue Mar 31 2020 20:38:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42892 * 1 3 3 C 1.36214 * 116.99998 * 2 1 4 4 C 1.34078 * 122.50281 * 359.96870 * 3 2 1 5 5 S 1.70600 * 110.97777 * 180.26901 * 4 3 2 6 6 C 1.75813 * 91.61979 * 359.68503 * 5 4 3 7 7 C 1.46547 * 125.42559 * 180.02562 * 6 5 4 8 8 O 1.21714 * 119.99703 * 210.95091 * 7 6 5 9 9 N 1.34776 * 120.00166 * 30.95829 * 7 6 5 10 10 C 1.46927 * 120.62603 * 6.35343 * 9 7 6 11 11 C 1.53193 * 108.77569 * 126.37074 * 10 9 7 12 12 C 1.53040 * 109.31106 * 54.63115 * 11 10 9 13 13 C 1.53045 * 109.53884 * 298.63462 * 12 11 10 14 14 H 1.09001 * 109.49541 * 301.38363 * 13 12 11 15 15 C 1.52997 * 109.49520 * 181.32105 * 13 12 11 16 16 H 1.08997 * 109.47414 * 60.00302 * 15 13 12 17 17 C 1.53003 * 109.47250 * 299.99508 * 15 13 12 18 18 N 1.46501 * 109.46823 * 180.02562 * 15 13 12 19 19 C 1.36941 * 119.99722 * 205.00198 * 18 15 13 20 20 H 1.08003 * 120.00035 * 359.97438 * 19 18 15 21 21 C 1.38812 * 119.99911 * 180.02562 * 19 18 15 22 22 N 1.31626 * 120.00105 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 120.00158 * 179.97438 * 21 19 18 24 24 H 1.48500 * 109.47313 * 359.97438 * 23 21 19 25 25 H 1.48503 * 109.47309 * 119.99430 * 23 21 19 26 26 H 1.48501 * 109.47266 * 239.99329 * 23 21 19 27 27 C 1.46923 * 120.63284 * 186.07252 * 9 7 6 28 28 C 1.36746 * 109.14611 * 0.31165 * 6 5 4 29 29 H 1.08994 * 109.47373 * 180.02562 * 1 2 3 30 30 H 1.09002 * 109.47211 * 300.00444 * 1 2 3 31 31 H 1.09005 * 109.47205 * 60.00308 * 1 2 3 32 32 H 1.08002 * 124.51210 * 0.02562 * 4 3 2 33 33 H 1.09001 * 109.57940 * 246.15520 * 10 9 7 34 34 H 1.08998 * 109.58908 * 6.43530 * 10 9 7 35 35 H 1.08997 * 109.49427 * 174.58157 * 11 10 9 36 36 H 1.08997 * 109.49713 * 294.68004 * 11 10 9 37 37 H 1.08997 * 109.46347 * 58.66042 * 12 11 10 38 38 H 1.09006 * 109.46024 * 178.61781 * 12 11 10 39 39 H 1.08997 * 109.47560 * 300.00704 * 17 15 13 40 40 H 1.09004 * 109.46622 * 60.00696 * 17 15 13 41 41 H 1.08998 * 109.47249 * 180.02562 * 17 15 13 42 42 H 0.96996 * 120.00580 * 24.99258 * 18 15 13 43 43 H 0.97002 * 119.99808 * 180.02562 * 22 21 19 44 44 H 1.09000 * 109.58495 * 353.41619 * 27 9 7 45 45 H 1.08997 * 109.58939 * 113.84029 * 27 9 7 46 46 H 1.07993 * 123.36946 * 179.73848 * 28 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0473 1.2137 0.0000 4 6 1.3669 2.3690 -0.0006 5 16 2.4295 3.7036 -0.0079 6 6 3.8353 2.6479 -0.0005 7 6 5.2317 3.0927 -0.0016 8 8 6.0864 2.4130 -0.5390 9 7 5.5694 4.2544 0.5925 10 6 4.5779 5.0165 1.3639 11 6 5.1430 5.2874 2.7618 12 6 6.5037 5.9759 2.6330 13 6 7.4746 5.0557 1.8895 14 1 7.5716 4.1151 2.4315 15 6 8.8437 5.7314 1.7902 16 1 9.2253 5.9283 2.7920 17 6 8.7072 7.0509 1.0278 18 7 9.7725 4.8503 1.0778 19 6 11.1207 4.9611 1.2907 20 1 11.4993 5.6982 1.9833 21 6 12.0008 4.1267 0.6153 22 7 11.5394 3.2286 -0.2292 23 14 13.8399 4.2782 0.9051 24 1 14.0983 5.3561 1.8932 25 1 14.3666 2.9914 1.4267 26 1 14.5172 4.6077 -0.3748 27 6 6.9374 4.7795 0.4864 28 6 3.4183 1.3456 0.0001 29 1 -0.3634 -1.0276 0.0005 30 1 -0.3634 0.5139 0.8900 31 1 -0.3634 0.5138 -0.8900 32 1 0.2895 2.4446 -0.0008 33 1 4.3739 5.9627 0.8625 34 1 3.6565 4.4400 1.4452 35 1 4.4588 5.9336 3.3117 36 1 5.2615 4.3444 3.2953 37 1 6.3885 6.9069 2.0779 38 1 6.8968 6.1920 3.6264 39 1 8.3257 6.8540 0.0259 40 1 8.0161 7.7066 1.5574 41 1 9.6827 7.5320 0.9566 42 1 9.4325 4.1885 0.4556 43 1 12.1544 2.6453 -0.7008 44 1 7.5732 4.0455 -0.0087 45 1 6.9298 5.7059 -0.0879 46 1 4.0960 0.5048 0.0001 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001319819077.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:38:18 Heat of formation + Delta-G solvation = -43.558205 kcal Electronic energy + Delta-G solvation = -27421.394682 eV Core-core repulsion = 23630.774853 eV Total energy + Delta-G solvation = -3790.619829 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.51730 -40.72172 -39.23777 -36.99842 -36.82860 -34.70681 -33.23861 -31.72197 -30.60331 -29.33607 -28.75037 -26.93244 -26.28807 -24.94333 -24.54511 -22.56580 -21.86742 -20.32033 -20.00795 -19.48161 -19.03143 -18.11980 -17.49873 -17.05411 -16.80957 -16.68287 -16.27042 -15.92035 -15.53442 -15.51095 -15.34501 -15.13492 -14.60005 -14.46641 -14.06315 -13.93900 -13.85944 -13.77544 -13.65331 -13.34444 -12.96685 -12.86962 -12.66075 -12.60122 -12.43319 -12.16022 -12.02546 -11.97826 -11.78409 -11.76930 -11.65539 -11.43914 -11.20186 -11.04476 -10.92787 -10.04112 -9.65703 -8.99662 -8.92484 -7.91454 -5.20865 -0.62246 0.29931 0.83283 1.30900 1.44897 1.46681 1.56569 1.70024 2.01917 2.46402 2.56629 3.41263 3.42676 3.73740 3.85462 3.90911 3.94099 4.05970 4.11157 4.16717 4.26348 4.38646 4.39148 4.42325 4.53589 4.56879 4.64354 4.71717 4.74992 4.79123 4.81493 4.86295 4.91664 5.00708 5.11658 5.14448 5.16127 5.26527 5.37815 5.44183 5.49111 5.56138 5.71701 6.23344 6.29184 6.29868 6.96120 7.34575 8.13911 8.34354 9.32223 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017755 B = 0.002748 C = 0.002467 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1576.675697 B =10187.276571 C =11347.103737 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.020 3.980 2 O -0.331 6.331 3 C 0.088 3.912 4 C -0.341 4.341 5 S 0.325 5.675 6 C -0.267 4.267 7 C 0.575 3.425 8 O -0.579 6.579 9 N -0.599 5.599 10 C 0.083 3.917 11 C -0.126 4.126 12 C -0.108 4.108 13 C -0.093 4.093 14 H 0.041 0.959 15 C 0.172 3.828 16 H 0.048 0.952 17 C -0.157 4.157 18 N -0.742 5.742 19 C -0.232 4.232 20 H 0.080 0.920 21 C -0.084 4.084 22 N -0.974 5.974 23 Si 0.973 3.027 24 H -0.261 1.261 25 H -0.297 1.297 26 H -0.295 1.295 27 C 0.125 3.875 28 C -0.089 4.089 29 H 0.115 0.885 30 H 0.069 0.931 31 H 0.066 0.934 32 H 0.204 0.796 33 H 0.105 0.895 34 H 0.099 0.901 35 H 0.119 0.881 36 H 0.052 0.948 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.043 0.957 40 H 0.085 0.915 41 H 0.033 0.967 42 H 0.369 0.631 43 H 0.248 0.752 44 H 0.048 0.952 45 H 0.087 0.913 46 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.064 5.912 5.320 32.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.247 6.247 3 C 0.032 3.968 4 C -0.478 4.478 5 S 0.592 5.408 6 C -0.387 4.387 7 C 0.363 3.637 8 O -0.460 6.460 9 N -0.331 5.331 10 C -0.039 4.039 11 C -0.164 4.164 12 C -0.146 4.146 13 C -0.113 4.113 14 H 0.060 0.940 15 C 0.063 3.937 16 H 0.066 0.934 17 C -0.217 4.217 18 N -0.383 5.383 19 C -0.364 4.364 20 H 0.097 0.903 21 C -0.276 4.276 22 N -0.625 5.625 23 Si 0.802 3.198 24 H -0.185 1.185 25 H -0.225 1.225 26 H -0.223 1.223 27 C 0.003 3.997 28 C -0.125 4.125 29 H 0.133 0.867 30 H 0.088 0.912 31 H 0.085 0.915 32 H 0.221 0.779 33 H 0.124 0.876 34 H 0.116 0.884 35 H 0.137 0.863 36 H 0.071 0.929 37 H 0.109 0.891 38 H 0.097 0.903 39 H 0.062 0.938 40 H 0.103 0.897 41 H 0.052 0.948 42 H 0.202 0.798 43 H 0.056 0.944 44 H 0.067 0.933 45 H 0.105 0.895 46 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -30.647 7.032 5.120 31.857 hybrid contribution 1.596 -2.638 -0.558 3.133 sum -29.051 4.394 4.562 29.733 Atomic orbital electron populations 1.23351 0.75986 1.05582 1.02486 1.86102 1.23646 1.25275 1.89630 1.17401 0.90699 0.85880 1.02831 1.25722 1.07706 0.97586 1.16833 1.82583 0.88377 1.03859 1.65935 1.24221 0.97904 0.98882 1.17712 1.17499 0.86825 0.80843 0.78485 1.90888 1.51775 1.55524 1.47804 1.48096 1.12414 1.21643 1.50905 1.22583 0.90792 0.97607 0.92936 1.21908 0.97373 1.01657 0.95428 1.21633 0.93723 0.98244 1.00988 1.21543 0.95436 0.99122 0.95187 0.93992 1.20484 0.88126 0.90252 0.94796 0.93425 1.22399 1.00869 0.98008 1.00380 1.42833 1.02678 1.41662 1.51150 1.19700 0.84259 1.13692 1.18788 0.90262 1.25624 1.02491 0.99182 1.00307 1.69889 1.34552 1.25273 1.32819 0.85069 0.80439 0.77142 0.77117 1.18535 1.22504 1.22284 1.21510 0.81271 0.98896 0.98052 1.19964 0.94203 0.96517 1.01823 0.86657 0.91240 0.91532 0.77920 0.87647 0.88370 0.86277 0.92868 0.89146 0.90312 0.93779 0.89661 0.94790 0.79833 0.94359 0.93322 0.89454 0.84564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 9.93 113.37 1.13 1.32 16 2 O -0.33 -6.82 10.56 -95.99 -1.01 -7.84 16 3 C 0.09 1.89 6.61 21.20 0.14 2.03 16 4 C -0.34 -4.98 9.81 66.87 0.66 -4.32 16 5 S 0.32 4.83 19.34 -56.49 -1.09 3.74 16 6 C -0.27 -7.14 5.72 24.09 0.14 -7.00 16 7 C 0.58 20.27 7.58 86.41 0.65 20.92 16 8 O -0.58 -27.36 16.40 -4.39 -0.07 -27.43 16 9 N -0.60 -17.60 2.98 -824.60 -2.46 -20.05 16 10 C 0.08 1.46 5.53 86.36 0.48 1.94 16 11 C -0.13 -2.03 6.08 30.67 0.19 -1.84 16 12 C -0.11 -2.23 4.78 30.62 0.15 -2.08 16 13 C -0.09 -3.03 2.32 -10.86 -0.03 -3.06 16 14 H 0.04 1.62 8.14 -2.39 -0.02 1.60 16 15 C 0.17 6.68 2.72 44.99 0.12 6.80 16 16 H 0.05 1.87 8.08 -2.39 -0.02 1.85 16 17 C -0.16 -5.18 8.79 71.98 0.63 -4.54 16 18 N -0.74 -39.16 5.04 -322.93 -1.63 -40.78 16 19 C -0.23 -13.37 9.93 84.03 0.83 -12.54 16 20 H 0.08 4.32 7.83 -2.91 -0.02 4.29 16 21 C -0.08 -5.11 5.50 84.86 0.47 -4.65 16 22 N -0.97 -64.15 13.06 21.65 0.28 -63.87 16 23 Si 0.97 48.41 29.55 68.60 2.03 50.44 16 24 H -0.26 -11.97 7.11 99.48 0.71 -11.27 16 25 H -0.30 -14.92 7.11 99.48 0.71 -14.21 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 27 C 0.12 4.37 5.21 86.22 0.45 4.82 16 28 C -0.09 -2.46 10.13 21.80 0.22 -2.24 16 29 H 0.12 0.74 8.14 -2.39 -0.02 0.72 16 30 H 0.07 0.46 7.84 -2.39 -0.02 0.44 16 31 H 0.07 0.48 7.84 -2.38 -0.02 0.46 16 32 H 0.20 1.50 6.96 -2.91 -0.02 1.48 16 33 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 34 H 0.10 1.45 3.99 -18.63 -0.07 1.38 16 35 H 0.12 1.01 8.14 -2.39 -0.02 1.00 16 36 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 37 H 0.09 1.53 6.50 -2.39 -0.02 1.51 16 38 H 0.08 1.50 8.14 -2.38 -0.02 1.48 16 39 H 0.04 1.49 6.32 -2.39 -0.02 1.47 16 40 H 0.08 2.03 6.46 -2.39 -0.02 2.02 16 41 H 0.03 1.24 8.14 -2.39 -0.02 1.22 16 42 H 0.37 21.72 6.16 -92.71 -0.57 21.15 16 43 H 0.25 15.86 8.31 -92.71 -0.77 15.09 16 44 H 0.05 2.27 5.57 -2.39 -0.01 2.26 16 45 H 0.09 2.76 6.16 -2.39 -0.01 2.75 16 46 H 0.14 4.23 8.06 -2.91 -0.02 4.20 16 Total: -1.00 -83.70 371.99 2.64 -81.06 By element: Atomic # 1 Polarization: 28.80 SS G_CDS: 0.37 Total: 29.18 kcal Atomic # 6 Polarization: -10.67 SS G_CDS: 6.23 Total: -4.44 kcal Atomic # 7 Polarization: -120.91 SS G_CDS: -3.80 Total: -124.71 kcal Atomic # 8 Polarization: -34.18 SS G_CDS: -1.09 Total: -35.27 kcal Atomic # 14 Polarization: 48.41 SS G_CDS: 2.03 Total: 50.44 kcal Atomic # 16 Polarization: 4.83 SS G_CDS: -1.09 Total: 3.74 kcal Total: -83.70 2.64 -81.06 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001319819077.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.500 kcal (2) G-P(sol) polarization free energy of solvation -83.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.203 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.058 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.558 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds