Wall clock time and date at job start Tue Mar 31 2020 20:33:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46766 * 2 1 4 4 C 1.53004 * 109.46715 * 119.99316 * 2 1 3 5 5 C 1.53008 * 109.46689 * 185.00233 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47219 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46853 * 120.00096 * 15 13 11 18 18 H 1.48502 * 109.47406 * 239.99902 * 15 13 11 19 19 N 1.46500 * 109.47386 * 239.99538 * 2 1 3 20 20 C 1.34777 * 119.99764 * 85.00050 * 19 2 1 21 21 O 1.21524 * 120.00303 * 359.97438 * 20 19 2 22 22 C 1.48054 * 119.99722 * 180.02562 * 20 19 2 23 23 C 1.39381 * 119.69091 * 180.02562 * 22 20 19 24 24 C 1.38458 * 119.09182 * 179.97438 * 23 22 20 25 25 C 1.38902 * 118.47175 * 359.97438 * 24 23 22 26 26 F 1.35100 * 120.35447 * 179.97438 * 25 24 23 27 27 C 1.38871 * 119.29725 * 359.97438 * 25 24 23 28 28 N 1.31459 * 120.85801 * 359.72888 * 27 25 24 29 29 H 1.08997 * 109.47436 * 300.00187 * 1 2 3 30 30 H 1.09004 * 109.47014 * 60.00824 * 1 2 3 31 31 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46807 * 65.00592 * 4 2 1 33 33 H 1.08995 * 109.47458 * 305.00209 * 4 2 1 34 34 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 35 35 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 36 36 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 37 37 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 38 38 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 39 39 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 41 41 H 0.96995 * 119.99694 * 265.00114 * 19 2 1 42 42 H 1.07999 * 120.45066 * 359.97438 * 23 22 20 43 43 H 1.08001 * 120.76289 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.57302 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6131 1.3139 6 7 4.0544 -1.3060 2.5131 7 6 5.5181 -1.2234 2.6080 8 6 5.9825 -1.9442 3.8473 9 8 5.1739 -2.4749 4.5791 10 7 7.2965 -2.0000 4.1418 11 6 7.7190 -2.6553 5.2696 12 1 6.9989 -3.1264 5.9220 13 6 9.0737 -2.7124 5.5735 14 7 9.9498 -2.1378 4.7803 15 14 9.6492 -3.6046 7.1104 16 1 8.4748 -4.1612 7.8287 17 1 10.5643 -4.7098 6.7276 18 1 10.3664 -2.6526 7.9962 19 7 2.0184 -0.6907 -1.1961 20 6 2.1472 -0.0184 -2.3571 21 8 1.8577 1.1606 -2.4119 22 6 2.6402 -0.7165 -3.5660 23 6 2.7714 -0.0149 -4.7632 24 6 3.2341 -0.6800 -5.8860 25 6 3.5515 -2.0276 -5.7736 26 9 4.0058 -2.7137 -6.8451 27 6 3.3969 -2.6622 -4.5481 28 7 2.9607 -2.0030 -3.4977 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -1.7715 1.2057 33 1 1.6053 -0.2616 2.1370 34 1 3.8531 0.4371 1.3574 35 1 3.9995 -1.0727 0.4261 36 1 3.6166 -0.9411 3.3456 37 1 5.9659 -1.6872 1.7291 38 1 5.8204 -0.1775 2.6608 39 1 7.9432 -1.5759 3.5563 40 1 10.8955 -2.1773 4.9926 41 1 2.2491 -1.6318 -1.1524 42 1 2.5156 1.0331 -4.8143 43 1 3.3465 -0.1626 -6.8273 44 1 3.6427 -3.7098 -4.4555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001320404168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:06 Heat of formation + Delta-G solvation = -86.461718 kcal Electronic energy + Delta-G solvation = -27582.292336 eV Core-core repulsion = 23255.891646 eV Total energy + Delta-G solvation = -4326.400690 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -49.59187 -41.07227 -39.47858 -38.30168 -36.96587 -35.03667 -33.83151 -33.27928 -32.23627 -31.25240 -30.97266 -29.23823 -26.25139 -25.25141 -24.46442 -24.04849 -22.39219 -21.62691 -20.81111 -19.25898 -18.72523 -18.09813 -17.88704 -17.77080 -16.56752 -16.42886 -16.09832 -15.66332 -15.53977 -15.34783 -14.74672 -14.54237 -14.45084 -14.27844 -14.05531 -13.91053 -13.77946 -13.63674 -13.49764 -13.18536 -13.04218 -12.71163 -12.27559 -12.25047 -11.66465 -11.49920 -11.26790 -11.25356 -11.05635 -10.93617 -10.68028 -10.60705 -10.33878 -10.21863 -10.14569 -9.63403 -9.51398 -9.32147 -8.45669 -8.05243 -7.95181 -6.41151 -3.81946 -0.06598 0.46344 2.22839 2.71504 3.16800 3.24979 3.27255 3.33493 3.34649 3.62635 3.91673 4.04123 4.08914 4.14916 4.25290 4.29866 4.70771 4.79484 4.83467 4.95522 5.07991 5.12548 5.22529 5.24783 5.25205 5.31674 5.35591 5.51496 5.57859 5.65801 5.80591 5.90245 5.92186 5.94718 6.00139 6.08106 6.24854 6.28403 6.93178 7.21819 7.27546 7.56039 7.67420 7.84046 8.07365 8.61990 9.18607 9.55206 10.06572 10.76741 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.001973 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.984624 B =14184.682470 C =15965.471116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.141 3.859 3 H 0.091 0.909 4 C -0.126 4.126 5 C 0.058 3.942 6 N -0.669 5.669 7 C 0.051 3.949 8 C 0.441 3.559 9 O -0.583 6.583 10 N -0.565 5.565 11 C -0.298 4.298 12 H 0.104 0.896 13 C 0.021 3.979 14 N -0.902 5.902 15 Si 0.930 3.070 16 H -0.268 1.268 17 H -0.281 1.281 18 H -0.282 1.282 19 N -0.700 5.700 20 C 0.574 3.426 21 O -0.533 6.533 22 C 0.067 3.933 23 C -0.082 4.082 24 C -0.116 4.116 25 C 0.071 3.929 26 F -0.123 7.123 27 C 0.078 3.922 28 N -0.428 5.428 29 H 0.068 0.932 30 H 0.059 0.941 31 H 0.059 0.941 32 H 0.081 0.919 33 H 0.081 0.919 34 H 0.026 0.974 35 H 0.071 0.929 36 H 0.349 0.651 37 H 0.085 0.915 38 H 0.043 0.957 39 H 0.392 0.608 40 H 0.271 0.729 41 H 0.413 0.587 42 H 0.160 0.840 43 H 0.156 0.844 44 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.389 4.679 -22.533 27.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.037 3.963 3 H 0.109 0.891 4 C -0.164 4.164 5 C -0.071 4.071 6 N -0.301 5.301 7 C -0.082 4.082 8 C 0.227 3.773 9 O -0.467 6.467 10 N -0.201 5.201 11 C -0.428 4.428 12 H 0.121 0.879 13 C -0.180 4.180 14 N -0.544 5.544 15 Si 0.757 3.243 16 H -0.192 1.192 17 H -0.207 1.207 18 H -0.208 1.208 19 N -0.352 5.352 20 C 0.358 3.642 21 O -0.409 6.409 22 C -0.071 4.071 23 C -0.103 4.103 24 C -0.142 4.142 25 C 0.049 3.951 26 F -0.102 7.102 27 C -0.083 4.083 28 N -0.139 5.139 29 H 0.087 0.913 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.100 0.900 33 H 0.100 0.900 34 H 0.045 0.955 35 H 0.089 0.911 36 H 0.168 0.832 37 H 0.103 0.897 38 H 0.061 0.939 39 H 0.225 0.775 40 H 0.081 0.919 41 H 0.250 0.750 42 H 0.177 0.823 43 H 0.174 0.826 44 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges -16.013 4.130 -21.520 27.140 hybrid contribution 1.379 0.548 -0.513 1.570 sum -14.634 4.678 -22.033 26.861 Atomic orbital electron populations 1.22163 0.94789 1.02458 1.02642 1.21080 0.94232 0.97575 0.83441 0.89134 1.21883 0.95706 1.02147 0.96646 1.21972 0.94487 0.96144 0.94536 1.60071 1.04936 1.59901 1.05219 1.21666 0.88925 0.98729 0.98881 1.19814 0.83403 0.86095 0.88013 1.90518 1.53406 1.50459 1.52358 1.41879 1.05442 1.48918 1.23888 1.19758 0.91984 1.30129 1.00912 0.87852 1.25272 0.95636 0.97854 0.99275 1.69621 1.02479 1.44355 1.37910 0.85797 0.78767 0.78846 0.80915 1.19202 1.20741 1.20780 1.45992 1.65315 1.14964 1.08919 1.17702 0.77927 0.85978 0.82595 1.90803 1.50546 1.14945 1.84628 1.21304 1.00556 0.90501 0.94755 1.22065 0.95079 1.02325 0.90793 1.21717 0.98847 0.92773 1.00899 1.19095 0.99188 0.91311 0.85502 1.91567 1.85966 1.79163 1.53486 1.22994 0.97548 1.01396 0.86403 1.67623 1.07974 1.07893 1.30371 0.91256 0.92146 0.92161 0.90007 0.90003 0.95542 0.91104 0.83212 0.89688 0.93936 0.77468 0.91931 0.75011 0.82283 0.82632 0.80570 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.31 9.48 37.16 0.35 -0.96 16 2 C 0.14 1.28 2.57 -67.93 -0.17 1.11 16 3 H 0.09 0.93 7.58 -51.93 -0.39 0.54 16 4 C -0.13 -1.20 5.01 -26.72 -0.13 -1.33 16 5 C 0.06 0.70 5.57 -3.82 -0.02 0.68 16 6 N -0.67 -10.70 6.12 -115.05 -0.70 -11.41 16 7 C 0.05 0.91 6.17 -4.97 -0.03 0.88 16 8 C 0.44 10.53 7.82 -10.99 -0.09 10.45 16 9 O -0.58 -15.94 15.78 5.55 0.09 -15.85 16 10 N -0.56 -14.47 5.29 -10.97 -0.06 -14.53 16 11 C -0.30 -8.38 9.68 -14.93 -0.14 -8.53 16 12 H 0.10 3.05 7.16 -52.49 -0.38 2.67 16 13 C 0.02 0.57 5.50 -17.47 -0.10 0.47 16 14 N -0.90 -24.73 13.05 55.50 0.72 -24.01 16 15 Si 0.93 21.14 29.55 -169.99 -5.02 16.12 16 16 H -0.27 -6.09 7.11 56.52 0.40 -5.68 16 17 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 18 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 19 N -0.70 -6.54 4.52 -54.68 -0.25 -6.79 16 20 C 0.57 6.08 7.77 -12.23 -0.10 5.99 16 21 O -0.53 -6.90 15.98 5.34 0.09 -6.82 16 22 C 0.07 0.61 6.75 -83.02 -0.56 0.05 16 23 C -0.08 -0.60 9.63 -39.07 -0.38 -0.97 16 24 C -0.12 -0.68 10.15 -39.25 -0.40 -1.08 16 25 C 0.07 0.48 7.36 -39.10 -0.29 0.19 16 26 F -0.12 -0.88 17.28 2.25 0.04 -0.84 16 27 C 0.08 0.55 11.17 -17.48 -0.20 0.35 16 28 N -0.43 -3.74 9.54 -9.74 -0.09 -3.83 16 29 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 30 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 31 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.03 0.32 8.14 -51.93 -0.42 -0.11 16 35 H 0.07 0.86 7.75 -51.93 -0.40 0.46 16 36 H 0.35 5.70 8.43 -39.29 -0.33 5.37 16 37 H 0.08 1.43 8.14 -51.93 -0.42 1.00 16 38 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.39 9.62 7.90 -40.82 -0.32 9.29 16 40 H 0.27 7.00 8.31 -40.82 -0.34 6.66 16 41 H 0.41 3.61 7.93 -40.82 -0.32 3.29 16 42 H 0.16 1.01 7.64 -52.49 -0.40 0.61 16 43 H 0.16 0.51 8.06 -52.49 -0.42 0.09 16 44 H 0.18 0.83 8.06 -52.49 -0.42 0.41 16 LS Contribution 387.01 15.07 5.83 5.83 Total: -1.00 -33.31 387.01 -7.52 -40.82 By element: Atomic # 1 Polarization: 19.91 SS G_CDS: -5.91 Total: 14.00 kcal Atomic # 6 Polarization: 9.55 SS G_CDS: -2.25 Total: 7.30 kcal Atomic # 7 Polarization: -60.18 SS G_CDS: -0.38 Total: -60.56 kcal Atomic # 8 Polarization: -22.84 SS G_CDS: 0.17 Total: -22.67 kcal Atomic # 9 Polarization: -0.88 SS G_CDS: 0.04 Total: -0.84 kcal Atomic # 14 Polarization: 21.14 SS G_CDS: -5.02 Total: 16.12 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -33.31 -7.52 -40.82 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320404168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.638 kcal (2) G-P(sol) polarization free energy of solvation -33.306 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -78.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.518 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.824 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds