Wall clock time and date at job start Tue Mar 31 2020 20:33:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.09000 * 109.46766 * 2 1 4 4 C 1.53004 * 109.46715 * 119.99316 * 2 1 3 5 5 C 1.53008 * 109.46689 * 185.00233 * 4 2 1 6 6 N 1.46902 * 109.46622 * 180.02562 * 5 4 2 7 7 C 1.46906 * 110.99573 * 179.97438 * 6 5 4 8 8 C 1.50699 * 109.46990 * 180.02562 * 7 6 5 9 9 O 1.21287 * 119.99883 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99971 * 179.97438 * 8 7 6 11 11 C 1.37104 * 120.00013 * 179.97438 * 10 8 7 12 12 H 1.07992 * 119.99812 * 359.97438 * 11 10 8 13 13 C 1.38953 * 119.99796 * 180.02562 * 11 10 8 14 14 N 1.31411 * 120.00211 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 119.99595 * 179.97438 * 13 11 10 16 16 H 1.48497 * 109.47219 * 0.02562 * 15 13 11 17 17 H 1.48501 * 109.46853 * 120.00096 * 15 13 11 18 18 H 1.48502 * 109.47406 * 239.99902 * 15 13 11 19 19 N 1.46500 * 109.47386 * 239.99538 * 2 1 3 20 20 C 1.34777 * 119.99764 * 85.00050 * 19 2 1 21 21 O 1.21524 * 120.00303 * 359.97438 * 20 19 2 22 22 C 1.48054 * 119.99722 * 180.02562 * 20 19 2 23 23 C 1.39381 * 119.69091 * 180.02562 * 22 20 19 24 24 C 1.38458 * 119.09182 * 179.97438 * 23 22 20 25 25 C 1.38902 * 118.47175 * 359.97438 * 24 23 22 26 26 F 1.35100 * 120.35447 * 179.97438 * 25 24 23 27 27 C 1.38871 * 119.29725 * 359.97438 * 25 24 23 28 28 N 1.31459 * 120.85801 * 359.72888 * 27 25 24 29 29 H 1.08997 * 109.47436 * 300.00187 * 1 2 3 30 30 H 1.09004 * 109.47014 * 60.00824 * 1 2 3 31 31 H 1.09000 * 109.46766 * 179.97438 * 1 2 3 32 32 H 1.09006 * 109.46807 * 65.00592 * 4 2 1 33 33 H 1.08995 * 109.47458 * 305.00209 * 4 2 1 34 34 H 1.08990 * 109.46924 * 60.00331 * 5 4 2 35 35 H 1.09004 * 109.46978 * 300.00208 * 5 4 2 36 36 H 1.00896 * 111.00219 * 303.95583 * 6 5 4 37 37 H 1.09002 * 109.46991 * 299.99841 * 7 6 5 38 38 H 1.09000 * 109.47202 * 60.00133 * 7 6 5 39 39 H 0.97000 * 120.00083 * 0.02562 * 10 8 7 40 40 H 0.96998 * 120.00198 * 179.97438 * 14 13 11 41 41 H 0.96995 * 119.99694 * 265.00114 * 19 2 1 42 42 H 1.07999 * 120.45066 * 359.97438 * 23 22 20 43 43 H 1.08001 * 120.76289 * 180.02562 * 24 23 22 44 44 H 1.07999 * 119.57302 * 180.02562 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7211 1.2494 5 6 3.5648 -0.6131 1.3139 6 7 4.0544 -1.3060 2.5131 7 6 5.5181 -1.2234 2.6080 8 6 5.9825 -1.9442 3.8473 9 8 5.1739 -2.4749 4.5791 10 7 7.2965 -2.0000 4.1418 11 6 7.7190 -2.6553 5.2696 12 1 6.9989 -3.1264 5.9220 13 6 9.0737 -2.7124 5.5735 14 7 9.9498 -2.1378 4.7803 15 14 9.6492 -3.6046 7.1104 16 1 8.4748 -4.1612 7.8287 17 1 10.5643 -4.7098 6.7276 18 1 10.3664 -2.6526 7.9962 19 7 2.0184 -0.6907 -1.1961 20 6 2.1472 -0.0184 -2.3571 21 8 1.8577 1.1606 -2.4119 22 6 2.6402 -0.7165 -3.5660 23 6 2.7714 -0.0149 -4.7632 24 6 3.2341 -0.6800 -5.8860 25 6 3.5515 -2.0276 -5.7736 26 9 4.0058 -2.7137 -6.8451 27 6 3.3969 -2.6622 -4.5481 28 7 2.9607 -2.0030 -3.4977 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5137 -0.8901 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -1.7715 1.2057 33 1 1.6053 -0.2616 2.1370 34 1 3.8531 0.4371 1.3574 35 1 3.9995 -1.0727 0.4261 36 1 3.6166 -0.9411 3.3456 37 1 5.9659 -1.6872 1.7291 38 1 5.8204 -0.1775 2.6608 39 1 7.9432 -1.5759 3.5563 40 1 10.8955 -2.1773 4.9926 41 1 2.2491 -1.6318 -1.1524 42 1 2.5156 1.0331 -4.8143 43 1 3.3465 -0.1626 -6.8273 44 1 3.6427 -3.7098 -4.4555 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001320404168.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:05 Heat of formation + Delta-G solvation = -111.569224 kcal Electronic energy + Delta-G solvation = -27583.381079 eV Core-core repulsion = 23255.891646 eV Total energy + Delta-G solvation = -4327.489433 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.13307 -41.72568 -40.26613 -40.08058 -37.95998 -36.32300 -35.71644 -33.87382 -33.28920 -32.94106 -31.72958 -30.26284 -27.79684 -26.04324 -25.63526 -24.95987 -23.37484 -22.42434 -21.59769 -21.07308 -19.92682 -19.39237 -18.65672 -18.38633 -17.84846 -17.34148 -16.99953 -16.91804 -16.47936 -16.35928 -16.09349 -15.90716 -15.41823 -15.32533 -15.10625 -14.93238 -14.81418 -14.56246 -14.31724 -14.22930 -13.84541 -13.66206 -13.57947 -13.49868 -13.20727 -12.93937 -12.80836 -12.41702 -12.23004 -12.12399 -12.10676 -11.78415 -11.51882 -11.42584 -11.12907 -10.79029 -10.36911 -10.29160 -10.02578 -10.02062 -9.34841 -8.47353 -5.96278 -0.66295 -0.04552 1.36659 1.42006 1.53189 1.56481 2.00713 2.03869 2.28867 2.61429 2.79026 2.87964 3.03662 3.19820 3.47905 3.57619 3.67384 3.74984 3.94362 4.02658 4.10792 4.13377 4.31921 4.42322 4.48825 4.52411 4.58979 4.61591 4.68224 4.70991 4.77264 4.84598 4.91260 5.06526 5.21028 5.32253 5.38633 5.40811 5.49366 5.87727 6.08882 6.28100 6.41138 6.58831 6.59007 7.07674 7.11767 7.55073 8.09993 8.70389 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.011762 B = 0.001973 C = 0.001753 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2379.984624 B =14184.682470 C =15965.471116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.146 3.854 3 H 0.080 0.920 4 C -0.115 4.115 5 C 0.062 3.938 6 N -0.680 5.680 7 C 0.064 3.936 8 C 0.438 3.562 9 O -0.622 6.622 10 N -0.574 5.574 11 C -0.333 4.333 12 H 0.080 0.920 13 C -0.015 4.015 14 N -0.921 5.921 15 Si 0.994 3.006 16 H -0.272 1.272 17 H -0.271 1.271 18 H -0.271 1.271 19 N -0.696 5.696 20 C 0.571 3.429 21 O -0.563 6.563 22 C 0.047 3.953 23 C -0.083 4.083 24 C -0.106 4.106 25 C 0.070 3.930 26 F -0.124 7.124 27 C 0.074 3.926 28 N -0.443 5.443 29 H 0.081 0.919 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.082 0.918 33 H 0.091 0.909 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.346 0.654 37 H 0.101 0.899 38 H 0.063 0.937 39 H 0.396 0.604 40 H 0.278 0.722 41 H 0.416 0.584 42 H 0.166 0.834 43 H 0.184 0.816 44 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.266 4.630 -23.506 28.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.041 3.959 3 H 0.098 0.902 4 C -0.153 4.153 5 C -0.067 4.067 6 N -0.312 5.312 7 C -0.068 4.068 8 C 0.226 3.774 9 O -0.508 6.508 10 N -0.211 5.211 11 C -0.462 4.462 12 H 0.098 0.902 13 C -0.214 4.214 14 N -0.562 5.562 15 Si 0.818 3.182 16 H -0.197 1.197 17 H -0.196 1.196 18 H -0.196 1.196 19 N -0.347 5.347 20 C 0.357 3.643 21 O -0.442 6.442 22 C -0.090 4.090 23 C -0.104 4.104 24 C -0.132 4.132 25 C 0.049 3.951 26 F -0.103 7.103 27 C -0.088 4.088 28 N -0.153 5.153 29 H 0.100 0.900 30 H 0.067 0.933 31 H 0.085 0.915 32 H 0.100 0.900 33 H 0.110 0.890 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.164 0.836 37 H 0.119 0.881 38 H 0.081 0.919 39 H 0.230 0.770 40 H 0.087 0.913 41 H 0.254 0.746 42 H 0.183 0.817 43 H 0.202 0.798 44 H 0.213 0.787 Dipole moment (debyes) X Y Z Total from point charges -15.887 4.085 -22.515 27.857 hybrid contribution 1.321 0.549 -0.287 1.459 sum -14.565 4.634 -22.802 27.451 Atomic orbital electron populations 1.22108 0.93785 1.02885 1.02690 1.21027 0.94923 0.96842 0.83090 0.90192 1.21789 0.93907 1.02340 0.97246 1.22021 0.95992 0.95974 0.92715 1.60080 1.03664 1.61119 1.06380 1.21524 0.90337 0.98989 0.95967 1.20844 0.82434 0.85070 0.89074 1.90485 1.54212 1.51963 1.54148 1.41954 1.06328 1.49220 1.23613 1.19717 0.92371 1.31969 1.02177 0.90225 1.26072 0.95176 0.98111 1.02053 1.69680 1.02941 1.44570 1.39058 0.84853 0.78073 0.78003 0.77300 1.19702 1.19593 1.19577 1.46001 1.64823 1.15047 1.08786 1.17955 0.77459 0.85713 0.83213 1.90777 1.52066 1.16151 1.85179 1.21217 1.01976 0.91010 0.94811 1.22175 0.94967 1.02651 0.90605 1.21988 0.97293 0.92431 1.01483 1.19168 0.98975 0.91657 0.85335 1.91569 1.85964 1.79253 1.53496 1.23335 0.96976 1.02237 0.86220 1.67586 1.08695 1.07841 1.31222 0.90014 0.93277 0.91519 0.89973 0.89042 0.94979 0.91041 0.83553 0.88129 0.91880 0.77021 0.91289 0.74618 0.81685 0.79847 0.78669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 71.98 0.68 -1.68 16 2 C 0.15 2.52 2.57 44.99 0.12 2.63 16 3 H 0.08 1.59 7.58 -2.39 -0.02 1.58 16 4 C -0.11 -2.03 5.01 30.60 0.15 -1.88 16 5 C 0.06 1.40 5.57 86.31 0.48 1.88 16 6 N -0.68 -21.03 6.12 -517.91 -3.17 -24.20 16 7 C 0.06 2.24 6.17 85.56 0.53 2.76 16 8 C 0.44 21.05 7.82 87.66 0.69 21.73 16 9 O -0.62 -34.58 15.78 -3.05 -0.05 -34.63 16 10 N -0.57 -29.77 5.29 -307.00 -1.62 -31.39 16 11 C -0.33 -19.04 9.68 84.04 0.81 -18.22 16 12 H 0.08 4.85 7.16 -2.91 -0.02 4.83 16 13 C -0.01 -0.78 5.50 84.93 0.47 -0.31 16 14 N -0.92 -50.05 13.05 21.66 0.28 -49.76 16 15 Si 0.99 43.06 29.55 68.60 2.03 45.08 16 16 H -0.27 -11.91 7.11 99.48 0.71 -11.20 16 17 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 18 H -0.27 -11.19 7.11 99.48 0.71 -10.48 16 19 N -0.70 -12.62 4.52 -445.20 -2.01 -14.63 16 20 C 0.57 12.03 7.77 86.85 0.67 12.70 16 21 O -0.56 -14.67 15.98 -3.79 -0.06 -14.73 16 22 C 0.05 0.84 6.75 41.89 0.28 1.13 16 23 C -0.08 -1.13 9.63 22.60 0.22 -0.91 16 24 C -0.11 -1.04 10.15 22.48 0.23 -0.81 16 25 C 0.07 0.83 7.36 22.58 0.17 1.00 16 26 F -0.12 -1.55 17.28 44.97 0.78 -0.77 16 27 C 0.07 0.95 11.17 84.90 0.95 1.90 16 28 N -0.44 -7.40 9.54 -184.74 -1.76 -9.16 16 29 H 0.08 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.05 0.87 8.14 -2.38 -0.02 0.85 16 31 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 32 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 33 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 34 H 0.03 0.71 8.14 -2.39 -0.02 0.69 16 35 H 0.07 1.63 7.75 -2.38 -0.02 1.61 16 36 H 0.35 11.05 8.43 -89.70 -0.76 10.29 16 37 H 0.10 3.21 8.14 -2.39 -0.02 3.19 16 38 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 39 H 0.40 19.54 7.90 -92.71 -0.73 18.81 16 40 H 0.28 14.05 8.31 -92.71 -0.77 13.28 16 41 H 0.42 7.00 7.93 -92.71 -0.73 6.27 16 42 H 0.17 1.98 7.64 -2.91 -0.02 1.96 16 43 H 0.18 0.69 8.06 -2.91 -0.02 0.67 16 44 H 0.20 1.55 8.06 -2.91 -0.02 1.53 16 Total: -1.00 -71.83 387.01 -0.30 -72.13 By element: Atomic # 1 Polarization: 41.30 SS G_CDS: -1.16 Total: 40.15 kcal Atomic # 6 Polarization: 15.46 SS G_CDS: 6.44 Total: 21.91 kcal Atomic # 7 Polarization: -120.86 SS G_CDS: -8.29 Total: -129.14 kcal Atomic # 8 Polarization: -49.24 SS G_CDS: -0.11 Total: -49.35 kcal Atomic # 9 Polarization: -1.55 SS G_CDS: 0.78 Total: -0.77 kcal Atomic # 14 Polarization: 43.06 SS G_CDS: 2.03 Total: 45.08 kcal Total: -71.83 -0.30 -72.13 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001320404168.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.442 kcal (2) G-P(sol) polarization free energy of solvation -71.827 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.300 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -111.569 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds