Wall clock time and date at job start Tue Mar 31 2020 20:26:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46507 * 109.47031 * 120.00628 * 2 1 3 11 11 C 1.34780 * 119.99461 * 274.99616 * 10 2 1 12 12 O 1.21355 * 120.00191 * 0.02562 * 11 10 2 13 13 C 1.49455 * 119.99830 * 179.97438 * 11 10 2 14 14 O 1.21348 * 119.99738 * 0.02562 * 13 11 10 15 15 N 1.34770 * 119.99851 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99971 * 179.97438 * 15 13 11 17 17 C 1.52995 * 109.47250 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.47360 * 300.00194 * 17 16 15 19 19 C 1.52998 * 109.47540 * 60.00290 * 17 16 15 20 20 C 1.50702 * 109.47282 * 180.02562 * 17 16 15 21 21 H 1.07997 * 119.99694 * 359.97438 * 20 17 16 22 22 C 1.37876 * 120.00283 * 179.97438 * 20 17 16 23 23 N 1.31519 * 120.00001 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 120.00110 * 179.97438 * 22 20 17 25 25 H 1.48497 * 109.46987 * 60.00102 * 24 22 20 26 26 H 1.48507 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46892 * 299.99999 * 24 22 20 28 28 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 29 29 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 30 30 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 32 32 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 33 33 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 34 34 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 36 36 H 0.96996 * 120.00214 * 94.99670 * 10 2 1 37 37 H 0.97003 * 120.00002 * 0.02562 * 15 13 11 38 38 H 1.08994 * 109.47448 * 300.00778 * 16 15 13 39 39 H 1.09003 * 109.46708 * 60.00693 * 16 15 13 40 40 H 1.09004 * 109.46856 * 59.99655 * 18 17 16 41 41 H 1.08996 * 109.47221 * 180.02562 * 18 17 16 42 42 H 1.09002 * 109.46700 * 300.00510 * 18 17 16 43 43 H 1.09004 * 109.47172 * 59.99728 * 19 17 16 44 44 H 1.08997 * 109.47869 * 180.02562 * 19 17 16 45 45 H 1.09004 * 109.46687 * 300.00351 * 19 17 16 46 46 H 0.96997 * 119.99950 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0183 -0.6908 1.1962 11 6 2.1471 -0.0184 2.3571 12 8 1.8581 1.1590 2.4118 13 6 2.6447 -0.7231 3.5776 14 8 2.9332 -1.9006 3.5230 15 7 2.7739 -0.0507 4.7383 16 6 3.2611 -0.7416 5.9348 17 6 3.3129 0.2415 7.1059 18 6 4.2580 1.3947 6.7625 19 6 1.9107 0.7931 7.3712 20 6 3.8147 -0.4691 8.3366 21 1 4.0707 -1.5172 8.2882 22 6 3.9470 0.2188 9.5241 23 7 3.6358 1.4953 9.5828 24 14 4.5684 -0.6622 11.0496 25 1 5.9291 -1.1981 10.7920 26 1 4.6199 0.2924 12.1861 27 1 3.6506 -1.7809 11.3834 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2057 33 1 4.0722 -2.3623 -0.2354 34 1 6.5316 -1.7991 -0.5770 35 1 6.9415 0.3381 -1.8822 36 1 2.2490 -1.6319 1.1525 37 1 2.5436 0.8906 4.7818 38 1 2.5877 -1.5629 6.1797 39 1 4.2600 -1.1349 5.7457 40 1 3.8955 1.9087 5.8723 41 1 4.2952 2.0948 7.5970 42 1 5.2570 1.0016 6.5735 43 1 1.2373 -0.0284 7.6159 44 1 1.9476 1.4939 8.2053 45 1 1.5481 1.3072 6.4810 46 1 3.7293 1.9793 10.4182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325499664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:57 Heat of formation + Delta-G solvation = -51.217485 kcal Electronic energy + Delta-G solvation = -27031.095360 eV Core-core repulsion = 23240.143400 eV Total energy + Delta-G solvation = -3790.951960 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -40.49089 -38.77620 -38.00913 -36.48512 -36.15352 -33.39979 -32.20249 -30.88269 -30.24185 -26.67797 -26.36585 -25.71793 -25.29838 -23.95424 -23.18800 -21.25831 -20.35773 -19.41614 -18.96034 -18.21312 -17.35623 -16.79403 -16.03948 -15.74442 -15.64607 -15.39057 -14.89444 -14.57680 -14.29966 -13.93463 -13.68885 -13.59457 -13.33994 -12.92813 -12.86207 -12.84783 -12.62115 -12.46107 -12.21418 -11.94735 -11.86561 -11.43950 -11.39195 -11.31705 -11.16276 -10.96641 -10.86104 -10.74083 -10.39376 -10.20062 -9.64710 -9.53109 -9.35104 -9.20662 -8.86748 -8.80613 -8.67321 -8.58777 -8.36597 -6.02398 -4.13373 0.76320 1.40032 1.69319 1.76571 2.53130 2.60947 3.29667 3.34339 3.37357 3.50727 3.93384 4.30312 4.39171 4.49132 4.77792 4.83793 4.88035 4.98297 5.12304 5.24083 5.27619 5.37358 5.41229 5.44602 5.69549 5.88154 5.93833 6.07891 6.12153 6.22379 6.24010 6.28010 6.47482 6.64251 6.83427 6.85622 6.94755 7.00786 7.13666 7.33807 7.55517 7.67654 7.74105 7.99867 8.00386 8.13427 8.33573 8.42463 8.86671 9.52489 10.98983 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.002431 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.834420 B =11513.023545 C =12168.702201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.145 3.855 3 H 0.094 0.906 4 C -0.056 4.056 5 C -0.178 4.178 6 C -0.131 4.131 7 C -0.131 4.131 8 C -0.214 4.214 9 S 0.093 5.907 10 N -0.698 5.698 11 C 0.510 3.490 12 O -0.520 6.520 13 C 0.495 3.505 14 O -0.536 6.536 15 N -0.680 5.680 16 C 0.128 3.872 17 C 0.057 3.943 18 C -0.133 4.133 19 C -0.134 4.134 20 C -0.509 4.509 21 H 0.058 0.942 22 C 0.067 3.933 23 N -0.885 5.885 24 Si 0.895 3.105 25 H -0.277 1.277 26 H -0.287 1.287 27 H -0.277 1.277 28 H 0.067 0.933 29 H 0.068 0.932 30 H 0.061 0.939 31 H 0.093 0.907 32 H 0.091 0.909 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.163 0.837 36 H 0.410 0.590 37 H 0.411 0.589 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.008 0.992 46 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.177 -2.690 -24.269 24.515 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.040 3.960 3 H 0.112 0.888 4 C -0.096 4.096 5 C -0.295 4.295 6 C -0.162 4.162 7 C -0.161 4.161 8 C -0.349 4.349 9 S 0.356 5.644 10 N -0.352 5.352 11 C 0.291 3.709 12 O -0.395 6.395 13 C 0.275 3.725 14 O -0.415 6.415 15 N -0.332 5.332 16 C 0.006 3.994 17 C 0.056 3.944 18 C -0.191 4.191 19 C -0.191 4.191 20 C -0.547 4.547 21 H 0.076 0.924 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.722 3.278 25 H -0.203 1.203 26 H -0.213 1.213 27 H -0.203 1.203 28 H 0.086 0.914 29 H 0.087 0.913 30 H 0.080 0.920 31 H 0.111 0.889 32 H 0.109 0.891 33 H 0.157 0.843 34 H 0.158 0.842 35 H 0.180 0.820 36 H 0.246 0.754 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.079 0.921 40 H 0.027 0.973 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.106 0.894 45 H 0.027 0.973 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -2.558 -1.200 -24.906 25.065 hybrid contribution 0.922 -1.713 1.659 2.556 sum -1.636 -2.913 -23.247 23.486 Atomic orbital electron populations 1.22201 0.94302 1.02670 1.03153 1.21058 0.94276 0.97734 0.82974 0.88824 1.20498 0.88345 1.02657 0.98107 1.24382 0.99213 0.99609 1.06269 1.20155 0.92417 1.01342 1.02246 1.20213 0.97196 0.97797 1.00933 1.25603 1.01207 1.00756 1.07375 1.84240 0.97762 1.27157 1.55249 1.45779 1.66001 1.14755 1.08676 1.20460 0.78560 0.87012 0.84874 1.90748 1.48438 1.15436 1.84918 1.19986 0.80571 0.87188 0.84785 1.90713 1.50257 1.15378 1.85107 1.46218 1.62634 1.15144 1.09193 1.21932 0.98194 0.96272 0.82956 1.18367 0.93440 0.91776 0.90815 1.21857 0.97741 1.00117 0.99395 1.21857 0.96566 1.00525 1.00177 1.20918 1.44167 0.96230 0.93395 0.92410 1.24880 0.95045 0.94855 0.98673 1.69800 1.48128 1.07871 1.26480 0.86617 0.79440 0.79384 0.82309 1.20273 1.21312 1.20272 0.91401 0.91261 0.92005 0.88871 0.89071 0.84267 0.84208 0.81981 0.75376 0.75214 0.92043 0.92054 0.97282 0.89436 0.95381 0.95352 0.89445 0.97273 0.92878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.33 9.48 37.16 0.35 -0.97 16 2 C 0.14 1.33 2.56 -67.92 -0.17 1.16 16 3 H 0.09 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.06 -0.39 5.25 -27.88 -0.15 -0.54 16 5 C -0.18 -1.59 5.52 -36.00 -0.20 -1.79 16 6 C -0.13 -1.25 9.85 -41.21 -0.41 -1.66 16 7 C -0.13 -1.25 10.18 -41.21 -0.42 -1.67 16 8 C -0.21 -1.94 11.23 29.04 0.33 -1.62 16 9 S 0.09 0.83 23.33 -107.50 -2.51 -1.68 16 10 N -0.70 -8.02 4.65 -54.23 -0.25 -8.27 16 11 C 0.51 7.80 7.85 -11.58 -0.09 7.71 16 12 O -0.52 -8.97 16.14 5.49 0.09 -8.89 16 13 C 0.50 8.73 7.89 -11.59 -0.09 8.64 16 14 O -0.54 -10.19 16.48 5.50 0.09 -10.10 16 15 N -0.68 -12.76 4.95 -60.73 -0.30 -13.06 16 16 C 0.13 2.70 4.50 -4.04 -0.02 2.68 16 17 C 0.06 1.32 0.50 -155.66 -0.08 1.24 16 18 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 19 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 20 C -0.51 -13.24 8.01 -34.44 -0.28 -13.52 16 21 H 0.06 1.50 7.74 -52.49 -0.41 1.09 16 22 C 0.07 1.76 5.15 -17.82 -0.09 1.67 16 23 N -0.88 -23.66 9.35 55.43 0.52 -23.15 16 24 Si 0.89 20.63 29.54 -169.99 -5.02 15.61 16 25 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 26 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 27 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 28 H 0.07 0.70 8.14 -51.93 -0.42 0.27 16 29 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 31 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 32 H 0.09 0.51 8.14 -51.93 -0.42 0.08 16 33 H 0.14 1.19 8.06 -52.49 -0.42 0.77 16 34 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 35 H 0.16 1.15 8.06 -52.49 -0.42 0.72 16 36 H 0.41 4.28 8.03 -40.82 -0.33 3.95 16 37 H 0.41 7.62 5.64 -40.82 -0.23 7.39 16 38 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 40 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 41 H 0.09 2.22 6.07 -51.93 -0.31 1.90 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 45 H 0.01 0.18 6.86 -51.93 -0.36 -0.18 16 46 H 0.26 6.76 8.31 -40.82 -0.34 6.42 16 LS Contribution 390.52 15.07 5.89 5.89 Total: -1.00 -29.08 390.52 -9.12 -38.20 By element: Atomic # 1 Polarization: 16.57 SS G_CDS: -6.91 Total: 9.66 kcal Atomic # 6 Polarization: -3.50 SS G_CDS: -0.71 Total: -4.21 kcal Atomic # 7 Polarization: -44.45 SS G_CDS: -0.03 Total: -44.48 kcal Atomic # 8 Polarization: -19.17 SS G_CDS: 0.18 Total: -18.99 kcal Atomic # 14 Polarization: 20.63 SS G_CDS: -5.02 Total: 15.61 kcal Atomic # 16 Polarization: 0.83 SS G_CDS: -2.51 Total: -1.68 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.08 -9.12 -38.20 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325499664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.016 kcal (2) G-P(sol) polarization free energy of solvation -29.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.121 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds