Wall clock time and date at job start Tue Mar 31 2020 20:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 109.47423 * 2 1 4 4 C 1.53005 * 109.47037 * 239.99902 * 2 1 3 5 5 C 1.50702 * 109.46948 * 175.00137 * 4 2 1 6 6 C 1.33381 * 125.20534 * 90.00166 * 5 4 2 7 7 C 1.38427 * 114.92374 * 180.02562 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46507 * 109.47031 * 120.00628 * 2 1 3 11 11 C 1.34780 * 119.99461 * 274.99616 * 10 2 1 12 12 O 1.21355 * 120.00191 * 0.02562 * 11 10 2 13 13 C 1.49455 * 119.99830 * 179.97438 * 11 10 2 14 14 O 1.21348 * 119.99738 * 0.02562 * 13 11 10 15 15 N 1.34770 * 119.99851 * 179.97438 * 13 11 10 16 16 C 1.46503 * 119.99971 * 179.97438 * 15 13 11 17 17 C 1.52995 * 109.47250 * 180.02562 * 16 15 13 18 18 C 1.53007 * 109.47360 * 300.00194 * 17 16 15 19 19 C 1.52998 * 109.47540 * 60.00290 * 17 16 15 20 20 C 1.50702 * 109.47282 * 180.02562 * 17 16 15 21 21 H 1.07997 * 119.99694 * 359.97438 * 20 17 16 22 22 C 1.37876 * 120.00283 * 179.97438 * 20 17 16 23 23 N 1.31519 * 120.00001 * 359.97438 * 22 20 17 24 24 Si 1.86799 * 120.00110 * 179.97438 * 22 20 17 25 25 H 1.48497 * 109.46987 * 60.00102 * 24 22 20 26 26 H 1.48507 * 109.47093 * 179.97438 * 24 22 20 27 27 H 1.48495 * 109.46892 * 299.99999 * 24 22 20 28 28 H 1.09001 * 109.46947 * 299.99513 * 1 2 3 29 29 H 1.08999 * 109.47021 * 59.99573 * 1 2 3 30 30 H 1.09003 * 109.47331 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46850 * 55.00378 * 4 2 1 32 32 H 1.08995 * 109.47365 * 295.00386 * 4 2 1 33 33 H 1.08001 * 122.53741 * 0.05729 * 6 5 4 34 34 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 36 36 H 0.96996 * 120.00214 * 94.99670 * 10 2 1 37 37 H 0.97003 * 120.00002 * 0.02562 * 15 13 11 38 38 H 1.08994 * 109.47448 * 300.00778 * 16 15 13 39 39 H 1.09003 * 109.46708 * 60.00693 * 16 15 13 40 40 H 1.09004 * 109.46856 * 59.99655 * 18 17 16 41 41 H 1.08996 * 109.47221 * 180.02562 * 18 17 16 42 42 H 1.09002 * 109.46700 * 300.00510 * 18 17 16 43 43 H 1.09004 * 109.47172 * 59.99728 * 19 17 16 44 44 H 1.08997 * 109.47869 * 180.02562 * 19 17 16 45 45 H 1.09004 * 109.46687 * 300.00351 * 19 17 16 46 46 H 0.96997 * 119.99950 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7213 -1.2493 5 6 3.5419 -0.6150 -1.3127 6 6 4.3978 -1.4851 -0.7748 7 6 5.7349 -1.1792 -0.9610 8 6 5.9649 -0.0577 -1.6456 9 16 4.4343 0.6761 -2.1067 10 7 2.0183 -0.6908 1.1962 11 6 2.1471 -0.0184 2.3571 12 8 1.8581 1.1590 2.4118 13 6 2.6447 -0.7231 3.5776 14 8 2.9332 -1.9006 3.5230 15 7 2.7739 -0.0507 4.7383 16 6 3.2611 -0.7416 5.9348 17 6 3.3129 0.2415 7.1059 18 6 4.2580 1.3947 6.7625 19 6 1.9107 0.7931 7.3712 20 6 3.8147 -0.4691 8.3366 21 1 4.0707 -1.5172 8.2882 22 6 3.9470 0.2188 9.5241 23 7 3.6358 1.4953 9.5828 24 14 4.5684 -0.6622 11.0496 25 1 5.9291 -1.1981 10.7920 26 1 4.6199 0.2924 12.1861 27 1 3.6506 -1.7809 11.3834 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5139 -0.8899 30 1 -0.3634 -1.0277 -0.0005 31 1 1.6054 -0.2617 -2.1370 32 1 1.7516 -1.7715 -1.2057 33 1 4.0722 -2.3623 -0.2354 34 1 6.5316 -1.7991 -0.5770 35 1 6.9415 0.3381 -1.8822 36 1 2.2490 -1.6319 1.1525 37 1 2.5436 0.8906 4.7818 38 1 2.5877 -1.5629 6.1797 39 1 4.2600 -1.1349 5.7457 40 1 3.8955 1.9087 5.8723 41 1 4.2952 2.0948 7.5970 42 1 5.2570 1.0016 6.5735 43 1 1.2373 -0.0284 7.6159 44 1 1.9476 1.4939 8.2053 45 1 1.5481 1.3072 6.4810 46 1 3.7293 1.9793 10.4182 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325499664.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:56 Heat of formation + Delta-G solvation = -68.148428 kcal Electronic energy + Delta-G solvation = -27031.829541 eV Core-core repulsion = 23240.143400 eV Total energy + Delta-G solvation = -3791.686141 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75462 -39.98638 -38.89230 -38.18819 -37.09754 -35.08023 -33.13935 -32.73459 -30.95839 -27.95678 -27.59899 -27.31327 -27.21560 -25.22895 -24.00464 -22.17920 -21.54288 -20.72538 -20.19661 -19.54476 -18.10384 -18.04248 -17.69589 -17.05896 -16.75535 -16.61999 -16.36727 -16.05245 -15.52987 -15.05931 -14.76760 -14.70545 -14.62328 -14.26657 -14.06849 -14.00014 -13.50356 -13.46351 -13.21680 -13.16110 -13.12812 -12.81194 -12.68721 -12.62939 -12.57944 -12.44008 -12.28136 -12.12526 -12.02739 -11.64631 -11.51480 -11.30614 -10.77198 -10.61517 -10.41138 -10.34130 -10.11637 -9.55510 -9.36747 -8.01708 -6.18560 0.07570 0.37850 0.73836 1.08415 1.37778 1.46016 1.47370 1.53899 1.84575 2.17758 2.45429 2.73178 3.22089 3.47140 3.66992 3.83260 4.17112 4.24989 4.32571 4.34172 4.46492 4.47106 4.65367 4.66856 4.75250 4.78311 4.84935 4.91785 5.01048 5.02774 5.05321 5.16042 5.17734 5.21717 5.28959 5.34773 5.40138 5.47341 5.59418 5.63759 5.66834 5.97649 6.10155 6.18191 6.40008 6.41975 6.76753 6.86298 6.98695 7.49538 8.97443 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017798 B = 0.002431 C = 0.002300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1572.834420 B =11513.023545 C =12168.702201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.143 3.857 3 H 0.076 0.924 4 C -0.050 4.050 5 C -0.182 4.182 6 C -0.147 4.147 7 C -0.148 4.148 8 C -0.223 4.223 9 S 0.088 5.912 10 N -0.679 5.679 11 C 0.514 3.486 12 O -0.543 6.543 13 C 0.496 3.504 14 O -0.550 6.550 15 N -0.683 5.683 16 C 0.144 3.856 17 C 0.052 3.948 18 C -0.123 4.123 19 C -0.124 4.124 20 C -0.528 4.528 21 H 0.052 0.948 22 C 0.027 3.973 23 N -0.901 5.901 24 Si 0.948 3.052 25 H -0.275 1.275 26 H -0.285 1.285 27 H -0.275 1.275 28 H 0.042 0.958 29 H 0.093 0.907 30 H 0.075 0.925 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.147 0.853 34 H 0.148 0.852 35 H 0.177 0.823 36 H 0.417 0.583 37 H 0.412 0.588 38 H 0.055 0.945 39 H 0.053 0.947 40 H 0.028 0.972 41 H 0.064 0.936 42 H 0.022 0.978 43 H 0.024 0.976 44 H 0.063 0.937 45 H 0.029 0.971 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.742 -3.367 -25.918 26.279 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.039 3.961 3 H 0.094 0.906 4 C -0.089 4.089 5 C -0.299 4.299 6 C -0.177 4.177 7 C -0.178 4.178 8 C -0.358 4.358 9 S 0.352 5.648 10 N -0.332 5.332 11 C 0.294 3.706 12 O -0.420 6.420 13 C 0.276 3.724 14 O -0.429 6.429 15 N -0.334 5.334 16 C 0.021 3.979 17 C 0.051 3.949 18 C -0.181 4.181 19 C -0.182 4.182 20 C -0.567 4.567 21 H 0.070 0.930 22 C -0.173 4.173 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.201 1.201 26 H -0.211 1.211 27 H -0.200 1.200 28 H 0.062 0.938 29 H 0.111 0.889 30 H 0.094 0.906 31 H 0.134 0.866 32 H 0.130 0.870 33 H 0.164 0.836 34 H 0.165 0.835 35 H 0.195 0.805 36 H 0.255 0.745 37 H 0.250 0.750 38 H 0.073 0.927 39 H 0.071 0.929 40 H 0.047 0.953 41 H 0.082 0.918 42 H 0.041 0.959 43 H 0.043 0.957 44 H 0.082 0.918 45 H 0.048 0.952 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -3.129 -1.899 -26.598 26.848 hybrid contribution 1.108 -1.520 2.090 2.812 sum -2.020 -3.419 -24.507 24.827 Atomic orbital electron populations 1.22169 0.92935 1.03599 1.03146 1.21250 0.95248 0.96921 0.82678 0.90563 1.20566 0.86977 1.03857 0.97528 1.24664 1.00232 0.99164 1.05837 1.20354 0.92628 1.01949 1.02763 1.20454 0.97723 0.98270 1.01344 1.25883 1.02025 1.00721 1.07204 1.84231 0.97972 1.27367 1.55279 1.45814 1.64242 1.14992 1.08181 1.19981 0.78919 0.86627 0.85026 1.90747 1.49946 1.16162 1.85173 1.20409 0.79767 0.87016 0.85161 1.90701 1.50671 1.16060 1.85437 1.46075 1.63140 1.15139 1.09086 1.21535 0.97710 0.95479 0.83187 1.18360 0.93459 0.92124 0.90953 1.21706 0.97575 0.99592 0.99246 1.21707 0.96429 0.99895 1.00135 1.21230 1.44459 0.96247 0.94760 0.92996 1.25500 0.95328 0.95485 1.00982 1.69921 1.48547 1.08681 1.26846 0.85767 0.78882 0.78413 0.79453 1.20084 1.21098 1.20036 0.93848 0.88853 0.90596 0.86557 0.87005 0.83586 0.83451 0.80522 0.74545 0.75020 0.92701 0.92854 0.95306 0.91759 0.95864 0.95708 0.91781 0.95231 0.93027 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.17 9.48 71.98 0.68 -1.48 16 2 C 0.14 2.32 2.56 44.99 0.12 2.43 16 3 H 0.08 1.57 7.58 -2.39 -0.02 1.55 16 4 C -0.05 -0.54 5.25 29.85 0.16 -0.38 16 5 C -0.18 -2.90 5.52 24.59 0.14 -2.76 16 6 C -0.15 -2.58 9.85 21.22 0.21 -2.37 16 7 C -0.15 -2.67 10.18 21.22 0.22 -2.46 16 8 C -0.22 -3.82 11.23 66.72 0.75 -3.07 16 9 S 0.09 1.46 23.33 -56.49 -1.32 0.15 16 10 N -0.68 -14.42 4.65 -443.83 -2.06 -16.48 16 11 C 0.51 15.17 7.85 87.27 0.69 15.86 16 12 O -0.54 -18.29 16.14 -3.26 -0.05 -18.34 16 13 C 0.50 17.05 7.89 87.27 0.69 17.74 16 14 O -0.55 -20.37 16.48 -3.24 -0.05 -20.42 16 15 N -0.68 -25.18 4.95 -464.42 -2.30 -27.48 16 16 C 0.14 6.02 4.50 86.38 0.39 6.41 16 17 C 0.05 2.41 0.50 -52.93 -0.03 2.39 16 18 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 19 C -0.12 -5.68 8.08 71.98 0.58 -5.10 16 20 C -0.53 -27.64 8.01 25.60 0.21 -27.44 16 21 H 0.05 2.71 7.74 -2.91 -0.02 2.69 16 22 C 0.03 1.41 5.15 84.65 0.44 1.85 16 23 N -0.90 -48.58 9.35 21.45 0.20 -48.38 16 24 Si 0.95 42.30 29.54 68.60 2.03 44.33 16 25 H -0.28 -12.13 7.11 99.48 0.71 -11.42 16 26 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 28 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 29 H 0.09 0.83 8.14 -2.39 -0.02 0.81 16 30 H 0.08 0.82 8.14 -2.39 -0.02 0.81 16 31 H 0.12 0.80 8.14 -2.39 -0.02 0.78 16 32 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 33 H 0.15 2.26 8.06 -2.91 -0.02 2.24 16 34 H 0.15 2.30 8.06 -2.91 -0.02 2.28 16 35 H 0.18 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.42 7.83 8.03 -92.71 -0.74 7.08 16 37 H 0.41 14.97 5.64 -92.71 -0.52 14.45 16 38 H 0.05 2.36 8.14 -2.39 -0.02 2.34 16 39 H 0.05 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.03 1.17 6.86 -2.39 -0.02 1.15 16 41 H 0.06 3.28 6.07 -2.39 -0.01 3.27 16 42 H 0.02 1.04 8.14 -2.39 -0.02 1.02 16 43 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 44 H 0.06 3.26 6.07 -2.39 -0.01 3.24 16 45 H 0.03 1.19 6.86 -2.39 -0.02 1.17 16 46 H 0.26 13.55 8.31 -92.71 -0.77 12.78 16 Total: -1.00 -61.85 390.52 1.98 -59.87 By element: Atomic # 1 Polarization: 30.53 SS G_CDS: -0.26 Total: 30.26 kcal Atomic # 6 Polarization: -9.31 SS G_CDS: 5.80 Total: -3.51 kcal Atomic # 7 Polarization: -88.17 SS G_CDS: -4.16 Total: -92.34 kcal Atomic # 8 Polarization: -38.66 SS G_CDS: -0.11 Total: -38.77 kcal Atomic # 14 Polarization: 42.30 SS G_CDS: 2.03 Total: 44.33 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -1.32 Total: 0.15 kcal Total: -61.85 1.98 -59.87 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325499664.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.274 kcal (2) G-P(sol) polarization free energy of solvation -61.854 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.128 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.874 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.148 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds