Wall clock time and date at job start Tue Mar 31 2020 20:27:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47086 * 120.00137 * 2 1 3 5 5 C 1.50702 * 109.47096 * 184.99906 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46502 * 109.46870 * 240.00108 * 2 1 3 11 11 C 1.34781 * 119.99672 * 84.99923 * 10 2 1 12 12 O 1.21346 * 120.00333 * 0.02562 * 11 10 2 13 13 C 1.49454 * 119.99577 * 179.97438 * 11 10 2 14 14 O 1.21346 * 120.00090 * 0.02562 * 13 11 10 15 15 N 1.34781 * 119.99800 * 179.97438 * 13 11 10 16 16 C 1.46498 * 120.00010 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.47462 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46740 * 300.00490 * 17 16 15 19 19 C 1.52998 * 109.47099 * 60.00148 * 17 16 15 20 20 C 1.50697 * 109.47458 * 180.02562 * 17 16 15 21 21 H 1.08003 * 119.99737 * 0.02562 * 20 17 16 22 22 C 1.37869 * 120.00165 * 179.97438 * 20 17 16 23 23 N 1.31519 * 120.00041 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 120.00370 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.46778 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47449 * 119.99953 * 24 22 20 27 27 H 1.48503 * 109.47421 * 240.00519 * 24 22 20 28 28 H 1.08997 * 109.46860 * 300.00022 * 1 2 3 29 29 H 1.08999 * 109.47292 * 59.99452 * 1 2 3 30 30 H 1.08994 * 109.47427 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46856 * 64.99851 * 4 2 1 32 32 H 1.08996 * 109.47050 * 304.99994 * 4 2 1 33 33 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 34 34 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 36 36 H 0.96995 * 120.00309 * 265.00438 * 10 2 1 37 37 H 0.96995 * 119.99795 * 0.02562 * 15 13 11 38 38 H 1.09001 * 109.47699 * 300.01145 * 16 15 13 39 39 H 1.09006 * 109.46859 * 60.00675 * 16 15 13 40 40 H 1.08997 * 109.47355 * 59.99963 * 18 17 16 41 41 H 1.08999 * 109.46734 * 179.97438 * 18 17 16 42 42 H 1.08994 * 109.47243 * 299.99280 * 18 17 16 43 43 H 1.08997 * 109.47189 * 60.00073 * 19 17 16 44 44 H 1.08999 * 109.47388 * 180.02562 * 19 17 16 45 45 H 1.09001 * 109.47069 * 300.00658 * 19 17 16 46 46 H 0.96995 * 120.00212 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.2188 0.3637 1.9153 7 6 5.5965 0.2499 1.8439 8 6 6.0385 -0.8184 1.1787 9 16 4.6705 -1.7628 0.6039 10 7 2.0183 -0.6906 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8588 1.1593 -2.4115 13 6 2.6456 -0.7226 -3.5773 14 8 2.9342 -1.8999 -3.5229 15 7 2.7738 -0.0503 -4.7385 16 6 3.2632 -0.7406 -5.9344 17 6 3.3144 0.2425 -7.1057 18 6 1.9115 0.7919 -7.3719 19 6 4.2574 1.3970 -6.7616 20 6 3.8171 -0.4678 -8.3360 21 1 4.0740 -1.5157 -8.2875 22 6 3.9481 0.2199 -9.5238 23 7 3.6348 1.4958 -9.5830 24 14 4.5720 -0.6603 -11.0488 25 1 4.8543 -2.0807 -10.7198 26 1 3.5408 -0.5942 -12.1152 27 1 5.8177 -0.0058 -11.5234 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.7516 -1.7715 1.2055 32 1 1.6054 -0.2618 2.1369 33 1 3.7290 1.1832 2.4203 34 1 6.2630 0.9739 2.2890 35 1 7.0774 -1.0667 1.0191 36 1 2.2489 -1.6317 -1.1528 37 1 2.5428 0.8908 -4.7820 38 1 4.2627 -1.1318 -5.7448 39 1 2.5914 -1.5634 -6.1793 40 1 1.5475 1.3055 -6.4822 41 1 1.9480 1.4926 -8.2061 42 1 1.2396 -0.0306 -7.6171 43 1 5.2568 1.0056 -6.5718 44 1 4.2936 2.0976 -7.5958 45 1 3.8934 1.9106 -5.8717 46 1 3.7274 1.9797 -10.4185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325499666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:27:00 Heat of formation + Delta-G solvation = -50.679907 kcal Electronic energy + Delta-G solvation = -27026.026949 eV Core-core repulsion = 23235.098299 eV Total energy + Delta-G solvation = -3790.928649 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.47708 -38.74402 -38.02314 -36.48742 -36.18658 -33.39069 -32.20359 -30.87724 -30.20136 -26.72127 -26.34035 -25.71478 -25.29384 -23.92014 -23.22218 -21.30405 -20.27680 -19.37702 -18.99878 -18.25890 -17.32097 -16.79097 -16.03599 -15.74760 -15.66362 -15.33955 -14.89428 -14.57180 -14.28144 -13.96269 -13.68202 -13.56460 -13.32383 -12.92776 -12.88871 -12.85145 -12.62267 -12.45607 -12.21087 -11.94985 -11.87609 -11.43178 -11.39382 -11.29489 -11.16739 -10.89529 -10.88921 -10.66943 -10.39473 -10.19703 -9.64548 -9.52205 -9.38099 -9.20369 -8.85076 -8.78543 -8.63932 -8.57718 -8.36818 -6.02387 -4.13110 0.77712 1.43221 1.69577 1.80503 2.52426 2.59912 3.27088 3.35778 3.39916 3.51362 3.93292 4.32243 4.39580 4.49900 4.71533 4.84446 4.88016 5.02903 5.14071 5.24324 5.27577 5.35208 5.39863 5.42521 5.68411 5.87506 5.94215 6.07186 6.12930 6.20817 6.24912 6.27556 6.48147 6.65321 6.84088 6.86043 6.95329 7.01259 7.12596 7.34254 7.55907 7.68115 7.73967 8.00116 8.00711 8.13897 8.34149 8.43328 8.87463 9.52879 10.99063 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.002523 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.019860 B =11094.316424 C =11822.796995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.144 3.856 3 H 0.096 0.904 4 C -0.056 4.056 5 C -0.180 4.180 6 C -0.138 4.138 7 C -0.136 4.136 8 C -0.214 4.214 9 S 0.110 5.890 10 N -0.701 5.701 11 C 0.511 3.489 12 O -0.520 6.520 13 C 0.495 3.505 14 O -0.534 6.534 15 N -0.681 5.681 16 C 0.128 3.872 17 C 0.056 3.944 18 C -0.133 4.133 19 C -0.133 4.133 20 C -0.507 4.507 21 H 0.059 0.941 22 C 0.066 3.934 23 N -0.884 5.884 24 Si 0.894 3.106 25 H -0.273 1.273 26 H -0.284 1.284 27 H -0.284 1.284 28 H 0.069 0.931 29 H 0.067 0.933 30 H 0.060 0.940 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.138 0.862 34 H 0.138 0.862 35 H 0.163 0.837 36 H 0.409 0.591 37 H 0.410 0.590 38 H 0.061 0.939 39 H 0.061 0.939 40 H 0.008 0.992 41 H 0.087 0.913 42 H 0.027 0.973 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.008 0.992 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.203 -2.648 24.325 24.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.039 3.961 3 H 0.114 0.886 4 C -0.096 4.096 5 C -0.298 4.298 6 C -0.168 4.168 7 C -0.167 4.167 8 C -0.350 4.350 9 S 0.374 5.626 10 N -0.355 5.355 11 C 0.292 3.708 12 O -0.395 6.395 13 C 0.274 3.726 14 O -0.412 6.412 15 N -0.332 5.332 16 C 0.006 3.994 17 C 0.055 3.945 18 C -0.191 4.191 19 C -0.191 4.191 20 C -0.545 4.545 21 H 0.077 0.923 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.722 3.278 25 H -0.197 1.197 26 H -0.211 1.211 27 H -0.211 1.211 28 H 0.088 0.912 29 H 0.086 0.914 30 H 0.079 0.921 31 H 0.101 0.899 32 H 0.119 0.881 33 H 0.156 0.844 34 H 0.156 0.844 35 H 0.180 0.820 36 H 0.245 0.755 37 H 0.248 0.752 38 H 0.080 0.920 39 H 0.080 0.920 40 H 0.027 0.973 41 H 0.106 0.894 42 H 0.046 0.954 43 H 0.046 0.954 44 H 0.105 0.895 45 H 0.027 0.973 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.327 -3.821 23.330 23.755 hybrid contribution 0.673 0.893 -0.071 1.120 sum -1.654 -2.928 23.260 23.501 Atomic orbital electron populations 1.22198 0.94292 1.02646 1.03167 1.21089 0.94294 0.97846 0.82868 0.88607 1.20505 0.88331 1.02243 0.98512 1.24430 0.99181 1.00339 1.05818 1.20098 0.93679 0.99954 1.03095 1.20156 0.95442 0.98995 1.02092 1.25658 1.02580 1.00675 1.06099 1.84516 0.96495 1.26559 1.55016 1.45836 1.66085 1.14733 1.08835 1.20466 0.78498 0.87003 0.84857 1.90743 1.48434 1.15396 1.84911 1.19981 0.80635 0.87223 0.84766 1.90719 1.50106 1.15317 1.85051 1.46213 1.62673 1.15172 1.09176 1.21933 0.98191 0.96275 0.82958 1.18378 0.93458 0.91788 0.90852 1.21854 0.96557 1.00531 1.00179 1.21851 0.97744 1.00107 0.99391 1.20995 1.43866 0.96316 0.93335 0.92298 1.24884 0.95076 0.94858 0.98696 1.69820 1.48279 1.07917 1.26259 0.86507 0.78453 0.79921 0.82937 1.19749 1.21056 1.21063 0.91209 0.91403 0.92067 0.89907 0.88062 0.84380 0.84386 0.81959 0.75499 0.75236 0.92047 0.92028 0.97277 0.89443 0.95351 0.95370 0.89454 0.97282 0.93006 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.32 9.48 37.16 0.35 -0.97 16 2 C 0.14 1.33 2.56 -67.93 -0.17 1.16 16 3 H 0.10 1.03 7.58 -51.93 -0.39 0.64 16 4 C -0.06 -0.39 5.25 -27.88 -0.15 -0.54 16 5 C -0.18 -1.63 5.49 -36.00 -0.20 -1.83 16 6 C -0.14 -1.22 10.05 -41.21 -0.41 -1.64 16 7 C -0.14 -1.23 10.18 -41.21 -0.42 -1.65 16 8 C -0.21 -2.04 11.23 29.04 0.33 -1.71 16 9 S 0.11 1.11 23.30 -107.50 -2.51 -1.40 16 10 N -0.70 -8.34 4.78 -54.23 -0.26 -8.60 16 11 C 0.51 7.92 7.85 -11.58 -0.09 7.83 16 12 O -0.52 -8.98 16.14 5.50 0.09 -8.89 16 13 C 0.49 8.82 7.89 -11.58 -0.09 8.73 16 14 O -0.53 -10.30 16.48 5.50 0.09 -10.21 16 15 N -0.68 -12.84 4.95 -60.73 -0.30 -13.14 16 16 C 0.13 2.71 4.50 -4.04 -0.02 2.69 16 17 C 0.06 1.31 0.50 -155.66 -0.08 1.23 16 18 C -0.13 -3.07 8.08 37.16 0.30 -2.77 16 19 C -0.13 -3.08 8.08 37.16 0.30 -2.78 16 20 C -0.51 -13.20 8.01 -34.44 -0.28 -13.48 16 21 H 0.06 1.54 7.74 -52.48 -0.41 1.13 16 22 C 0.07 1.74 5.15 -17.82 -0.09 1.65 16 23 N -0.88 -23.67 9.35 55.43 0.52 -23.15 16 24 Si 0.89 20.66 29.54 -169.99 -5.02 15.63 16 25 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.17 16 27 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 28 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 31 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 32 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.14 0.97 8.06 -52.49 -0.42 0.54 16 34 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 35 H 0.16 1.25 8.06 -52.49 -0.42 0.83 16 36 H 0.41 4.63 8.05 -40.82 -0.33 4.30 16 37 H 0.41 7.64 5.63 -40.82 -0.23 7.41 16 38 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 39 H 0.06 1.33 8.14 -51.93 -0.42 0.91 16 40 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 41 H 0.09 2.21 6.07 -51.93 -0.32 1.90 16 42 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.03 0.63 8.14 -51.93 -0.42 0.21 16 44 H 0.09 2.22 6.07 -51.93 -0.32 1.90 16 45 H 0.01 0.17 6.86 -51.93 -0.36 -0.18 16 46 H 0.26 6.70 8.31 -40.82 -0.34 6.36 16 LS Contribution 390.81 15.07 5.89 5.89 Total: -1.00 -29.17 390.81 -9.13 -38.30 By element: Atomic # 1 Polarization: 16.55 SS G_CDS: -6.91 Total: 9.64 kcal Atomic # 6 Polarization: -3.36 SS G_CDS: -0.72 Total: -4.08 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.04 Total: -44.89 kcal Atomic # 8 Polarization: -19.28 SS G_CDS: 0.18 Total: -19.10 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Atomic # 16 Polarization: 1.11 SS G_CDS: -2.51 Total: -1.40 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -29.17 -9.13 -38.30 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325499666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.377 kcal (2) G-P(sol) polarization free energy of solvation -29.175 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.680 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds