Wall clock time and date at job start Tue Mar 31 2020 20:26:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.08997 * 109.46949 * 2 1 4 4 C 1.52995 * 109.47086 * 120.00137 * 2 1 3 5 5 C 1.50702 * 109.47096 * 184.99906 * 4 2 1 6 6 C 1.33381 * 125.20592 * 89.99839 * 5 4 2 7 7 C 1.38427 * 114.92374 * 179.97438 * 6 5 4 8 8 C 1.33387 * 114.91991 * 0.25034 * 7 6 5 9 9 S 1.75886 * 109.59194 * 359.63459 * 8 7 6 10 10 N 1.46502 * 109.46870 * 240.00108 * 2 1 3 11 11 C 1.34781 * 119.99672 * 84.99923 * 10 2 1 12 12 O 1.21346 * 120.00333 * 0.02562 * 11 10 2 13 13 C 1.49454 * 119.99577 * 179.97438 * 11 10 2 14 14 O 1.21346 * 120.00090 * 0.02562 * 13 11 10 15 15 N 1.34781 * 119.99800 * 179.97438 * 13 11 10 16 16 C 1.46498 * 120.00010 * 179.97438 * 15 13 11 17 17 C 1.52998 * 109.47462 * 180.02562 * 16 15 13 18 18 C 1.53000 * 109.46740 * 300.00490 * 17 16 15 19 19 C 1.52998 * 109.47099 * 60.00148 * 17 16 15 20 20 C 1.50697 * 109.47458 * 180.02562 * 17 16 15 21 21 H 1.08003 * 119.99737 * 0.02562 * 20 17 16 22 22 C 1.37869 * 120.00165 * 179.97438 * 20 17 16 23 23 N 1.31519 * 120.00041 * 0.02562 * 22 20 17 24 24 Si 1.86800 * 120.00370 * 179.97438 * 22 20 17 25 25 H 1.48508 * 109.46778 * 359.97438 * 24 22 20 26 26 H 1.48493 * 109.47449 * 119.99953 * 24 22 20 27 27 H 1.48503 * 109.47421 * 240.00519 * 24 22 20 28 28 H 1.08997 * 109.46860 * 300.00022 * 1 2 3 29 29 H 1.08999 * 109.47292 * 59.99452 * 1 2 3 30 30 H 1.08994 * 109.47427 * 180.02562 * 1 2 3 31 31 H 1.08996 * 109.46856 * 64.99851 * 4 2 1 32 32 H 1.08996 * 109.47050 * 304.99994 * 4 2 1 33 33 H 1.08002 * 122.53744 * 359.94345 * 6 5 4 34 34 H 1.08002 * 122.53759 * 179.97438 * 7 6 5 35 35 H 1.08002 * 125.20431 * 179.75072 * 8 7 6 36 36 H 0.96995 * 120.00309 * 265.00438 * 10 2 1 37 37 H 0.96995 * 119.99795 * 0.02562 * 15 13 11 38 38 H 1.09001 * 109.47699 * 300.01145 * 16 15 13 39 39 H 1.09006 * 109.46859 * 60.00675 * 16 15 13 40 40 H 1.08997 * 109.47355 * 59.99963 * 18 17 16 41 41 H 1.08999 * 109.46734 * 179.97438 * 18 17 16 42 42 H 1.08994 * 109.47243 * 299.99280 * 18 17 16 43 43 H 1.08997 * 109.47189 * 60.00073 * 19 17 16 44 44 H 1.08999 * 109.47388 * 180.02562 * 19 17 16 45 45 H 1.09001 * 109.47069 * 300.00658 * 19 17 16 46 46 H 0.96995 * 120.00212 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7213 1.2492 5 6 3.5419 -0.6149 1.3127 6 6 4.2188 0.3637 1.9153 7 6 5.5965 0.2499 1.8439 8 6 6.0385 -0.8184 1.1787 9 16 4.6705 -1.7628 0.6039 10 7 2.0183 -0.6906 -1.1962 11 6 2.1470 -0.0182 -2.3572 12 8 1.8588 1.1593 -2.4115 13 6 2.6456 -0.7226 -3.5773 14 8 2.9342 -1.8999 -3.5229 15 7 2.7738 -0.0503 -4.7385 16 6 3.2632 -0.7406 -5.9344 17 6 3.3144 0.2425 -7.1057 18 6 1.9115 0.7919 -7.3719 19 6 4.2574 1.3970 -6.7616 20 6 3.8171 -0.4678 -8.3360 21 1 4.0740 -1.5157 -8.2875 22 6 3.9481 0.2199 -9.5238 23 7 3.6348 1.4958 -9.5830 24 14 4.5720 -0.6603 -11.0488 25 1 4.8543 -2.0807 -10.7198 26 1 3.5408 -0.5942 -12.1152 27 1 5.8177 -0.0058 -11.5234 28 1 -0.3633 0.5138 0.8900 29 1 -0.3634 0.5139 -0.8899 30 1 -0.3634 -1.0276 0.0005 31 1 1.7516 -1.7715 1.2055 32 1 1.6054 -0.2618 2.1369 33 1 3.7290 1.1832 2.4203 34 1 6.2630 0.9739 2.2890 35 1 7.0774 -1.0667 1.0191 36 1 2.2489 -1.6317 -1.1528 37 1 2.5428 0.8908 -4.7820 38 1 4.2627 -1.1318 -5.7448 39 1 2.5914 -1.5634 -6.1793 40 1 1.5475 1.3055 -6.4822 41 1 1.9480 1.4926 -8.2061 42 1 1.2396 -0.0306 -7.6171 43 1 5.2568 1.0056 -6.5718 44 1 4.2936 2.0976 -7.5958 45 1 3.8934 1.9106 -5.8717 46 1 3.7274 1.9797 -10.4185 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325499666.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:26:59 Heat of formation + Delta-G solvation = -67.821972 kcal Electronic energy + Delta-G solvation = -27026.770284 eV Core-core repulsion = 23235.098299 eV Total energy + Delta-G solvation = -3791.671985 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.75991 -39.97654 -38.87572 -38.19439 -37.15187 -35.08363 -33.14311 -32.73819 -30.91967 -27.96280 -27.60002 -27.34651 -27.21044 -25.19846 -24.03749 -22.20558 -21.53528 -20.72134 -20.06502 -19.68536 -18.14172 -17.97636 -17.73226 -17.06228 -16.80541 -16.60274 -16.34369 -16.05038 -15.52403 -15.05951 -14.77985 -14.73843 -14.60251 -14.27199 -14.06375 -13.97389 -13.52809 -13.45942 -13.22700 -13.14813 -13.13844 -12.81660 -12.71715 -12.59750 -12.55834 -12.45587 -12.29010 -12.12501 -11.99886 -11.59092 -11.51954 -11.30747 -10.76604 -10.61908 -10.42274 -10.37674 -10.12267 -9.54379 -9.38548 -8.02209 -6.18797 0.08717 0.36457 0.74186 1.10742 1.37624 1.42775 1.47273 1.56504 1.85551 2.16417 2.45061 2.71503 3.21702 3.45654 3.69133 3.84195 4.11797 4.24549 4.33870 4.35519 4.46189 4.54614 4.64978 4.66710 4.74721 4.79273 4.85637 4.91626 4.99978 5.02704 5.05282 5.15985 5.20308 5.21446 5.28213 5.33944 5.40636 5.47208 5.61776 5.63691 5.67028 5.95219 6.10025 6.18031 6.38290 6.40764 6.74358 6.85985 6.97420 7.49370 8.97323 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017419 B = 0.002523 C = 0.002368 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1607.019860 B =11094.316424 C =11822.796995 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.141 3.859 3 H 0.083 0.917 4 C -0.050 4.050 5 C -0.181 4.181 6 C -0.145 4.145 7 C -0.142 4.142 8 C -0.227 4.227 9 S 0.066 5.934 10 N -0.684 5.684 11 C 0.515 3.485 12 O -0.540 6.540 13 C 0.494 3.506 14 O -0.549 6.549 15 N -0.682 5.682 16 C 0.143 3.857 17 C 0.051 3.949 18 C -0.124 4.124 19 C -0.123 4.123 20 C -0.526 4.526 21 H 0.051 0.949 22 C 0.026 3.974 23 N -0.901 5.901 24 Si 0.949 3.051 25 H -0.272 1.272 26 H -0.282 1.282 27 H -0.283 1.283 28 H 0.097 0.903 29 H 0.042 0.958 30 H 0.071 0.929 31 H 0.095 0.905 32 H 0.133 0.867 33 H 0.160 0.840 34 H 0.156 0.844 35 H 0.173 0.827 36 H 0.413 0.587 37 H 0.412 0.588 38 H 0.053 0.947 39 H 0.054 0.946 40 H 0.029 0.971 41 H 0.064 0.936 42 H 0.024 0.976 43 H 0.022 0.978 44 H 0.064 0.936 45 H 0.028 0.972 46 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.842 -2.632 26.307 26.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.038 3.962 3 H 0.101 0.899 4 C -0.089 4.089 5 C -0.299 4.299 6 C -0.175 4.175 7 C -0.172 4.172 8 C -0.362 4.362 9 S 0.330 5.670 10 N -0.337 5.337 11 C 0.296 3.704 12 O -0.417 6.417 13 C 0.275 3.725 14 O -0.428 6.428 15 N -0.334 5.334 16 C 0.021 3.979 17 C 0.050 3.950 18 C -0.181 4.181 19 C -0.181 4.181 20 C -0.565 4.565 21 H 0.069 0.931 22 C -0.173 4.173 23 N -0.540 5.540 24 Si 0.775 3.225 25 H -0.196 1.196 26 H -0.208 1.208 27 H -0.209 1.209 28 H 0.115 0.885 29 H 0.062 0.938 30 H 0.090 0.910 31 H 0.113 0.887 32 H 0.151 0.849 33 H 0.177 0.823 34 H 0.174 0.826 35 H 0.191 0.809 36 H 0.250 0.750 37 H 0.250 0.750 38 H 0.071 0.929 39 H 0.073 0.927 40 H 0.048 0.952 41 H 0.082 0.918 42 H 0.043 0.957 43 H 0.041 0.959 44 H 0.083 0.917 45 H 0.047 0.953 46 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -2.973 -3.821 25.356 25.814 hybrid contribution 0.885 0.889 -0.595 1.388 sum -2.088 -2.932 24.761 25.021 Atomic orbital electron populations 1.22167 0.92906 1.03413 1.03318 1.21328 0.95284 0.97206 0.82402 0.89855 1.20586 0.86951 1.03073 0.98273 1.24690 0.99960 0.99770 1.05461 1.20429 0.93751 1.00397 1.02963 1.20496 0.96115 0.99022 1.01602 1.25883 1.02913 1.00891 1.06548 1.84630 0.98116 1.28088 1.56184 1.45913 1.64401 1.14851 1.08547 1.19964 0.78869 0.86640 0.84960 1.90740 1.49859 1.15978 1.85137 1.20433 0.79839 0.87053 0.85207 1.90708 1.50584 1.16095 1.85408 1.46065 1.63123 1.15173 1.09034 1.21541 0.97673 0.95512 0.83216 1.18370 0.93516 0.92128 0.90938 1.21703 0.96390 0.99902 1.00151 1.21699 0.97571 0.99564 0.99263 1.21276 1.44218 0.96241 0.94720 0.93063 1.25497 0.95356 0.95495 1.00977 1.69932 1.48646 1.08702 1.26712 0.85652 0.77872 0.78932 0.80018 1.19633 1.20831 1.20892 0.88465 0.93845 0.90994 0.88660 0.84921 0.82280 0.82607 0.80919 0.75036 0.74990 0.92902 0.92721 0.95216 0.91751 0.95714 0.95853 0.91747 0.95278 0.93041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.13 9.48 71.98 0.68 -1.45 16 2 C 0.14 2.29 2.56 44.99 0.12 2.40 16 3 H 0.08 1.62 7.58 -2.39 -0.02 1.60 16 4 C -0.05 -0.54 5.25 29.85 0.16 -0.38 16 5 C -0.18 -2.91 5.49 24.59 0.14 -2.78 16 6 C -0.15 -2.25 10.05 21.22 0.21 -2.03 16 7 C -0.14 -2.33 10.18 21.22 0.22 -2.11 16 8 C -0.23 -4.13 11.23 66.72 0.75 -3.38 16 9 S 0.07 1.29 23.30 -56.49 -1.32 -0.03 16 10 N -0.68 -15.32 4.78 -443.86 -2.12 -17.44 16 11 C 0.52 15.53 7.85 87.27 0.69 16.22 16 12 O -0.54 -18.19 16.14 -3.24 -0.05 -18.24 16 13 C 0.49 17.39 7.89 87.27 0.69 18.08 16 14 O -0.55 -20.99 16.48 -3.24 -0.05 -21.04 16 15 N -0.68 -25.45 4.95 -464.40 -2.30 -27.75 16 16 C 0.14 6.07 4.50 86.38 0.39 6.46 16 17 C 0.05 2.40 0.50 -52.93 -0.03 2.37 16 18 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 19 C -0.12 -5.69 8.08 71.98 0.58 -5.11 16 20 C -0.53 -27.63 8.01 25.60 0.21 -27.42 16 21 H 0.05 2.71 7.74 -2.91 -0.02 2.68 16 22 C 0.03 1.39 5.15 84.65 0.44 1.83 16 23 N -0.90 -48.59 9.35 21.45 0.20 -48.39 16 24 Si 0.95 42.47 29.54 68.60 2.03 44.50 16 25 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 28 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.04 0.81 8.14 -2.39 -0.02 0.80 16 30 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.09 0.85 8.14 -2.39 -0.02 0.83 16 32 H 0.13 0.69 8.14 -2.39 -0.02 0.67 16 33 H 0.16 1.72 8.06 -2.91 -0.02 1.69 16 34 H 0.16 1.89 8.06 -2.91 -0.02 1.87 16 35 H 0.17 2.58 8.06 -2.91 -0.02 2.55 16 36 H 0.41 8.79 8.05 -92.71 -0.75 8.05 16 37 H 0.41 15.07 5.63 -92.71 -0.52 14.55 16 38 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 39 H 0.05 2.37 8.14 -2.38 -0.02 2.35 16 40 H 0.03 1.20 6.86 -2.39 -0.02 1.18 16 41 H 0.06 3.28 6.07 -2.39 -0.01 3.26 16 42 H 0.02 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.02 1.05 8.14 -2.39 -0.02 1.03 16 44 H 0.06 3.29 6.07 -2.39 -0.01 3.28 16 45 H 0.03 1.18 6.86 -2.39 -0.02 1.16 16 46 H 0.26 13.47 8.31 -92.71 -0.77 12.70 16 Total: -1.00 -62.45 390.81 1.92 -60.53 By element: Atomic # 1 Polarization: 30.56 SS G_CDS: -0.27 Total: 30.29 kcal Atomic # 6 Polarization: -8.23 SS G_CDS: 5.81 Total: -2.43 kcal Atomic # 7 Polarization: -89.36 SS G_CDS: -4.22 Total: -93.58 kcal Atomic # 8 Polarization: -39.18 SS G_CDS: -0.11 Total: -39.28 kcal Atomic # 14 Polarization: 42.47 SS G_CDS: 2.03 Total: 44.50 kcal Atomic # 16 Polarization: 1.29 SS G_CDS: -1.32 Total: -0.03 kcal Total: -62.45 1.92 -60.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325499666.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.296 kcal (2) G-P(sol) polarization free energy of solvation -62.450 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -69.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.924 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.526 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds