Wall clock time and date at job start Tue Mar 31 2020 21:12:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47046 * 2 1 4 4 C 1.46507 * 119.99987 * 95.87941 * 3 2 1 5 5 C 1.50705 * 109.46886 * 89.99950 * 4 3 2 6 6 C 1.33390 * 125.20312 * 89.99938 * 5 4 3 7 7 C 1.38426 * 114.91809 * 179.97438 * 6 5 4 8 8 C 1.33384 * 114.92205 * 0.02562 * 7 6 5 9 9 S 1.75886 * 109.59621 * 359.75654 * 8 7 6 10 10 C 1.34773 * 120.00211 * 275.88082 * 3 2 1 11 11 O 1.21350 * 120.00110 * 183.56970 * 10 3 2 12 12 C 1.49453 * 119.99777 * 3.56396 * 10 3 2 13 13 O 1.21352 * 120.00028 * 5.07615 * 12 10 3 14 14 N 1.34783 * 119.99903 * 185.07766 * 12 10 3 15 15 C 1.46494 * 119.99829 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47190 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46736 * 299.99687 * 16 15 14 18 18 C 1.53002 * 109.47124 * 59.99506 * 16 15 14 19 19 C 1.50697 * 109.47078 * 179.97438 * 16 15 14 20 20 H 1.08000 * 120.00576 * 2.22715 * 19 16 15 21 21 C 1.37887 * 119.99530 * 182.22450 * 19 16 15 22 22 N 1.31513 * 119.99363 * 191.90634 * 21 19 16 23 23 Si 1.86793 * 120.00289 * 11.90477 * 21 19 16 24 24 H 1.48498 * 109.46911 * 87.94049 * 23 21 19 25 25 H 1.48496 * 109.47330 * 207.94494 * 23 21 19 26 26 H 1.48502 * 109.47109 * 327.94594 * 23 21 19 27 27 H 1.09006 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46745 * 299.99717 * 1 2 3 29 29 H 1.08995 * 109.47025 * 60.00172 * 1 2 3 30 30 H 1.09001 * 109.46906 * 239.99776 * 2 1 3 31 31 H 1.09003 * 109.47092 * 120.00162 * 2 1 3 32 32 H 1.08998 * 109.47298 * 209.99740 * 4 3 2 33 33 H 1.09003 * 109.46902 * 330.00377 * 4 3 2 34 34 H 1.08001 * 122.53605 * 359.95696 * 6 5 4 35 35 H 1.07998 * 122.53460 * 180.02562 * 7 6 5 36 36 H 1.08000 * 125.20220 * 180.02562 * 8 7 6 37 37 H 0.96993 * 119.99653 * 359.97438 * 14 12 10 38 38 H 1.09005 * 109.46969 * 299.99830 * 15 14 12 39 39 H 1.08998 * 109.47752 * 59.99456 * 15 14 12 40 40 H 1.09001 * 109.47133 * 70.31934 * 17 16 15 41 41 H 1.09003 * 109.46961 * 190.31499 * 17 16 15 42 42 H 1.08998 * 109.47101 * 310.32222 * 17 16 15 43 43 H 1.09005 * 109.46961 * 60.00250 * 18 16 15 44 44 H 1.08992 * 109.47116 * 180.02562 * 18 16 15 45 45 H 1.08998 * 109.47106 * 300.00406 * 18 16 15 46 46 H 0.96996 * 119.99577 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3851 2.0285 1.2621 5 6 3.8434 1.7793 1.5493 6 6 4.8495 2.5607 1.1537 7 6 6.1080 2.1297 1.5366 8 6 6.1239 0.9982 2.2427 9 16 4.4785 0.4171 2.4630 10 6 2.1302 2.0564 -1.1610 11 8 2.5954 3.1772 -1.1687 12 6 1.6815 1.4247 -2.4390 13 8 1.1325 0.3427 -2.4210 14 7 1.8867 2.0569 -3.6116 15 6 1.4463 1.4380 -4.8642 16 6 1.7975 2.3553 -6.0373 17 6 1.0944 3.7025 -5.8594 18 6 3.3115 2.5718 -6.0800 19 6 1.3451 1.7183 -7.3260 20 1 0.8240 0.7726 -7.3071 21 6 1.5964 2.3431 -8.5292 22 7 1.0074 1.9190 -9.6259 23 14 2.7733 3.7919 -8.6015 24 1 4.1580 3.2951 -8.8039 25 1 2.3961 4.6803 -9.7300 26 1 2.7014 4.5520 -7.3278 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.2081 3.1013 1.1851 33 1 1.7802 1.6174 2.0704 34 1 4.6939 3.4611 0.5780 35 1 7.0086 2.6689 1.2829 36 1 7.0111 0.5152 2.6247 37 1 2.3252 2.9219 -3.6259 38 1 1.9475 0.4784 -4.9912 39 1 0.3678 1.2833 -4.8337 40 1 1.5515 4.2443 -5.0313 41 1 1.1925 4.2871 -6.7742 42 1 0.0386 3.5360 -5.6459 43 1 3.8124 1.6120 -6.2067 44 1 3.5616 3.2256 -6.9154 45 1 3.6391 3.0323 -5.1480 46 1 1.1845 2.3582 -10.4724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001325689395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:07 Heat of formation + Delta-G solvation = -8.933089 kcal Electronic energy + Delta-G solvation = -27598.645082 eV Core-core repulsion = 23809.526710 eV Total energy + Delta-G solvation = -3789.118371 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -40.81780 -38.77380 -37.85176 -37.02732 -36.15347 -33.35649 -31.94765 -31.51355 -29.85156 -27.33890 -26.43148 -26.21359 -25.05025 -23.98082 -23.55300 -22.17188 -19.89595 -19.40012 -19.15418 -17.78900 -17.48704 -16.79648 -16.19222 -16.01166 -15.79906 -15.54147 -15.06319 -14.90744 -14.41295 -14.13496 -13.57799 -13.40943 -13.37309 -13.09740 -12.98537 -12.88536 -12.74388 -12.64219 -12.54216 -12.25922 -12.13599 -12.04687 -11.74847 -11.48752 -11.13528 -11.02707 -10.97062 -10.49021 -10.32725 -10.20154 -10.09620 -9.43851 -9.15132 -9.07479 -8.89243 -8.71437 -8.69314 -8.67766 -8.50904 -6.16858 -4.15673 0.66410 1.34748 1.56913 1.71796 2.29941 2.68247 3.24094 3.31682 3.34181 3.38264 3.62397 4.34056 4.45710 4.55913 4.75630 4.83684 4.88636 5.14277 5.19109 5.29505 5.33406 5.39256 5.41456 5.64704 5.67907 5.88051 5.90972 5.97319 6.02491 6.04631 6.13530 6.23638 6.30942 6.33700 6.39551 6.48025 6.56303 6.62853 6.66576 6.87864 6.93227 7.15703 7.37756 7.47169 7.68038 7.84611 8.23948 8.41729 8.86811 9.46375 10.96049 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002783 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.645983 B =10059.463272 C =10935.678426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.102 3.898 3 N -0.584 5.584 4 C 0.186 3.814 5 C -0.200 4.200 6 C -0.113 4.113 7 C -0.136 4.136 8 C -0.210 4.210 9 S 0.094 5.906 10 C 0.510 3.490 11 O -0.520 6.520 12 C 0.496 3.504 13 O -0.519 6.519 14 N -0.687 5.687 15 C 0.140 3.860 16 C 0.029 3.971 17 C -0.144 4.144 18 C -0.150 4.150 19 C -0.513 4.513 20 H 0.077 0.923 21 C 0.076 3.924 22 N -0.892 5.892 23 Si 0.883 3.117 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.246 1.246 27 H 0.066 0.934 28 H 0.046 0.954 29 H 0.070 0.930 30 H 0.106 0.894 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.092 0.908 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.163 0.837 37 H 0.408 0.592 38 H 0.069 0.931 39 H 0.070 0.930 40 H 0.024 0.976 41 H 0.057 0.943 42 H 0.047 0.953 43 H 0.054 0.946 44 H 0.043 0.957 45 H 0.031 0.969 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.881 -0.950 25.848 26.525 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.020 4.020 3 N -0.318 5.318 4 C 0.062 3.938 5 C -0.318 4.318 6 C -0.144 4.144 7 C -0.166 4.166 8 C -0.346 4.346 9 S 0.357 5.643 10 C 0.293 3.707 11 O -0.395 6.395 12 C 0.276 3.724 13 O -0.397 6.397 14 N -0.339 5.339 15 C 0.018 3.982 16 C 0.027 3.973 17 C -0.202 4.202 18 C -0.207 4.207 19 C -0.551 4.551 20 H 0.096 0.904 21 C -0.127 4.127 22 N -0.528 5.528 23 Si 0.716 3.284 24 H -0.214 1.214 25 H -0.233 1.233 26 H -0.172 1.172 27 H 0.085 0.915 28 H 0.065 0.935 29 H 0.089 0.911 30 H 0.124 0.876 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.110 0.890 34 H 0.163 0.837 35 H 0.158 0.842 36 H 0.181 0.819 37 H 0.245 0.755 38 H 0.087 0.913 39 H 0.088 0.912 40 H 0.043 0.957 41 H 0.076 0.924 42 H 0.066 0.934 43 H 0.073 0.927 44 H 0.062 0.938 45 H 0.050 0.950 46 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 5.046 -2.369 26.349 26.932 hybrid contribution 1.695 2.265 -0.926 2.977 sum 6.741 -0.104 25.423 26.302 Atomic orbital electron populations 1.22116 0.95041 1.02562 1.02086 1.21980 0.95409 0.80642 1.03949 1.47944 1.63298 1.15199 1.05313 1.19906 0.88265 1.00162 0.85492 1.24862 1.00049 0.99943 1.06943 1.20319 0.91302 1.01709 1.01082 1.20248 0.98719 0.97106 1.00551 1.25641 1.00074 1.01440 1.07396 1.84179 0.99605 1.26867 1.53661 1.20510 0.79048 0.85871 0.85293 1.90722 1.43300 1.18904 1.86564 1.19892 0.81473 0.86000 0.85043 1.90696 1.42022 1.20297 1.86675 1.46206 1.58007 1.23519 1.06121 1.21714 0.99673 0.96744 0.80086 1.18737 0.91830 0.92579 0.94126 1.22319 0.99940 0.98061 0.99841 1.22391 0.98738 1.00780 0.98778 1.20692 1.38224 1.08318 0.87875 0.90447 1.24967 0.95401 0.96725 0.95585 1.69930 1.41279 1.42151 0.99483 0.87320 0.81107 0.83288 0.76721 1.21359 1.23293 1.17176 0.91493 0.93537 0.91105 0.87559 0.91297 0.87741 0.88989 0.83679 0.84209 0.81933 0.75499 0.91301 0.91197 0.95685 0.92418 0.93365 0.92722 0.93847 0.95016 0.92513 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.64 9.63 37.16 0.36 -1.28 16 2 C 0.10 1.08 5.70 -4.04 -0.02 1.06 16 3 N -0.58 -6.75 2.47 -175.56 -0.43 -7.18 16 4 C 0.19 1.76 5.84 -5.19 -0.03 1.73 16 5 C -0.20 -1.99 6.09 -36.00 -0.22 -2.21 16 6 C -0.11 -1.19 10.05 -41.21 -0.41 -1.60 16 7 C -0.14 -1.25 10.18 -41.21 -0.42 -1.67 16 8 C -0.21 -1.77 11.23 29.04 0.33 -1.44 16 9 S 0.09 0.81 23.33 -107.50 -2.51 -1.70 16 10 C 0.51 7.31 7.69 -11.59 -0.09 7.22 16 11 O -0.52 -8.14 16.10 5.50 0.09 -8.06 16 12 C 0.50 7.92 7.61 -11.58 -0.09 7.83 16 13 O -0.52 -8.73 11.39 5.50 0.06 -8.67 16 14 N -0.69 -11.51 5.00 -60.73 -0.30 -11.81 16 15 C 0.14 2.68 4.48 -4.04 -0.02 2.67 16 16 C 0.03 0.61 0.50 -155.66 -0.08 0.54 16 17 C -0.14 -2.95 7.48 37.16 0.28 -2.67 16 18 C -0.15 -3.06 7.50 37.16 0.28 -2.78 16 19 C -0.51 -13.54 8.62 -34.44 -0.30 -13.83 16 20 H 0.08 2.22 7.99 -52.49 -0.42 1.81 16 21 C 0.08 2.09 5.34 -17.82 -0.10 2.00 16 22 N -0.89 -26.44 13.96 55.43 0.77 -25.67 16 23 Si 0.88 21.02 22.79 -169.99 -3.87 17.15 16 24 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 25 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.25 -5.36 4.54 56.52 0.26 -5.10 16 27 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 29 H 0.07 0.91 6.42 -51.93 -0.33 0.58 16 30 H 0.11 1.34 5.84 -51.93 -0.30 1.04 16 31 H 0.07 0.59 8.03 -51.93 -0.42 0.17 16 32 H 0.10 1.02 7.47 -51.93 -0.39 0.63 16 33 H 0.09 0.66 8.07 -51.93 -0.42 0.24 16 34 H 0.15 1.61 8.06 -52.49 -0.42 1.18 16 35 H 0.14 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.16 0.99 8.06 -52.49 -0.42 0.57 16 37 H 0.41 6.63 5.76 -40.82 -0.23 6.40 16 38 H 0.07 1.37 8.14 -51.93 -0.42 0.94 16 39 H 0.07 1.39 8.14 -51.93 -0.42 0.97 16 40 H 0.02 0.44 7.15 -51.93 -0.37 0.07 16 41 H 0.06 1.25 4.32 -51.93 -0.22 1.03 16 42 H 0.05 0.96 8.11 -51.93 -0.42 0.54 16 43 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 44 H 0.04 0.94 2.24 -51.93 -0.12 0.82 16 45 H 0.03 0.56 6.86 -51.93 -0.36 0.20 16 46 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 373.18 15.07 5.62 5.62 Total: -1.00 -29.77 373.18 -7.77 -37.54 By element: Atomic # 1 Polarization: 13.90 SS G_CDS: -6.67 Total: 7.24 kcal Atomic # 6 Polarization: -3.93 SS G_CDS: -0.53 Total: -4.47 kcal Atomic # 7 Polarization: -44.70 SS G_CDS: 0.04 Total: -44.66 kcal Atomic # 8 Polarization: -16.87 SS G_CDS: 0.15 Total: -16.72 kcal Atomic # 14 Polarization: 21.02 SS G_CDS: -3.87 Total: 17.15 kcal Atomic # 16 Polarization: 0.81 SS G_CDS: -2.51 Total: -1.70 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -29.77 -7.77 -37.54 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325689395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.609 kcal (2) G-P(sol) polarization free energy of solvation -29.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.165 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.542 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.933 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds