Wall clock time and date at job start Tue Mar 31 2020 21:12:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46494 * 109.47046 * 2 1 4 4 C 1.46507 * 119.99987 * 95.87941 * 3 2 1 5 5 C 1.50705 * 109.46886 * 89.99950 * 4 3 2 6 6 C 1.33390 * 125.20312 * 89.99938 * 5 4 3 7 7 C 1.38426 * 114.91809 * 179.97438 * 6 5 4 8 8 C 1.33384 * 114.92205 * 0.02562 * 7 6 5 9 9 S 1.75886 * 109.59621 * 359.75654 * 8 7 6 10 10 C 1.34773 * 120.00211 * 275.88082 * 3 2 1 11 11 O 1.21350 * 120.00110 * 183.56970 * 10 3 2 12 12 C 1.49453 * 119.99777 * 3.56396 * 10 3 2 13 13 O 1.21352 * 120.00028 * 5.07615 * 12 10 3 14 14 N 1.34783 * 119.99903 * 185.07766 * 12 10 3 15 15 C 1.46494 * 119.99829 * 180.02562 * 14 12 10 16 16 C 1.53004 * 109.47190 * 180.02562 * 15 14 12 17 17 C 1.53001 * 109.46736 * 299.99687 * 16 15 14 18 18 C 1.53002 * 109.47124 * 59.99506 * 16 15 14 19 19 C 1.50697 * 109.47078 * 179.97438 * 16 15 14 20 20 H 1.08000 * 120.00576 * 2.22715 * 19 16 15 21 21 C 1.37887 * 119.99530 * 182.22450 * 19 16 15 22 22 N 1.31513 * 119.99363 * 191.90634 * 21 19 16 23 23 Si 1.86793 * 120.00289 * 11.90477 * 21 19 16 24 24 H 1.48498 * 109.46911 * 87.94049 * 23 21 19 25 25 H 1.48496 * 109.47330 * 207.94494 * 23 21 19 26 26 H 1.48502 * 109.47109 * 327.94594 * 23 21 19 27 27 H 1.09006 * 109.46889 * 179.97438 * 1 2 3 28 28 H 1.08998 * 109.46745 * 299.99717 * 1 2 3 29 29 H 1.08995 * 109.47025 * 60.00172 * 1 2 3 30 30 H 1.09001 * 109.46906 * 239.99776 * 2 1 3 31 31 H 1.09003 * 109.47092 * 120.00162 * 2 1 3 32 32 H 1.08998 * 109.47298 * 209.99740 * 4 3 2 33 33 H 1.09003 * 109.46902 * 330.00377 * 4 3 2 34 34 H 1.08001 * 122.53605 * 359.95696 * 6 5 4 35 35 H 1.07998 * 122.53460 * 180.02562 * 7 6 5 36 36 H 1.08000 * 125.20220 * 180.02562 * 8 7 6 37 37 H 0.96993 * 119.99653 * 359.97438 * 14 12 10 38 38 H 1.09005 * 109.46969 * 299.99830 * 15 14 12 39 39 H 1.08998 * 109.47752 * 59.99456 * 15 14 12 40 40 H 1.09001 * 109.47133 * 70.31934 * 17 16 15 41 41 H 1.09003 * 109.46961 * 190.31499 * 17 16 15 42 42 H 1.08998 * 109.47101 * 310.32222 * 17 16 15 43 43 H 1.09005 * 109.46961 * 60.00250 * 18 16 15 44 44 H 1.08992 * 109.47116 * 180.02562 * 18 16 15 45 45 H 1.08998 * 109.47106 * 300.00406 * 18 16 15 46 46 H 0.96996 * 119.99577 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3851 2.0285 1.2621 5 6 3.8434 1.7793 1.5493 6 6 4.8495 2.5607 1.1537 7 6 6.1080 2.1297 1.5366 8 6 6.1239 0.9982 2.2427 9 16 4.4785 0.4171 2.4630 10 6 2.1302 2.0564 -1.1610 11 8 2.5954 3.1772 -1.1687 12 6 1.6815 1.4247 -2.4390 13 8 1.1325 0.3427 -2.4210 14 7 1.8867 2.0569 -3.6116 15 6 1.4463 1.4380 -4.8642 16 6 1.7975 2.3553 -6.0373 17 6 1.0944 3.7025 -5.8594 18 6 3.3115 2.5718 -6.0800 19 6 1.3451 1.7183 -7.3260 20 1 0.8240 0.7726 -7.3071 21 6 1.5964 2.3431 -8.5292 22 7 1.0074 1.9190 -9.6259 23 14 2.7733 3.7919 -8.6015 24 1 4.1580 3.2951 -8.8039 25 1 2.3961 4.6803 -9.7300 26 1 2.7014 4.5520 -7.3278 27 1 -0.3633 -1.0277 -0.0005 28 1 -0.3633 0.5138 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 1.8934 -0.5139 -0.8900 31 1 1.8934 -0.5139 0.8900 32 1 2.2081 3.1013 1.1851 33 1 1.7802 1.6174 2.0704 34 1 4.6939 3.4611 0.5780 35 1 7.0086 2.6689 1.2829 36 1 7.0111 0.5152 2.6247 37 1 2.3252 2.9219 -3.6259 38 1 1.9475 0.4784 -4.9912 39 1 0.3678 1.2833 -4.8337 40 1 1.5515 4.2443 -5.0313 41 1 1.1925 4.2871 -6.7742 42 1 0.0386 3.5360 -5.6459 43 1 3.8124 1.6120 -6.2067 44 1 3.5616 3.2256 -6.9154 45 1 3.6391 3.0323 -5.1480 46 1 1.1845 2.3582 -10.4724 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001325689395.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 21:12:06 Heat of formation + Delta-G solvation = -27.636403 kcal Electronic energy + Delta-G solvation = -27599.456118 eV Core-core repulsion = 23809.526710 eV Total energy + Delta-G solvation = -3789.929408 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -41.96889 -39.97341 -38.68309 -38.50652 -37.23614 -34.97111 -33.43164 -32.71945 -30.71611 -28.52222 -28.04237 -27.41832 -26.95755 -25.06546 -24.33628 -23.23637 -21.18636 -20.78581 -20.08706 -18.93481 -18.42701 -18.06995 -17.73010 -17.31043 -17.00961 -16.58384 -16.43812 -16.16101 -15.63984 -15.34214 -14.91145 -14.71122 -14.58893 -14.35128 -14.13346 -14.01248 -13.91629 -13.81142 -13.78305 -13.48983 -13.31640 -13.05080 -13.00624 -12.48552 -12.39923 -12.20725 -12.17858 -12.00933 -11.93537 -11.77145 -11.69697 -11.07660 -10.65849 -10.55128 -10.38511 -10.18720 -9.94999 -9.65317 -9.37114 -8.30334 -6.32565 -0.04434 0.36242 0.70299 1.04200 1.31653 1.36171 1.38512 1.49423 1.85359 2.14186 2.34060 2.51402 3.06151 3.33645 3.75584 4.01000 4.01692 4.08674 4.23803 4.29408 4.37678 4.39873 4.54135 4.60397 4.65530 4.69642 4.71087 4.78432 4.81016 4.83367 4.90179 4.99913 5.03495 5.12611 5.20000 5.25013 5.34996 5.36644 5.45621 5.48483 5.53781 5.67991 5.74457 5.90383 6.23820 6.30676 6.67071 6.73625 6.97930 7.32992 8.86439 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.017891 B = 0.002783 C = 0.002560 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1564.645983 B =10059.463272 C =10935.678426 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.102 3.898 3 N -0.573 5.573 4 C 0.184 3.816 5 C -0.214 4.214 6 C -0.127 4.127 7 C -0.152 4.152 8 C -0.209 4.209 9 S 0.115 5.885 10 C 0.512 3.488 11 O -0.535 6.535 12 C 0.495 3.505 13 O -0.529 6.529 14 N -0.685 5.685 15 C 0.156 3.844 16 C 0.027 3.973 17 C -0.143 4.143 18 C -0.149 4.149 19 C -0.513 4.513 20 H 0.036 0.964 21 C 0.020 3.980 22 N -0.945 5.945 23 Si 0.938 3.062 24 H -0.283 1.283 25 H -0.314 1.314 26 H -0.207 1.207 27 H 0.076 0.924 28 H 0.065 0.935 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.097 0.903 32 H 0.101 0.899 33 H 0.121 0.879 34 H 0.133 0.867 35 H 0.153 0.847 36 H 0.186 0.814 37 H 0.413 0.587 38 H 0.058 0.942 39 H 0.056 0.944 40 H 0.057 0.943 41 H 0.046 0.954 42 H 0.045 0.955 43 H 0.051 0.949 44 H 0.036 0.964 45 H 0.065 0.935 46 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.326 -0.187 29.140 30.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.020 4.020 3 N -0.306 5.306 4 C 0.061 3.939 5 C -0.332 4.332 6 C -0.159 4.159 7 C -0.182 4.182 8 C -0.344 4.344 9 S 0.379 5.621 10 C 0.294 3.706 11 O -0.412 6.412 12 C 0.275 3.725 13 O -0.407 6.407 14 N -0.338 5.338 15 C 0.033 3.967 16 C 0.026 3.974 17 C -0.200 4.200 18 C -0.206 4.206 19 C -0.551 4.551 20 H 0.054 0.946 21 C -0.178 4.178 22 N -0.584 5.584 23 Si 0.768 3.232 24 H -0.211 1.211 25 H -0.244 1.244 26 H -0.131 1.131 27 H 0.095 0.905 28 H 0.084 0.916 29 H 0.060 0.940 30 H 0.103 0.897 31 H 0.115 0.885 32 H 0.119 0.881 33 H 0.139 0.861 34 H 0.151 0.849 35 H 0.170 0.830 36 H 0.203 0.797 37 H 0.251 0.749 38 H 0.076 0.924 39 H 0.075 0.925 40 H 0.076 0.924 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.070 0.930 44 H 0.054 0.946 45 H 0.084 0.916 46 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 6.493 -1.621 29.713 30.458 hybrid contribution 1.192 1.860 -1.841 2.876 sum 7.685 0.239 27.872 28.913 Atomic orbital electron populations 1.22055 0.94657 1.03061 1.01522 1.22018 0.95645 0.80042 1.04271 1.48013 1.61982 1.15357 1.05218 1.20116 0.88723 1.00112 0.84960 1.24935 1.00048 1.00715 1.07524 1.20405 0.92257 1.01710 1.01480 1.20414 0.98793 0.97798 1.01157 1.25998 1.00904 1.01036 1.06511 1.84069 0.99544 1.25721 1.52807 1.20116 0.79386 0.85765 0.85328 1.90719 1.44374 1.19427 1.86700 1.20269 0.80918 0.85779 0.85493 1.90706 1.42154 1.20812 1.87003 1.45982 1.58553 1.23740 1.05519 1.21261 0.98730 0.95932 0.80776 1.18671 0.93075 0.93304 0.92381 1.22246 1.00123 0.97173 1.00487 1.22328 0.97208 1.00904 1.00155 1.20987 1.36892 1.06839 0.90365 0.94586 1.25784 0.97001 0.99887 0.95103 1.70081 1.43642 1.44435 1.00284 0.86426 0.78548 0.80263 0.77959 1.21059 1.24371 1.13088 0.90539 0.91634 0.94006 0.89661 0.88527 0.88104 0.86091 0.84878 0.82981 0.79665 0.74890 0.92410 0.92545 0.92387 0.93553 0.93539 0.93017 0.94608 0.91638 0.92654 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.88 9.63 71.98 0.69 -2.19 16 2 C 0.10 1.93 5.70 86.38 0.49 2.42 16 3 N -0.57 -12.10 2.47 -827.70 -2.04 -14.14 16 4 C 0.18 3.04 5.84 85.63 0.50 3.54 16 5 C -0.21 -3.80 6.09 24.59 0.15 -3.65 16 6 C -0.13 -2.48 10.05 21.22 0.21 -2.27 16 7 C -0.15 -2.51 10.18 21.22 0.22 -2.30 16 8 C -0.21 -2.96 11.23 66.72 0.75 -2.21 16 9 S 0.12 1.66 23.33 -56.49 -1.32 0.34 16 10 C 0.51 13.92 7.69 87.27 0.67 14.59 16 11 O -0.54 -15.93 16.10 -3.25 -0.05 -15.98 16 12 C 0.49 15.33 7.61 87.27 0.66 15.99 16 13 O -0.53 -17.61 11.39 -3.25 -0.04 -17.64 16 14 N -0.69 -22.07 5.00 -464.40 -2.32 -24.39 16 15 C 0.16 5.98 4.48 86.38 0.39 6.36 16 16 C 0.03 1.13 0.50 -52.93 -0.03 1.11 16 17 C -0.14 -5.55 7.48 71.98 0.54 -5.02 16 18 C -0.15 -5.74 7.50 71.98 0.54 -5.20 16 19 C -0.51 -27.74 8.62 25.60 0.22 -27.52 16 20 H 0.04 2.18 7.99 -2.91 -0.02 2.16 16 21 C 0.02 1.12 5.34 84.66 0.45 1.57 16 22 N -0.95 -58.16 13.96 21.45 0.30 -57.86 16 23 Si 0.94 43.01 22.79 68.60 1.56 44.58 16 24 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 25 H -0.31 -14.85 7.11 99.48 0.71 -14.14 16 26 H -0.21 -8.19 4.54 99.48 0.45 -7.74 16 27 H 0.08 1.27 8.14 -2.38 -0.02 1.25 16 28 H 0.06 0.96 8.14 -2.39 -0.02 0.95 16 29 H 0.04 1.03 6.42 -2.39 -0.02 1.02 16 30 H 0.09 2.04 5.84 -2.39 -0.01 2.03 16 31 H 0.10 1.33 8.03 -2.39 -0.02 1.31 16 32 H 0.10 1.78 7.47 -2.39 -0.02 1.76 16 33 H 0.12 1.29 8.07 -2.39 -0.02 1.27 16 34 H 0.13 2.87 8.06 -2.91 -0.02 2.85 16 35 H 0.15 2.02 8.06 -2.91 -0.02 1.99 16 36 H 0.19 1.66 8.06 -2.91 -0.02 1.64 16 37 H 0.41 12.43 5.76 -92.71 -0.53 11.89 16 38 H 0.06 2.32 8.14 -2.38 -0.02 2.30 16 39 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 40 H 0.06 1.87 7.15 -2.39 -0.02 1.85 16 41 H 0.05 1.90 4.32 -2.39 -0.01 1.89 16 42 H 0.05 1.79 8.11 -2.39 -0.02 1.77 16 43 H 0.05 2.00 8.14 -2.38 -0.02 1.98 16 44 H 0.04 1.44 2.24 -2.39 -0.01 1.43 16 45 H 0.06 2.08 6.86 -2.39 -0.02 2.06 16 46 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 Total: -1.00 -66.30 373.18 2.77 -63.53 By element: Atomic # 1 Polarization: 26.12 SS G_CDS: 0.22 Total: 26.33 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 6.46 Total: -4.77 kcal Atomic # 7 Polarization: -92.32 SS G_CDS: -4.06 Total: -96.39 kcal Atomic # 8 Polarization: -33.54 SS G_CDS: -0.09 Total: -33.63 kcal Atomic # 14 Polarization: 43.01 SS G_CDS: 1.56 Total: 44.58 kcal Atomic # 16 Polarization: 1.66 SS G_CDS: -1.32 Total: 0.34 kcal Total: -66.30 2.77 -63.53 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001325689395.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.893 kcal (2) G-P(sol) polarization free energy of solvation -66.299 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.769 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.530 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.636 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds