Wall clock time and date at job start Tue Mar 31 2020 20:33:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47666 * 119.99979 * 2 1 3 5 5 C 1.53000 * 109.47421 * 184.99928 * 4 2 1 6 6 N 1.46502 * 109.46831 * 179.97438 * 5 4 2 7 7 C 1.34781 * 119.99439 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.47359 * 119.99483 * 179.72816 * 7 6 5 10 10 C 1.39948 * 120.22292 * 90.00001 * 9 7 6 11 11 F 1.35100 * 120.07370 * 0.02562 * 10 9 7 12 12 C 1.38134 * 119.85058 * 179.76576 * 10 9 7 13 13 C 1.38433 * 120.30228 * 0.51080 * 12 10 9 14 14 C 1.38097 * 120.45184 * 359.74325 * 13 12 10 15 15 C 1.38778 * 120.13681 * 359.97438 * 14 13 12 16 16 N 1.39282 * 120.14821 * 179.97438 * 15 14 13 17 17 C 1.34780 * 120.00269 * 24.85379 * 16 15 14 18 18 N 1.34774 * 120.00590 * 185.62008 * 17 16 15 19 19 O 1.21579 * 119.99403 * 5.61401 * 17 16 15 20 20 N 1.46501 * 109.47230 * 240.00156 * 2 1 3 21 21 C 1.36935 * 120.00045 * 84.99706 * 20 2 1 22 22 H 1.07999 * 120.00091 * 359.97438 * 21 20 2 23 23 C 1.38811 * 120.00310 * 180.02562 * 21 20 2 24 24 N 1.31626 * 119.99502 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00566 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47124 * 59.99772 * 25 23 21 27 27 H 1.48495 * 109.47430 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47371 * 299.99997 * 25 23 21 29 29 H 1.08997 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46475 * 299.99839 * 1 2 3 31 31 H 1.08998 * 109.47300 * 59.99432 * 1 2 3 32 32 H 1.08999 * 109.46951 * 64.99744 * 4 2 1 33 33 H 1.08998 * 109.46687 * 305.00258 * 4 2 1 34 34 H 1.08999 * 109.47208 * 59.99973 * 5 4 2 35 35 H 1.08998 * 109.47022 * 300.00165 * 5 4 2 36 36 H 0.97000 * 120.00522 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.84839 * 180.27878 * 12 10 9 38 38 H 1.07999 * 119.77686 * 179.72261 * 13 12 10 39 39 H 1.08000 * 119.93108 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00201 * 204.84683 * 16 15 14 41 41 H 0.97001 * 119.99779 * 359.97438 * 18 17 16 42 42 H 0.96991 * 120.00402 * 179.97438 * 18 17 16 43 43 H 0.97005 * 119.99859 * 265.00023 * 20 2 1 44 44 H 0.96997 * 119.99772 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0532 -1.3034 2.5101 7 6 5.3742 -1.3394 2.7752 8 8 6.1606 -0.7988 2.0215 9 6 5.8648 -2.0284 3.9819 10 6 6.1972 -3.3869 3.9313 11 9 6.0697 -4.0725 2.7742 12 6 6.6610 -4.0240 5.0659 13 6 6.7886 -3.3273 6.2553 14 6 6.4592 -1.9878 6.3206 15 6 5.9970 -1.3280 5.1906 16 7 5.6642 0.0229 5.2564 17 6 6.2250 0.8102 6.1957 18 7 5.8203 2.0884 6.3330 19 8 7.0958 0.3671 6.9192 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3757 22 1 1.8918 1.0403 -2.4244 23 6 2.6113 -0.6618 -3.5093 24 7 2.9244 -1.9390 -3.4502 25 14 2.7890 0.2698 -5.1186 26 1 3.7442 1.3923 -4.9378 27 1 3.2981 -0.6486 -6.1686 28 1 1.4664 0.8065 -5.5285 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7715 1.2056 33 1 1.6055 -0.2617 2.1369 34 1 3.8533 0.4370 1.3572 35 1 3.9995 -1.0727 0.4258 36 1 3.4260 -1.7349 3.1111 37 1 6.9218 -5.0712 5.0257 38 1 7.1478 -3.8349 7.1383 39 1 6.5624 -1.4523 7.2529 40 1 5.0289 0.3972 4.6261 41 1 5.1257 2.4419 5.7555 42 1 6.2236 2.6548 7.0092 43 1 2.2490 -1.6318 -1.1526 44 1 3.2470 -2.3964 -4.2423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001328413846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:45 Heat of formation + Delta-G solvation = -73.548352 kcal Electronic energy + Delta-G solvation = -29024.268642 eV Core-core repulsion = 24698.427917 eV Total energy + Delta-G solvation = -4325.840724 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.08024 -41.26647 -39.70359 -38.33928 -36.61469 -35.21215 -34.43882 -34.13920 -32.33708 -31.35411 -29.71432 -29.20098 -28.08032 -24.65202 -23.82911 -23.68702 -22.43381 -21.39892 -20.83307 -19.84975 -19.00322 -18.75401 -17.88010 -17.19044 -17.01278 -16.64492 -16.20962 -15.65651 -15.56515 -15.42409 -15.27947 -15.16758 -14.81900 -14.58264 -13.95432 -13.86243 -13.52874 -13.42071 -12.95109 -12.90190 -12.53347 -12.39879 -12.09140 -12.02833 -11.58945 -11.14476 -11.00882 -10.95642 -10.76512 -10.67570 -10.60254 -10.34916 -10.19682 -10.10119 -9.84444 -9.64217 -9.11293 -9.00466 -8.88510 -8.49827 -6.96097 -5.74706 -3.04050 0.64847 0.86730 2.17444 2.45907 2.58496 3.10495 3.31583 3.45617 3.50211 3.51303 3.81172 3.99310 4.44036 4.60541 4.61670 4.74039 4.95037 5.01537 5.21439 5.32894 5.47891 5.53404 5.62024 5.65301 5.74198 5.82009 5.98510 6.00081 6.05676 6.11639 6.20196 6.27660 6.34734 6.36602 6.39327 6.55140 6.57931 6.65281 6.82379 7.02632 7.25716 7.44950 7.70829 7.98421 8.14285 8.43341 9.54607 10.10792 10.45055 11.47716 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.002707 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.605079 B =10342.179138 C =11209.929364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.119 3.881 6 N -0.719 5.719 7 C 0.556 3.444 8 O -0.514 6.514 9 C -0.197 4.197 10 C 0.157 3.843 11 F -0.124 7.124 12 C -0.177 4.177 13 C -0.054 4.054 14 C -0.147 4.147 15 C 0.231 3.769 16 N -0.677 5.677 17 C 0.711 3.289 18 N -0.857 5.857 19 O -0.570 6.570 20 N -0.724 5.724 21 C -0.241 4.241 22 H 0.069 0.931 23 C -0.011 4.011 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.286 1.286 27 H -0.291 1.291 28 H -0.287 1.287 29 H 0.046 0.954 30 H 0.035 0.965 31 H 0.054 0.946 32 H 0.067 0.933 33 H 0.062 0.938 34 H 0.066 0.934 35 H 0.088 0.912 36 H 0.398 0.602 37 H 0.142 0.858 38 H 0.140 0.860 39 H 0.159 0.841 40 H 0.411 0.589 41 H 0.402 0.598 42 H 0.421 0.579 43 H 0.384 0.616 44 H 0.256 0.744 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.165 1.556 25.672 25.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.065 3.935 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.003 4.003 6 N -0.371 5.371 7 C 0.339 3.661 8 O -0.389 6.389 9 C -0.204 4.204 10 C 0.136 3.864 11 F -0.102 7.102 12 C -0.196 4.196 13 C -0.073 4.073 14 C -0.168 4.168 15 C 0.132 3.868 16 N -0.323 5.323 17 C 0.410 3.590 18 N -0.425 5.425 19 O -0.447 6.447 20 N -0.366 5.366 21 C -0.372 4.372 22 H 0.087 0.913 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.737 3.263 26 H -0.212 1.212 27 H -0.217 1.217 28 H -0.214 1.214 29 H 0.065 0.935 30 H 0.054 0.946 31 H 0.073 0.927 32 H 0.086 0.914 33 H 0.081 0.919 34 H 0.084 0.916 35 H 0.106 0.894 36 H 0.232 0.768 37 H 0.160 0.840 38 H 0.158 0.842 39 H 0.177 0.823 40 H 0.247 0.753 41 H 0.230 0.770 42 H 0.254 0.746 43 H 0.218 0.782 44 H 0.066 0.934 Dipole moment (debyes) X Y Z Total from point charges 3.445 1.652 25.455 25.740 hybrid contribution -0.695 0.408 -1.384 1.601 sum 2.751 2.060 24.071 24.315 Atomic orbital electron populations 1.22431 0.99131 1.00873 0.99942 1.20138 0.91893 0.95499 0.86009 0.93338 1.22072 0.93594 1.02048 0.99408 1.21555 0.94666 0.97042 0.87040 1.46233 1.06641 1.56569 1.27610 1.17888 0.82940 0.80472 0.84768 1.90884 1.55280 1.44439 1.48288 1.19599 1.12659 0.94268 0.93918 1.17300 0.98660 0.87890 0.82516 1.91592 1.93126 1.78784 1.46684 1.21083 1.04972 1.01709 0.91885 1.21019 0.95657 0.93339 0.97252 1.21452 1.02162 0.94521 0.98617 1.17037 0.96130 0.82046 0.91546 1.42437 1.46989 1.07619 1.35276 1.15821 0.81118 0.81428 0.80649 1.42949 1.45271 1.11639 1.42610 1.90957 1.32955 1.73551 1.47220 1.42451 1.78105 1.10680 1.05339 1.19153 1.36889 0.93805 0.87357 0.91288 1.24733 1.02041 0.95945 0.98053 1.69645 1.50647 1.08645 1.29006 0.86297 0.77696 0.78674 0.83679 1.21250 1.21727 1.21358 0.93499 0.94624 0.92691 0.91440 0.91906 0.91598 0.89369 0.76785 0.83983 0.84179 0.82348 0.75257 0.76961 0.74601 0.78243 0.93445 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.74 9.49 37.16 0.35 -2.38 16 2 C 0.18 3.20 2.89 -67.93 -0.20 3.00 16 3 H 0.05 0.90 8.08 -51.93 -0.42 0.49 16 4 C -0.13 -1.88 4.87 -26.73 -0.13 -2.01 16 5 C 0.12 1.86 5.56 -4.04 -0.02 1.84 16 6 N -0.72 -9.28 5.55 -61.40 -0.34 -9.62 16 7 C 0.56 8.48 5.81 -12.55 -0.07 8.41 16 8 O -0.51 -10.29 17.11 5.27 0.09 -10.20 16 9 C -0.20 -2.54 5.65 -104.76 -0.59 -3.13 16 10 C 0.16 1.97 7.29 -38.98 -0.28 1.68 16 11 F -0.12 -1.82 16.83 2.25 0.04 -1.78 16 12 C -0.18 -1.66 10.00 -39.55 -0.40 -2.06 16 13 C -0.05 -0.45 10.02 -39.56 -0.40 -0.84 16 14 C -0.15 -1.48 8.70 -39.43 -0.34 -1.82 16 15 C 0.23 2.58 6.44 -83.49 -0.54 2.04 16 16 N -0.68 -6.41 5.16 -14.05 -0.07 -6.48 16 17 C 0.71 6.81 8.63 -86.92 -0.75 6.06 16 18 N -0.86 -4.46 8.88 27.63 0.25 -4.21 16 19 O -0.57 -7.31 14.33 5.30 0.08 -7.24 16 20 N -0.72 -17.42 4.57 -53.43 -0.24 -17.66 16 21 C -0.24 -6.57 9.93 -15.06 -0.15 -6.72 16 22 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 23 C -0.01 -0.33 5.50 -17.43 -0.10 -0.42 16 24 N -0.93 -28.26 13.06 55.49 0.72 -27.54 16 25 Si 0.91 22.56 29.55 -169.99 -5.02 17.54 16 26 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 27 H -0.29 -7.36 7.11 56.52 0.40 -6.95 16 28 H -0.29 -7.00 7.11 56.52 0.40 -6.59 16 29 H 0.05 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.03 0.48 8.14 -51.92 -0.42 0.06 16 31 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 32 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.09 1.80 7.75 -51.93 -0.40 1.39 16 36 H 0.40 3.92 8.46 -40.82 -0.35 3.58 16 37 H 0.14 1.02 8.06 -52.49 -0.42 0.59 16 38 H 0.14 0.74 8.06 -52.49 -0.42 0.31 16 39 H 0.16 1.63 5.77 -52.49 -0.30 1.33 16 40 H 0.41 3.29 7.91 -40.82 -0.32 2.96 16 41 H 0.40 1.10 8.85 -40.82 -0.36 0.74 16 42 H 0.42 1.62 8.93 -40.82 -0.36 1.25 16 43 H 0.38 9.94 7.80 -40.82 -0.32 9.62 16 44 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 381.80 15.07 5.75 5.75 Total: -1.00 -36.48 381.80 -8.13 -44.61 By element: Atomic # 1 Polarization: 18.95 SS G_CDS: -5.77 Total: 13.19 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: -3.61 Total: 3.64 kcal Atomic # 7 Polarization: -65.83 SS G_CDS: 0.31 Total: -65.52 kcal Atomic # 8 Polarization: -17.60 SS G_CDS: 0.17 Total: -17.43 kcal Atomic # 9 Polarization: -1.82 SS G_CDS: 0.04 Total: -1.78 kcal Atomic # 14 Polarization: 22.56 SS G_CDS: -5.02 Total: 17.54 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -36.48 -8.13 -44.61 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328413846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.936 kcal (2) G-P(sol) polarization free energy of solvation -36.480 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.132 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.613 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds