Wall clock time and date at job start Tue Mar 31 2020 20:33:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.08997 * 109.47287 * 2 1 4 4 C 1.53002 * 109.47666 * 119.99979 * 2 1 3 5 5 C 1.53000 * 109.47421 * 184.99928 * 4 2 1 6 6 N 1.46502 * 109.46831 * 179.97438 * 5 4 2 7 7 C 1.34781 * 119.99439 * 179.97438 * 6 5 4 8 8 O 1.21605 * 120.00169 * 0.02562 * 7 6 5 9 9 C 1.47359 * 119.99483 * 179.72816 * 7 6 5 10 10 C 1.39948 * 120.22292 * 90.00001 * 9 7 6 11 11 F 1.35100 * 120.07370 * 0.02562 * 10 9 7 12 12 C 1.38134 * 119.85058 * 179.76576 * 10 9 7 13 13 C 1.38433 * 120.30228 * 0.51080 * 12 10 9 14 14 C 1.38097 * 120.45184 * 359.74325 * 13 12 10 15 15 C 1.38778 * 120.13681 * 359.97438 * 14 13 12 16 16 N 1.39282 * 120.14821 * 179.97438 * 15 14 13 17 17 C 1.34780 * 120.00269 * 24.85379 * 16 15 14 18 18 N 1.34774 * 120.00590 * 185.62008 * 17 16 15 19 19 O 1.21579 * 119.99403 * 5.61401 * 17 16 15 20 20 N 1.46501 * 109.47230 * 240.00156 * 2 1 3 21 21 C 1.36935 * 120.00045 * 84.99706 * 20 2 1 22 22 H 1.07999 * 120.00091 * 359.97438 * 21 20 2 23 23 C 1.38811 * 120.00310 * 180.02562 * 21 20 2 24 24 N 1.31626 * 119.99502 * 359.97438 * 23 21 20 25 25 Si 1.86793 * 120.00566 * 179.97438 * 23 21 20 26 26 H 1.48506 * 109.47124 * 59.99772 * 25 23 21 27 27 H 1.48495 * 109.47430 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.47371 * 299.99997 * 25 23 21 29 29 H 1.08997 * 109.46855 * 180.02562 * 1 2 3 30 30 H 1.09010 * 109.46475 * 299.99839 * 1 2 3 31 31 H 1.08998 * 109.47300 * 59.99432 * 1 2 3 32 32 H 1.08999 * 109.46951 * 64.99744 * 4 2 1 33 33 H 1.08998 * 109.46687 * 305.00258 * 4 2 1 34 34 H 1.08999 * 109.47208 * 59.99973 * 5 4 2 35 35 H 1.08998 * 109.47022 * 300.00165 * 5 4 2 36 36 H 0.97000 * 120.00522 * 0.02562 * 6 5 4 37 37 H 1.08001 * 119.84839 * 180.27878 * 12 10 9 38 38 H 1.07999 * 119.77686 * 179.72261 * 13 12 10 39 39 H 1.08000 * 119.93108 * 180.02562 * 14 13 12 40 40 H 0.97003 * 120.00201 * 204.84683 * 16 15 14 41 41 H 0.97001 * 119.99779 * 359.97438 * 18 17 16 42 42 H 0.96991 * 120.00402 * 179.97438 * 18 17 16 43 43 H 0.97005 * 119.99859 * 265.00023 * 20 2 1 44 44 H 0.96997 * 119.99772 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3136 6 7 4.0532 -1.3034 2.5101 7 6 5.3742 -1.3394 2.7752 8 8 6.1606 -0.7988 2.0215 9 6 5.8648 -2.0284 3.9819 10 6 6.1972 -3.3869 3.9313 11 9 6.0697 -4.0725 2.7742 12 6 6.6610 -4.0240 5.0659 13 6 6.7886 -3.3273 6.2553 14 6 6.4592 -1.9878 6.3206 15 6 5.9970 -1.3280 5.1906 16 7 5.6642 0.0229 5.2564 17 6 6.2250 0.8102 6.1957 18 7 5.8203 2.0884 6.3330 19 8 7.0958 0.3671 6.9192 20 7 2.0183 -0.6906 -1.1962 21 6 2.1491 -0.0074 -2.3757 22 1 1.8918 1.0403 -2.4244 23 6 2.6113 -0.6618 -3.5093 24 7 2.9244 -1.9390 -3.4502 25 14 2.7890 0.2698 -5.1186 26 1 3.7442 1.3923 -4.9378 27 1 3.2981 -0.6486 -6.1686 28 1 1.4664 0.8065 -5.5285 29 1 -0.3633 -1.0277 0.0005 30 1 -0.3633 0.5139 0.8901 31 1 -0.3634 0.5139 -0.8899 32 1 1.7517 -1.7715 1.2056 33 1 1.6055 -0.2617 2.1369 34 1 3.8533 0.4370 1.3572 35 1 3.9995 -1.0727 0.4258 36 1 3.4260 -1.7349 3.1111 37 1 6.9218 -5.0712 5.0257 38 1 7.1478 -3.8349 7.1383 39 1 6.5624 -1.4523 7.2529 40 1 5.0289 0.3972 4.6261 41 1 5.1257 2.4419 5.7555 42 1 6.2236 2.6548 7.0092 43 1 2.2490 -1.6318 -1.1526 44 1 3.2470 -2.3964 -4.2423 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001328413846.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:33:44 Heat of formation + Delta-G solvation = -103.347592 kcal Electronic energy + Delta-G solvation = -29025.560834 eV Core-core repulsion = 24698.427917 eV Total energy + Delta-G solvation = -4327.132916 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.10280 -42.09255 -40.78919 -39.24324 -38.12605 -36.01512 -35.90924 -34.74863 -34.17226 -32.38033 -30.92353 -30.45344 -29.48155 -26.00876 -25.34219 -24.59966 -23.67311 -22.17255 -22.02060 -21.25772 -19.82035 -19.50542 -19.30168 -18.76712 -17.76843 -17.52728 -17.37073 -16.88313 -16.63584 -16.48589 -16.30396 -16.13068 -15.99357 -15.57378 -15.48850 -15.35144 -14.99408 -14.55887 -14.20570 -14.09466 -13.75556 -13.56672 -13.25896 -13.20639 -12.90221 -12.79327 -12.63120 -12.34063 -12.26398 -12.14249 -11.79052 -11.67550 -11.59960 -11.39484 -11.16766 -10.92316 -10.79891 -10.26244 -9.99078 -9.28273 -8.97674 -7.92288 -5.19199 -0.18436 0.05101 1.23677 1.45470 1.48512 1.50277 1.54026 1.85272 1.99181 2.50962 2.57212 3.09476 3.30037 3.41997 3.49062 3.83355 3.90307 3.92245 3.98147 4.19271 4.22559 4.27893 4.36366 4.66245 4.71340 4.76008 4.86579 4.89793 5.01442 5.03254 5.09228 5.18726 5.21906 5.31673 5.32382 5.40915 5.54342 5.60893 5.63050 5.79442 5.86856 6.30525 6.33321 6.66871 7.00392 7.35093 7.36330 8.15277 8.35155 9.31171 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013333 B = 0.002707 C = 0.002497 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2099.605079 B =10342.179138 C =11209.929364 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.164 3.836 3 H 0.047 0.953 4 C -0.116 4.116 5 C 0.130 3.870 6 N -0.698 5.698 7 C 0.559 3.441 8 O -0.571 6.571 9 C -0.214 4.214 10 C 0.131 3.869 11 F -0.145 7.145 12 C -0.166 4.166 13 C -0.036 4.036 14 C -0.149 4.149 15 C 0.227 3.773 16 N -0.675 5.675 17 C 0.706 3.294 18 N -0.835 5.835 19 O -0.605 6.605 20 N -0.737 5.737 21 C -0.233 4.233 22 H 0.076 0.924 23 C -0.079 4.079 24 N -0.971 5.971 25 Si 0.966 3.034 26 H -0.281 1.281 27 H -0.300 1.300 28 H -0.276 1.276 29 H 0.042 0.958 30 H 0.078 0.922 31 H 0.032 0.968 32 H 0.067 0.933 33 H 0.112 0.888 34 H 0.065 0.935 35 H 0.034 0.966 36 H 0.417 0.583 37 H 0.168 0.832 38 H 0.180 0.820 39 H 0.160 0.840 40 H 0.417 0.583 41 H 0.416 0.584 42 H 0.429 0.571 43 H 0.370 0.630 44 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.166 2.331 28.560 28.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.065 0.935 4 C -0.154 4.154 5 C 0.006 3.994 6 N -0.350 5.350 7 C 0.344 3.656 8 O -0.450 6.450 9 C -0.222 4.222 10 C 0.110 3.890 11 F -0.123 7.123 12 C -0.186 4.186 13 C -0.055 4.055 14 C -0.170 4.170 15 C 0.128 3.872 16 N -0.321 5.321 17 C 0.404 3.596 18 N -0.404 5.404 19 O -0.484 6.484 20 N -0.378 5.378 21 C -0.365 4.365 22 H 0.094 0.906 23 C -0.271 4.271 24 N -0.622 5.622 25 Si 0.796 3.204 26 H -0.208 1.208 27 H -0.226 1.226 28 H -0.202 1.202 29 H 0.061 0.939 30 H 0.097 0.903 31 H 0.051 0.949 32 H 0.086 0.914 33 H 0.131 0.869 34 H 0.084 0.916 35 H 0.052 0.948 36 H 0.254 0.746 37 H 0.186 0.814 38 H 0.197 0.803 39 H 0.178 0.822 40 H 0.254 0.746 41 H 0.247 0.753 42 H 0.264 0.736 43 H 0.202 0.798 44 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 2.353 2.495 28.399 28.605 hybrid contribution -0.407 0.229 -2.122 2.173 sum 1.945 2.724 26.277 26.489 Atomic orbital electron populations 1.22268 0.97153 1.00947 1.00966 1.20470 0.93118 0.95324 0.85478 0.93475 1.21938 0.92122 1.02086 0.99286 1.21250 0.95601 0.96548 0.85967 1.45995 1.06509 1.55727 1.26769 1.18294 0.82914 0.79469 0.84896 1.90848 1.56705 1.47042 1.50436 1.19406 1.14730 0.94649 0.93378 1.17701 1.00353 0.88025 0.82883 1.91537 1.93534 1.79178 1.48086 1.21387 1.03426 1.02865 0.90892 1.21460 0.93442 0.92553 0.98007 1.21625 1.01878 0.95335 0.98135 1.17157 0.96112 0.82695 0.91245 1.42412 1.47002 1.07234 1.35428 1.16010 0.80880 0.82375 0.80309 1.42793 1.44937 1.10139 1.42546 1.90927 1.34536 1.74496 1.48487 1.42688 1.78394 1.10239 1.06434 1.19571 1.34358 0.94121 0.88423 0.90619 1.25504 1.03388 0.96831 1.01412 1.69810 1.52945 1.10238 1.29250 0.85310 0.77951 0.77301 0.79840 1.20754 1.22619 1.20179 0.93895 0.90308 0.94924 0.91390 0.86936 0.91642 0.94782 0.74584 0.81444 0.80296 0.82242 0.74606 0.75296 0.73565 0.79789 0.94343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.77 9.49 71.98 0.68 -4.09 16 2 C 0.16 5.81 2.89 44.99 0.13 5.94 16 3 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 4 C -0.12 -3.07 4.87 30.59 0.15 -2.92 16 5 C 0.13 4.08 5.56 86.38 0.48 4.56 16 6 N -0.70 -17.87 5.55 -466.44 -2.59 -20.46 16 7 C 0.56 17.49 5.81 86.64 0.50 18.00 16 8 O -0.57 -24.03 17.11 -4.05 -0.07 -24.10 16 9 C -0.21 -5.51 5.65 -19.95 -0.11 -5.63 16 10 C 0.13 3.24 7.29 22.66 0.17 3.40 16 11 F -0.14 -4.39 16.83 44.97 0.76 -3.63 16 12 C -0.17 -2.76 10.00 22.29 0.22 -2.54 16 13 C -0.04 -0.49 10.02 22.28 0.22 -0.27 16 14 C -0.15 -2.71 8.70 22.37 0.19 -2.51 16 15 C 0.23 4.86 6.44 38.60 0.25 5.11 16 16 N -0.67 -12.09 5.16 -316.63 -1.64 -13.72 16 17 C 0.71 12.62 8.63 179.05 1.55 14.17 16 18 N -0.83 -7.16 8.88 -184.75 -1.64 -8.80 16 19 O -0.60 -14.88 14.33 -3.96 -0.06 -14.93 16 20 N -0.74 -36.03 4.57 -322.95 -1.48 -37.51 16 21 C -0.23 -12.85 9.93 84.03 0.83 -12.02 16 22 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.64 5.50 84.86 0.47 -4.18 16 24 N -0.97 -61.04 13.06 21.65 0.28 -60.76 16 25 Si 0.97 47.30 29.55 68.60 2.03 49.33 16 26 H -0.28 -13.37 7.11 99.48 0.71 -12.67 16 27 H -0.30 -14.94 7.11 99.48 0.71 -14.24 16 28 H -0.28 -12.84 7.11 99.48 0.71 -12.13 16 29 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 31 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 32 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 33 H 0.11 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.07 2.06 8.14 -2.39 -0.02 2.04 16 35 H 0.03 1.46 7.75 -2.39 -0.02 1.44 16 36 H 0.42 7.60 8.46 -92.71 -0.78 6.81 16 37 H 0.17 1.89 8.06 -2.91 -0.02 1.87 16 38 H 0.18 1.04 8.06 -2.91 -0.02 1.02 16 39 H 0.16 2.98 5.77 -2.91 -0.02 2.96 16 40 H 0.42 6.21 7.91 -92.71 -0.73 5.47 16 41 H 0.42 1.37 8.85 -92.71 -0.82 0.55 16 42 H 0.43 2.47 8.93 -92.71 -0.83 1.65 16 43 H 0.37 19.87 7.80 -92.70 -0.72 19.14 16 44 H 0.25 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -84.07 381.80 -1.45 -85.52 By element: Atomic # 1 Polarization: 34.83 SS G_CDS: -2.78 Total: 32.05 kcal Atomic # 6 Polarization: 11.28 SS G_CDS: 5.73 Total: 17.02 kcal Atomic # 7 Polarization: -134.19 SS G_CDS: -7.06 Total: -141.25 kcal Atomic # 8 Polarization: -38.91 SS G_CDS: -0.13 Total: -39.04 kcal Atomic # 9 Polarization: -4.39 SS G_CDS: 0.76 Total: -3.63 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 2.03 Total: 49.33 kcal Total: -84.07 -1.45 -85.52 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001328413846.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.828 kcal (2) G-P(sol) polarization free energy of solvation -84.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -101.901 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.447 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.348 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds