Wall clock time and date at job start Tue Mar 31 2020 20:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21533 * 120.00350 * 359.97438 * 6 5 4 8 8 C 1.48004 * 119.99867 * 180.02562 * 6 5 4 9 9 C 1.39904 * 120.94035 * 359.97438 * 8 6 5 10 10 C 1.38037 * 119.03324 * 179.97438 * 9 8 6 11 11 N 1.31856 * 120.98463 * 0.02562 * 10 9 8 12 12 C 1.31722 * 122.09454 * 359.97438 * 11 10 9 13 13 C 1.38534 * 120.84540 * 359.74191 * 12 11 10 14 14 F 1.35100 * 120.54073 * 180.28979 * 13 12 11 15 15 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 16 16 C 1.46902 * 110.99790 * 58.95192 * 15 2 1 17 17 C 1.46896 * 111.00342 * 295.00322 * 15 2 1 18 18 C 1.50695 * 109.47619 * 189.99958 * 17 15 2 19 19 O 1.21286 * 119.99843 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00467 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00385 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00257 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00040 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99888 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99883 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47359 * 89.99705 * 25 23 21 27 27 H 1.48503 * 109.46990 * 209.99604 * 25 23 21 28 28 H 1.48502 * 109.47378 * 329.99319 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 33 33 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 34 34 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.48028 * 359.95538 * 9 8 6 36 36 H 1.08007 * 119.50731 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.57599 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.46808 * 60.00632 * 16 15 2 39 39 H 1.09004 * 109.47176 * 180.02562 * 16 15 2 40 40 H 1.08994 * 109.47263 * 300.00333 * 16 15 2 41 41 H 1.09006 * 109.46837 * 310.00141 * 17 15 2 42 42 H 1.09003 * 109.47200 * 69.99229 * 17 15 2 43 43 H 0.97011 * 119.99567 * 359.97438 * 20 18 17 44 44 H 0.96997 * 119.99944 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5686 -1.8857 -3.1412 8 6 5.6480 -1.5358 -2.1313 9 6 6.3635 -1.0175 -1.0466 10 6 7.7384 -1.1393 -1.0312 11 7 8.3783 -1.7330 -2.0195 12 6 7.7466 -2.2355 -3.0604 13 6 6.3665 -2.1635 -3.1564 14 9 5.7244 -2.6861 -4.2241 15 7 2.0197 -0.6925 1.1993 16 6 1.5283 -2.0761 1.2458 17 6 1.6488 0.0390 2.4180 18 6 2.3680 -0.5572 3.6004 19 8 3.1157 -1.4992 3.4435 20 7 2.1797 -0.0444 4.8325 21 6 2.8336 -0.5872 5.9083 22 1 3.4994 -1.4260 5.7685 23 6 2.6398 -0.0581 7.1785 24 7 3.2662 -0.5787 8.2097 25 14 1.4877 1.3922 7.4202 26 1 0.1147 0.8944 7.6888 27 1 1.9527 2.2072 8.5713 28 1 1.4798 2.2282 6.1929 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6055 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1371 34 1 3.9824 -0.4621 -0.4320 35 1 5.8476 -0.5289 -0.2331 36 1 8.2984 -0.7416 -0.1977 37 1 8.3115 -2.7138 -3.8469 38 1 1.8763 -2.6150 0.3646 39 1 1.9054 -2.5656 2.1438 40 1 0.4386 -2.0742 1.2638 41 1 1.9297 1.0869 2.3125 42 1 0.5723 -0.0346 2.5725 43 1 1.5813 0.7088 4.9581 44 1 3.1306 -0.2097 9.0964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001329414470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:49 Heat of formation + Delta-G solvation = -56.598485 kcal Electronic energy + Delta-G solvation = -29095.489166 eV Core-core repulsion = 24770.383443 eV Total energy + Delta-G solvation = -4325.105723 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.17172 -40.73151 -39.65025 -38.91783 -37.51046 -34.62875 -33.98461 -33.03162 -31.74907 -31.23293 -31.00671 -28.21122 -26.97431 -25.56287 -24.85969 -23.87509 -23.44899 -20.98120 -20.22023 -19.39147 -18.46779 -18.29619 -17.61288 -17.49718 -16.72265 -16.20275 -15.99407 -15.88967 -15.46870 -15.05311 -15.00904 -14.76641 -14.65188 -14.26360 -14.07326 -13.74216 -13.70545 -13.39974 -13.25298 -13.10869 -12.95384 -12.57438 -12.43774 -12.26624 -12.04087 -11.76418 -11.42371 -11.37925 -11.10779 -10.92167 -10.65474 -10.59706 -10.28210 -10.04033 -9.86472 -9.60437 -9.35258 -9.20658 -8.68861 -8.25489 -8.08062 -6.37401 -3.89094 0.23091 0.54714 2.60479 2.81022 2.96275 3.00976 3.10050 3.37429 3.61424 3.65576 3.76508 4.04114 4.05105 4.22791 4.32766 4.41521 4.51361 4.68842 4.86183 4.99807 5.05848 5.13426 5.23882 5.28554 5.35111 5.37817 5.41660 5.44474 5.54746 5.61429 5.70219 5.73493 5.80636 5.87324 6.00556 6.15777 6.21955 6.43410 7.00755 7.14433 7.29812 7.39184 7.51435 7.94892 8.07759 8.53091 8.88698 9.35689 9.75833 10.75607 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002705 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.667488 B =10348.347078 C =11897.330163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C 0.063 3.937 3 H 0.090 0.910 4 C 0.131 3.869 5 N -0.702 5.702 6 C 0.555 3.445 7 O -0.528 6.528 8 C -0.125 4.125 9 C -0.105 4.105 10 C 0.086 3.914 11 N -0.442 5.442 12 C 0.068 3.932 13 C 0.103 3.897 14 F -0.108 7.108 15 N -0.512 5.512 16 C 0.014 3.986 17 C 0.041 3.959 18 C 0.451 3.549 19 O -0.560 6.560 20 N -0.590 5.590 21 C -0.305 4.305 22 H 0.120 0.880 23 C 0.042 3.958 24 N -0.880 5.880 25 Si 0.879 3.121 26 H -0.271 1.271 27 H -0.276 1.276 28 H -0.269 1.269 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.074 0.926 34 H 0.412 0.588 35 H 0.155 0.845 36 H 0.173 0.827 37 H 0.173 0.827 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.022 0.978 41 H 0.089 0.911 42 H 0.052 0.948 43 H 0.370 0.630 44 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.069 4.173 -19.734 20.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C -0.046 4.046 3 H 0.108 0.892 4 C 0.007 3.993 5 N -0.355 5.355 6 C 0.341 3.659 7 O -0.405 6.405 8 C -0.137 4.137 9 C -0.125 4.125 10 C -0.070 4.070 11 N -0.150 5.150 12 C -0.092 4.092 13 C 0.080 3.920 14 F -0.086 7.086 15 N -0.236 5.236 16 C -0.133 4.133 17 C -0.090 4.090 18 C 0.237 3.763 19 O -0.442 6.442 20 N -0.229 5.229 21 C -0.434 4.434 22 H 0.137 0.863 23 C -0.161 4.161 24 N -0.520 5.520 25 Si 0.706 3.294 26 H -0.197 1.197 27 H -0.202 1.202 28 H -0.195 1.195 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.082 0.918 32 H 0.090 0.910 33 H 0.092 0.908 34 H 0.250 0.750 35 H 0.172 0.828 36 H 0.190 0.810 37 H 0.191 0.809 38 H 0.080 0.920 39 H 0.115 0.885 40 H 0.041 0.959 41 H 0.107 0.893 42 H 0.070 0.930 43 H 0.202 0.798 44 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 1.552 3.110 -20.282 20.577 hybrid contribution -2.668 1.394 0.737 3.099 sum -1.116 4.503 -19.545 20.088 Atomic orbital electron populations 1.22402 0.96370 1.03005 1.02777 1.22063 0.93697 0.98665 0.90225 0.89170 1.21460 0.79427 1.01361 0.97064 1.45701 1.08022 1.58651 1.23119 1.17885 0.85977 0.78972 0.83088 1.90835 1.69230 1.47278 1.33109 1.20608 0.94964 1.02103 0.96049 1.22477 0.95757 0.97293 0.97002 1.22894 0.91572 0.95680 0.96878 1.67604 1.40314 1.06682 1.00418 1.22985 0.89241 0.99203 0.97736 1.18901 0.91650 0.96251 0.85209 1.91611 1.81711 1.83164 1.52087 1.61831 1.58979 1.02630 1.00112 1.22631 0.96950 0.89188 1.04573 1.21920 0.98257 0.98518 0.90347 1.19612 0.86560 0.86813 0.83308 1.90529 1.39829 1.29417 1.84386 1.42218 1.42427 1.31179 1.07102 1.19412 1.24123 1.15898 0.83962 0.86258 1.25043 0.97710 0.98097 0.95268 1.69617 1.41718 1.41168 0.99489 0.86683 0.81488 0.82621 0.78637 1.19687 1.20159 1.19499 0.91644 0.91669 0.91767 0.90960 0.90818 0.75016 0.82775 0.80967 0.80948 0.91952 0.88469 0.95949 0.89297 0.92996 0.79759 0.91563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.59 8.50 37.16 0.32 -1.27 16 2 C 0.06 0.61 2.50 -67.71 -0.17 0.44 16 3 H 0.09 0.78 8.03 -51.93 -0.42 0.36 16 4 C 0.13 1.34 4.69 -4.04 -0.02 1.32 16 5 N -0.70 -7.72 5.35 -61.20 -0.33 -8.05 16 6 C 0.56 7.21 7.79 -12.26 -0.10 7.12 16 7 O -0.53 -8.54 15.48 5.34 0.08 -8.46 16 8 C -0.13 -1.43 5.91 -104.59 -0.62 -2.05 16 9 C -0.10 -0.97 9.61 -39.03 -0.38 -1.34 16 10 C 0.09 0.77 11.17 -17.62 -0.20 0.57 16 11 N -0.44 -4.50 10.33 -13.24 -0.14 -4.64 16 12 C 0.07 0.65 11.17 -17.49 -0.20 0.45 16 13 C 0.10 1.17 7.33 -38.80 -0.28 0.89 16 14 F -0.11 -1.41 15.72 2.25 0.04 -1.37 16 15 N -0.51 -6.67 3.93 -236.33 -0.93 -7.60 16 16 C 0.01 0.20 8.46 60.07 0.51 0.71 16 17 C 0.04 0.59 4.89 -4.98 -0.02 0.56 16 18 C 0.45 9.27 7.47 -10.99 -0.08 9.19 16 19 O -0.56 -13.59 13.91 5.55 0.08 -13.51 16 20 N -0.59 -13.09 5.09 -10.97 -0.06 -13.15 16 21 C -0.31 -8.22 10.16 -14.93 -0.15 -8.37 16 22 H 0.12 3.69 7.39 -52.48 -0.39 3.31 16 23 C 0.04 1.11 5.50 -17.46 -0.10 1.01 16 24 N -0.88 -24.96 13.96 55.50 0.77 -24.19 16 25 Si 0.88 18.57 27.74 -169.99 -4.71 13.85 16 26 H -0.27 -5.65 7.11 56.52 0.40 -5.25 16 27 H -0.28 -5.90 7.11 56.52 0.40 -5.50 16 28 H -0.27 -5.12 6.52 56.52 0.37 -4.75 16 29 H 0.06 0.56 6.75 -51.93 -0.35 0.21 16 30 H 0.06 0.59 6.39 -51.93 -0.33 0.26 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.07 0.82 6.70 -51.93 -0.35 0.48 16 33 H 0.07 0.71 8.14 -51.93 -0.42 0.28 16 34 H 0.41 4.20 6.28 -40.82 -0.26 3.94 16 35 H 0.15 1.18 6.54 -52.48 -0.34 0.83 16 36 H 0.17 1.10 8.06 -52.48 -0.42 0.68 16 37 H 0.17 1.16 8.06 -52.49 -0.42 0.73 16 38 H 0.06 0.84 6.44 -51.93 -0.33 0.50 16 39 H 0.10 1.74 5.82 -51.93 -0.30 1.44 16 40 H 0.02 0.28 6.28 -51.93 -0.33 -0.05 16 41 H 0.09 1.09 8.00 -51.93 -0.42 0.67 16 42 H 0.05 0.67 6.94 -51.93 -0.36 0.31 16 43 H 0.37 7.20 5.76 -40.82 -0.24 6.96 16 44 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 365.41 15.07 5.51 5.51 Total: -1.00 -33.64 365.41 -6.44 -40.08 By element: Atomic # 1 Polarization: 17.57 SS G_CDS: -5.27 Total: 12.30 kcal Atomic # 6 Polarization: 10.71 SS G_CDS: -1.48 Total: 9.23 kcal Atomic # 7 Polarization: -56.94 SS G_CDS: -0.67 Total: -57.62 kcal Atomic # 8 Polarization: -22.14 SS G_CDS: 0.16 Total: -21.98 kcal Atomic # 9 Polarization: -1.41 SS G_CDS: 0.04 Total: -1.37 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -4.71 Total: 13.85 kcal Total LS contribution 5.51 Total: 5.51 kcal Total: -33.64 -6.44 -40.08 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329414470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.523 kcal (2) G-P(sol) polarization free energy of solvation -33.636 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.159 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.439 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.075 kcal (6) G-S(sol) free energy of system = (1) + (5) -56.598 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds