Wall clock time and date at job start Tue Mar 31 2020 20:53:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 109.47533 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00501 * 2 1 3 5 5 N 1.46504 * 109.47051 * 185.00029 * 4 2 1 6 6 C 1.34774 * 119.99669 * 179.97438 * 5 4 2 7 7 O 1.21533 * 120.00350 * 359.97438 * 6 5 4 8 8 C 1.48004 * 119.99867 * 180.02562 * 6 5 4 9 9 C 1.39904 * 120.94035 * 359.97438 * 8 6 5 10 10 C 1.38037 * 119.03324 * 179.97438 * 9 8 6 11 11 N 1.31856 * 120.98463 * 0.02562 * 10 9 8 12 12 C 1.31722 * 122.09454 * 359.97438 * 11 10 9 13 13 C 1.38534 * 120.84540 * 359.74191 * 12 11 10 14 14 F 1.35100 * 120.54073 * 180.28979 * 13 12 11 15 15 N 1.46894 * 109.47515 * 120.00133 * 2 1 3 16 16 C 1.46902 * 110.99790 * 58.95192 * 15 2 1 17 17 C 1.46896 * 111.00342 * 295.00322 * 15 2 1 18 18 C 1.50695 * 109.47619 * 189.99958 * 17 15 2 19 19 O 1.21286 * 119.99843 * 359.97438 * 18 17 15 20 20 N 1.34776 * 120.00467 * 180.02562 * 18 17 15 21 21 C 1.37089 * 120.00385 * 179.97438 * 20 18 17 22 22 H 1.08003 * 120.00257 * 359.97438 * 21 20 18 23 23 C 1.38957 * 120.00040 * 179.97438 * 21 20 18 24 24 N 1.31412 * 119.99888 * 179.97438 * 23 21 20 25 25 Si 1.86794 * 119.99883 * 0.02562 * 23 21 20 26 26 H 1.48496 * 109.47359 * 89.99705 * 25 23 21 27 27 H 1.48503 * 109.46990 * 209.99604 * 25 23 21 28 28 H 1.48502 * 109.47378 * 329.99319 * 25 23 21 29 29 H 1.09002 * 109.47153 * 299.99629 * 1 2 3 30 30 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 31 31 H 1.09004 * 109.47261 * 59.99801 * 1 2 3 32 32 H 1.08996 * 109.46945 * 304.99450 * 4 2 1 33 33 H 1.09000 * 109.47314 * 64.99572 * 4 2 1 34 34 H 0.96996 * 119.99902 * 359.97438 * 5 4 2 35 35 H 1.08004 * 120.48028 * 359.95538 * 9 8 6 36 36 H 1.08007 * 119.50731 * 179.97438 * 10 9 8 37 37 H 1.08000 * 119.57599 * 180.02562 * 12 11 10 38 38 H 1.09003 * 109.46808 * 60.00632 * 16 15 2 39 39 H 1.09004 * 109.47176 * 180.02562 * 16 15 2 40 40 H 1.08994 * 109.47263 * 300.00333 * 16 15 2 41 41 H 1.09006 * 109.46837 * 310.00141 * 17 15 2 42 42 H 1.09003 * 109.47200 * 69.99229 * 17 15 2 43 43 H 0.97011 * 119.99567 * 359.97438 * 20 18 17 44 44 H 0.96997 * 119.99944 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 3.5001 -0.8263 -1.1907 6 6 4.1730 -1.4290 -2.1908 7 8 3.5686 -1.8857 -3.1412 8 6 5.6480 -1.5358 -2.1313 9 6 6.3635 -1.0175 -1.0466 10 6 7.7384 -1.1393 -1.0312 11 7 8.3783 -1.7330 -2.0195 12 6 7.7466 -2.2355 -3.0604 13 6 6.3665 -2.1635 -3.1564 14 9 5.7244 -2.6861 -4.2241 15 7 2.0197 -0.6925 1.1993 16 6 1.5283 -2.0761 1.2458 17 6 1.6488 0.0390 2.4180 18 6 2.3680 -0.5572 3.6004 19 8 3.1157 -1.4992 3.4435 20 7 2.1797 -0.0444 4.8325 21 6 2.8336 -0.5872 5.9083 22 1 3.4994 -1.4260 5.7685 23 6 2.6398 -0.0581 7.1785 24 7 3.2662 -0.5787 8.2097 25 14 1.4877 1.3922 7.4202 26 1 0.1147 0.8944 7.6888 27 1 1.9527 2.2072 8.5713 28 1 1.4798 2.2282 6.1929 29 1 -0.3633 0.5138 0.8900 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3634 0.5139 -0.8900 32 1 1.6055 -1.7197 -1.2953 33 1 1.7516 -0.1582 -2.1371 34 1 3.9824 -0.4621 -0.4320 35 1 5.8476 -0.5289 -0.2331 36 1 8.2984 -0.7416 -0.1977 37 1 8.3115 -2.7138 -3.8469 38 1 1.8763 -2.6150 0.3646 39 1 1.9054 -2.5656 2.1438 40 1 0.4386 -2.0742 1.2638 41 1 1.9297 1.0869 2.3125 42 1 0.5723 -0.0346 2.5725 43 1 1.5813 0.7088 4.9581 44 1 3.1306 -0.2097 9.0964 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001329414470.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:53:49 Heat of formation + Delta-G solvation = -83.708997 kcal Electronic energy + Delta-G solvation = -29096.664766 eV Core-core repulsion = 24770.383443 eV Total energy + Delta-G solvation = -4326.281323 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -50.08430 -41.59767 -40.73510 -40.15020 -38.79147 -36.01445 -35.48184 -33.89397 -33.69254 -32.04121 -31.89241 -29.47010 -27.82721 -26.98549 -25.80093 -25.11503 -24.35710 -21.90209 -21.37370 -20.97626 -20.04267 -19.32019 -18.47382 -18.35851 -17.92321 -17.21665 -16.92942 -16.89886 -16.81136 -16.47557 -16.21241 -15.84842 -15.59156 -15.40907 -15.04254 -14.89143 -14.76281 -14.55072 -14.47740 -14.29998 -14.14342 -13.89870 -13.55528 -13.22159 -13.10262 -12.90372 -12.80762 -12.40912 -12.38174 -12.25305 -11.95275 -11.76775 -11.56537 -11.41236 -11.13415 -10.71457 -10.31420 -10.18801 -10.17665 -10.08897 -9.19434 -8.37158 -5.97103 -0.61740 -0.20735 1.32486 1.38135 1.46863 1.67082 1.92735 2.03402 2.26162 2.56787 2.62212 2.81995 3.20007 3.26897 3.35533 3.42246 3.55616 3.65187 3.72046 4.03186 4.19879 4.27208 4.32629 4.36386 4.46159 4.49675 4.57434 4.61888 4.63624 4.67633 4.73531 4.76614 4.87319 5.02658 5.20170 5.28433 5.36784 5.42391 5.57415 5.91805 6.03111 6.17180 6.37492 6.63733 6.64774 6.94713 7.00606 7.46611 8.04497 8.80528 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.013651 B = 0.002705 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2050.667488 B =10348.347078 C =11897.330163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C 0.072 3.928 3 H 0.114 0.886 4 C 0.129 3.871 5 N -0.693 5.693 6 C 0.552 3.448 7 O -0.567 6.567 8 C -0.140 4.140 9 C -0.100 4.100 10 C 0.089 3.911 11 N -0.455 5.455 12 C 0.075 3.925 13 C 0.081 3.919 14 F -0.123 7.123 15 N -0.524 5.524 16 C 0.024 3.976 17 C 0.053 3.947 18 C 0.453 3.547 19 O -0.603 6.603 20 N -0.594 5.594 21 C -0.322 4.322 22 H 0.056 0.944 23 C -0.017 4.017 24 N -0.938 5.938 25 Si 0.962 3.038 26 H -0.261 1.261 27 H -0.279 1.279 28 H -0.226 1.226 29 H 0.072 0.928 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.058 0.942 33 H 0.086 0.914 34 H 0.417 0.583 35 H 0.171 0.829 36 H 0.200 0.800 37 H 0.198 0.802 38 H 0.063 0.937 39 H 0.053 0.947 40 H 0.039 0.961 41 H 0.126 0.874 42 H 0.079 0.921 43 H 0.388 0.612 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.589 7.456 -20.707 22.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.243 4.243 2 C -0.037 4.037 3 H 0.132 0.868 4 C 0.006 3.994 5 N -0.344 5.344 6 C 0.338 3.662 7 O -0.447 6.447 8 C -0.152 4.152 9 C -0.120 4.120 10 C -0.067 4.067 11 N -0.164 5.164 12 C -0.083 4.083 13 C 0.058 3.942 14 F -0.101 7.101 15 N -0.248 5.248 16 C -0.124 4.124 17 C -0.077 4.077 18 C 0.241 3.759 19 O -0.486 6.486 20 N -0.237 5.237 21 C -0.451 4.451 22 H 0.074 0.926 23 C -0.215 4.215 24 N -0.579 5.579 25 Si 0.783 3.217 26 H -0.186 1.186 27 H -0.205 1.205 28 H -0.150 1.150 29 H 0.091 0.909 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.077 0.923 33 H 0.104 0.896 34 H 0.256 0.744 35 H 0.188 0.812 36 H 0.217 0.783 37 H 0.215 0.785 38 H 0.081 0.919 39 H 0.071 0.929 40 H 0.057 0.943 41 H 0.144 0.856 42 H 0.097 0.903 43 H 0.224 0.776 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -0.115 6.411 -21.278 22.223 hybrid contribution -2.052 0.250 0.982 2.288 sum -2.166 6.661 -20.295 21.470 Atomic orbital electron populations 1.22382 0.94886 1.02887 1.04101 1.22113 0.94769 0.99002 0.87775 0.86807 1.21552 0.78786 1.01003 0.98078 1.45702 1.08482 1.57652 1.22580 1.18150 0.86650 0.78522 0.82845 1.90807 1.70107 1.49147 1.34657 1.20670 0.94356 1.03081 0.97044 1.22639 0.95955 0.96821 0.96586 1.23382 0.91627 0.94585 0.97093 1.67697 1.40594 1.07205 1.00883 1.23335 0.88580 0.98372 0.98054 1.19169 0.92461 0.97324 0.85210 1.91565 1.82118 1.83601 1.52839 1.61738 1.59936 1.02188 1.00961 1.22407 0.97776 0.89911 1.02346 1.21856 0.98648 0.99590 0.87654 1.20907 0.85198 0.85461 0.84339 1.90529 1.41536 1.31263 1.85291 1.42051 1.43006 1.32093 1.06507 1.18972 1.24540 1.15252 0.86348 0.92595 1.26087 0.99583 1.01776 0.94076 1.69808 1.44154 1.43618 1.00312 0.85399 0.78321 0.77969 0.80046 1.18600 1.20467 1.14951 0.90899 0.92543 0.89872 0.92339 0.89635 0.74428 0.81188 0.78333 0.78514 0.91866 0.92854 0.94255 0.85619 0.90339 0.77623 0.91337 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.34 8.50 71.98 0.61 -1.73 16 2 C 0.07 1.12 2.50 44.92 0.11 1.23 16 3 H 0.11 1.34 8.03 -2.39 -0.02 1.32 16 4 C 0.13 2.39 4.69 86.38 0.40 2.79 16 5 N -0.69 -14.32 5.35 -465.81 -2.49 -16.81 16 6 C 0.55 14.27 7.79 86.83 0.68 14.95 16 7 O -0.57 -18.70 15.48 -3.82 -0.06 -18.76 16 8 C -0.14 -3.17 5.91 -19.85 -0.12 -3.28 16 9 C -0.10 -1.72 9.61 22.63 0.22 -1.50 16 10 C 0.09 1.44 11.17 84.64 0.95 2.39 16 11 N -0.46 -8.68 10.33 -195.82 -2.02 -10.70 16 12 C 0.08 1.38 11.17 84.78 0.95 2.33 16 13 C 0.08 1.86 7.33 22.78 0.17 2.03 16 14 F -0.12 -3.32 15.72 44.97 0.71 -2.61 16 15 N -0.52 -12.30 3.93 -901.63 -3.54 -15.84 16 16 C 0.02 0.65 8.46 127.69 1.08 1.73 16 17 C 0.05 1.33 4.89 85.56 0.42 1.75 16 18 C 0.45 18.18 7.47 87.66 0.66 18.83 16 19 O -0.60 -30.08 13.91 -3.05 -0.04 -30.12 16 20 N -0.59 -25.74 5.09 -306.99 -1.56 -27.30 16 21 C -0.32 -17.89 10.16 84.04 0.85 -17.04 16 22 H 0.06 3.74 7.39 -2.91 -0.02 3.72 16 23 C -0.02 -0.91 5.50 84.93 0.47 -0.44 16 24 N -0.94 -55.20 13.96 21.67 0.30 -54.90 16 25 Si 0.96 36.96 27.74 68.60 1.90 38.86 16 26 H -0.26 -9.61 7.11 99.48 0.71 -8.91 16 27 H -0.28 -10.84 7.11 99.48 0.71 -10.13 16 28 H -0.23 -7.06 6.52 99.48 0.65 -6.41 16 29 H 0.07 0.86 6.75 -2.39 -0.02 0.85 16 30 H 0.06 0.84 6.39 -2.39 -0.02 0.82 16 31 H 0.08 0.79 8.14 -2.38 -0.02 0.77 16 32 H 0.06 1.27 6.70 -2.39 -0.02 1.25 16 33 H 0.09 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.42 7.73 6.28 -92.71 -0.58 7.15 16 35 H 0.17 2.30 6.54 -2.91 -0.02 2.28 16 36 H 0.20 2.05 8.06 -2.91 -0.02 2.03 16 37 H 0.20 2.42 8.06 -2.91 -0.02 2.40 16 38 H 0.06 1.69 6.44 -2.39 -0.02 1.67 16 39 H 0.05 1.95 5.82 -2.38 -0.01 1.94 16 40 H 0.04 0.92 6.28 -2.39 -0.02 0.91 16 41 H 0.13 2.33 8.00 -2.38 -0.02 2.31 16 42 H 0.08 1.63 6.94 -2.39 -0.02 1.62 16 43 H 0.39 13.76 5.76 -92.70 -0.53 13.22 16 44 H 0.28 14.98 8.31 -92.71 -0.77 14.21 16 Total: -1.00 -80.26 365.41 0.53 -79.73 By element: Atomic # 1 Polarization: 34.52 SS G_CDS: -0.10 Total: 34.43 kcal Atomic # 6 Polarization: 16.59 SS G_CDS: 7.44 Total: 24.03 kcal Atomic # 7 Polarization: -116.24 SS G_CDS: -9.32 Total: -125.55 kcal Atomic # 8 Polarization: -48.78 SS G_CDS: -0.10 Total: -48.88 kcal Atomic # 9 Polarization: -3.32 SS G_CDS: 0.71 Total: -2.61 kcal Atomic # 14 Polarization: 36.96 SS G_CDS: 1.90 Total: 38.86 kcal Total: -80.26 0.53 -79.73 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001329414470.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -3.977 kcal (2) G-P(sol) polarization free energy of solvation -80.265 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.732 kcal (6) G-S(sol) free energy of system = (1) + (5) -83.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds