Wall clock time and date at job start Tue Mar 31 2020 20:39:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 N 1.46497 * 109.47188 * 239.99601 * 2 1 3 5 5 C 1.36945 * 119.99649 * 85.00202 * 4 2 1 6 6 H 1.07997 * 120.00244 * 359.97438 * 5 4 2 7 7 C 1.38812 * 119.99544 * 180.02562 * 5 4 2 8 8 N 1.31613 * 120.00617 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99539 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47491 * 90.00011 * 9 7 5 11 11 H 1.48503 * 109.46935 * 209.99973 * 9 7 5 12 12 H 1.48500 * 109.47157 * 329.99526 * 9 7 5 13 13 C 1.53006 * 109.47127 * 120.00159 * 2 1 3 14 14 H 1.09002 * 109.51226 * 175.10201 * 13 2 1 15 15 C 1.53299 * 109.50891 * 295.24873 * 13 2 1 16 16 N 1.47154 * 108.38121 * 172.22524 * 15 13 2 17 17 C 1.34779 * 120.98064 * 129.44618 * 16 15 13 18 18 O 1.21275 * 119.99655 * 0.02562 * 17 16 15 19 19 C 1.50700 * 119.99950 * 180.02562 * 17 16 15 20 20 C 1.52998 * 109.46734 * 180.02562 * 19 17 16 21 21 C 1.50700 * 109.46734 * 180.02562 * 20 19 17 22 22 C 1.38430 * 122.54003 * 269.73353 * 21 20 19 23 23 C 1.33383 * 114.92234 * 179.76480 * 22 21 20 24 24 S 1.75880 * 109.59376 * 0.47251 * 23 22 21 25 25 C 1.33390 * 122.54331 * 90.01999 * 21 20 19 26 26 C 1.47154 * 118.03811 * 309.46807 * 16 15 13 27 27 C 1.53298 * 108.38525 * 50.53434 * 26 16 15 28 28 O 1.42952 * 109.51238 * 54.99722 * 13 2 1 29 29 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 30 30 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 31 31 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 32 32 H 0.96996 * 120.00792 * 265.00493 * 4 2 1 33 33 H 0.97006 * 120.00607 * 180.02562 * 8 7 5 34 34 H 1.08992 * 109.68658 * 291.95295 * 15 13 2 35 35 H 1.09001 * 109.68134 * 52.50808 * 15 13 2 36 36 H 1.09005 * 109.46676 * 299.99690 * 19 17 16 37 37 H 1.08993 * 109.47112 * 59.99375 * 19 17 16 38 38 H 1.08996 * 109.46798 * 299.99124 * 20 19 17 39 39 H 1.08993 * 109.47658 * 60.00016 * 20 19 17 40 40 H 1.08004 * 122.53268 * 359.97438 * 22 21 20 41 41 H 1.08004 * 125.20285 * 180.20677 * 23 22 21 42 42 H 1.08000 * 125.19963 * 359.97438 * 25 21 20 43 43 H 1.09004 * 109.68217 * 290.81433 * 26 16 15 44 44 H 1.08995 * 109.71480 * 170.27787 * 26 16 15 45 45 H 1.08994 * 109.51480 * 187.77646 * 27 26 16 46 46 H 1.09001 * 109.55281 * 67.64228 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 7 2.0183 -0.6907 -1.1961 5 6 2.1491 -0.0075 -2.3757 6 1 1.8919 1.0403 -2.4244 7 6 2.6113 -0.6621 -3.5092 8 7 2.9244 -1.9391 -3.4501 9 14 2.7905 0.2700 -5.1182 10 1 4.1531 0.8541 -5.2029 11 1 2.5794 -0.6610 -6.2557 12 1 1.7812 1.3578 -5.1751 13 6 2.0400 -0.7213 1.2493 14 1 3.1265 -0.7983 1.2072 15 6 1.6295 0.0664 2.4987 16 7 1.9648 -0.7373 3.6849 17 6 2.6681 -0.2079 4.7055 18 8 3.0342 0.9472 4.6547 19 6 2.9997 -1.0513 5.9095 20 6 3.7974 -0.2162 6.9131 21 6 4.1295 -1.0598 8.1168 22 6 3.3020 -1.1358 9.2240 23 6 3.7412 -1.9314 10.2004 24 16 5.2876 -2.6314 9.7401 25 6 5.2457 -1.7855 8.1986 26 6 1.5098 -2.1362 3.7237 27 6 1.9261 -2.8166 2.4146 28 8 1.4705 -2.0311 1.3104 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 0.5139 0.8900 31 1 -0.3634 -1.0277 0.0005 32 1 2.2490 -1.6318 -1.1526 33 1 3.2477 -2.3965 -4.2421 34 1 2.1708 1.0119 2.5309 35 1 0.5567 0.2576 2.4761 36 1 2.0772 -1.3964 6.3765 37 1 3.5931 -1.9110 5.5986 38 1 4.7198 0.1291 6.4463 39 1 3.2035 0.6433 7.2239 40 1 2.3697 -0.5947 9.2906 41 1 3.2280 -2.1141 11.1329 42 1 6.0071 -1.8448 7.4349 43 1 0.4248 -2.1667 3.8244 44 1 1.9712 -2.6496 4.5672 45 1 1.4808 -3.8101 2.3630 46 1 3.0121 -2.9018 2.3771 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001330399597.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:57 Heat of formation + Delta-G solvation = -33.138164 kcal Electronic energy + Delta-G solvation = -26840.602500 eV Core-core repulsion = 23050.434517 eV Total energy + Delta-G solvation = -3790.167982 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -40.47492 -38.92159 -38.19486 -35.52625 -34.53889 -33.25128 -32.41986 -30.37940 -29.54724 -28.46240 -27.38563 -25.62773 -24.50865 -23.45465 -22.95587 -21.93059 -19.67285 -19.14794 -19.04745 -18.04137 -17.39285 -17.03978 -16.39177 -15.99049 -15.81419 -15.44511 -15.10093 -14.61625 -14.43622 -14.18574 -13.97901 -13.50422 -13.35501 -13.30139 -13.17906 -12.86552 -12.59724 -12.56828 -12.39566 -12.23741 -12.04840 -11.84399 -11.36968 -11.27492 -11.12707 -11.04856 -10.84438 -10.71390 -10.53404 -10.28084 -10.06224 -9.82879 -9.78461 -9.63344 -9.15695 -8.88596 -8.72125 -8.49347 -6.92260 -5.72532 -3.01223 0.65472 1.31957 1.64284 2.30669 2.51295 2.83601 3.45816 3.50985 3.52577 3.96893 4.24674 4.54464 4.58954 4.71480 4.75788 4.77307 4.82572 4.90592 5.07498 5.11858 5.17698 5.21593 5.27440 5.33586 5.45130 5.48820 5.60537 5.67626 5.70455 5.71592 5.80955 5.82117 5.99288 6.00043 6.09311 6.17358 6.21612 6.36702 6.47265 6.66218 6.83300 7.16696 7.26377 7.47588 7.72935 8.04612 8.45668 9.57548 10.15220 10.51833 11.49892 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.023816 B = 0.001975 C = 0.001950 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1175.410535 B =14174.922079 C =14352.593182 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.185 3.815 3 H 0.059 0.941 4 N -0.719 5.719 5 C -0.238 4.238 6 H 0.070 0.930 7 C -0.014 4.014 8 N -0.931 5.931 9 Si 0.906 3.094 10 H -0.290 1.290 11 H -0.292 1.292 12 H -0.282 1.282 13 C 0.076 3.924 14 H 0.063 0.937 15 C 0.082 3.918 16 N -0.614 5.614 17 C 0.514 3.486 18 O -0.541 6.541 19 C -0.132 4.132 20 C -0.045 4.045 21 C -0.100 4.100 22 C -0.129 4.129 23 C -0.212 4.212 24 S 0.088 5.912 25 C -0.209 4.209 26 C 0.072 3.928 27 C 0.045 3.955 28 O -0.358 6.358 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.056 0.944 32 H 0.389 0.611 33 H 0.254 0.746 34 H 0.099 0.901 35 H 0.080 0.920 36 H 0.094 0.906 37 H 0.094 0.906 38 H 0.081 0.919 39 H 0.082 0.918 40 H 0.141 0.859 41 H 0.163 0.837 42 H 0.165 0.835 43 H 0.078 0.922 44 H 0.090 0.910 45 H 0.103 0.897 46 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.170 -3.089 28.670 28.836 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.074 3.926 3 H 0.077 0.923 4 N -0.361 5.361 5 C -0.370 4.370 6 H 0.088 0.912 7 C -0.210 4.210 8 N -0.579 5.579 9 Si 0.737 3.263 10 H -0.218 1.218 11 H -0.218 1.218 12 H -0.208 1.208 13 C 0.017 3.983 14 H 0.081 0.919 15 C -0.041 4.041 16 N -0.348 5.348 17 C 0.303 3.697 18 O -0.418 6.418 19 C -0.172 4.172 20 C -0.085 4.085 21 C -0.113 4.113 22 C -0.160 4.160 23 C -0.348 4.348 24 S 0.352 5.648 25 C -0.344 4.344 26 C -0.051 4.051 27 C -0.033 4.033 28 O -0.276 6.276 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.075 0.925 32 H 0.223 0.777 33 H 0.064 0.936 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.112 0.888 38 H 0.100 0.900 39 H 0.100 0.900 40 H 0.158 0.842 41 H 0.181 0.819 42 H 0.182 0.818 43 H 0.096 0.904 44 H 0.109 0.891 45 H 0.121 0.879 46 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 0.938 -3.428 29.075 29.291 hybrid contribution -0.691 0.961 -1.341 1.789 sum 0.247 -2.467 27.734 27.844 Atomic orbital electron populations 1.22414 0.98663 1.01601 0.99536 1.20198 0.92822 0.94614 0.84978 0.92311 1.42353 1.77860 1.10951 1.04897 1.19253 1.36518 0.93852 0.87344 0.91161 1.24740 1.02255 0.95963 0.98028 1.69676 1.50824 1.08627 1.28804 0.86202 0.77760 0.78582 0.83717 1.21782 1.21833 1.20774 1.22972 0.97580 0.83000 0.94756 0.91917 1.22489 1.01905 0.95878 0.83815 1.48221 1.54882 1.12697 1.19029 1.20679 0.77300 0.87913 0.83850 1.90704 1.53001 1.17964 1.80111 1.21663 1.02297 0.99337 0.93940 1.20058 1.01248 0.96232 0.91009 1.18981 0.94732 1.00258 0.97286 1.20146 1.01603 1.01010 0.93231 1.25610 1.00143 1.04715 1.04311 1.84335 1.19721 1.48193 1.12590 1.25545 1.03104 1.04398 1.01363 1.22513 1.00852 0.81771 1.00007 1.22902 0.99491 0.95233 0.85657 1.88106 1.67737 1.25715 1.46027 0.92896 0.94683 0.92452 0.77690 0.93586 0.88238 0.90175 0.88768 0.88768 0.90046 0.89971 0.84157 0.81904 0.81773 0.90384 0.89137 0.87867 0.92879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.99 9.06 37.16 0.34 -2.65 16 2 C 0.18 3.71 2.77 -67.93 -0.19 3.52 16 3 H 0.06 1.18 8.08 -51.93 -0.42 0.76 16 4 N -0.72 -18.30 5.10 -53.43 -0.27 -18.57 16 5 C -0.24 -6.67 9.93 -15.06 -0.15 -6.82 16 6 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 7 C -0.01 -0.40 5.50 -17.43 -0.10 -0.50 16 8 N -0.93 -28.42 13.06 55.49 0.72 -27.70 16 9 Si 0.91 22.60 29.55 -169.99 -5.02 17.57 16 10 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 11 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 12 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 13 C 0.08 1.30 2.61 -26.57 -0.07 1.23 16 14 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 15 C 0.08 1.18 5.82 -3.53 -0.02 1.16 16 16 N -0.61 -7.57 3.02 -172.27 -0.52 -8.09 16 17 C 0.51 6.39 7.71 -10.98 -0.08 6.30 16 18 O -0.54 -8.70 15.45 5.56 0.09 -8.61 16 19 C -0.13 -1.11 4.06 -27.88 -0.11 -1.22 16 20 C -0.05 -0.39 4.76 -27.88 -0.13 -0.53 16 21 C -0.10 -0.80 5.06 -106.25 -0.54 -1.34 16 22 C -0.13 -0.94 9.98 -41.21 -0.41 -1.35 16 23 C -0.21 -1.41 11.23 29.04 0.33 -1.08 16 24 S 0.09 0.61 23.34 -107.50 -2.51 -1.90 16 25 C -0.21 -1.60 10.98 29.04 0.32 -1.28 16 26 C 0.07 0.68 6.54 -3.53 -0.02 0.66 16 27 C 0.05 0.54 6.99 37.31 0.26 0.80 16 28 O -0.36 -5.97 9.24 -35.23 -0.33 -6.29 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.03 0.53 6.41 -51.93 -0.33 0.20 16 31 H 0.06 1.11 7.56 -51.93 -0.39 0.72 16 32 H 0.39 10.67 7.58 -40.82 -0.31 10.36 16 33 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 34 H 0.10 1.54 7.08 -51.93 -0.37 1.17 16 35 H 0.08 1.11 6.26 -51.93 -0.33 0.79 16 36 H 0.09 0.63 8.02 -51.93 -0.42 0.22 16 37 H 0.09 0.68 7.66 -51.93 -0.40 0.28 16 38 H 0.08 0.79 8.08 -51.93 -0.42 0.37 16 39 H 0.08 0.76 8.09 -51.93 -0.42 0.34 16 40 H 0.14 0.83 8.06 -52.48 -0.42 0.40 16 41 H 0.16 0.74 8.06 -52.48 -0.42 0.31 16 42 H 0.16 1.07 8.06 -52.49 -0.42 0.64 16 43 H 0.08 0.70 8.14 -51.93 -0.42 0.27 16 44 H 0.09 0.60 6.06 -51.93 -0.31 0.28 16 45 H 0.10 1.00 8.14 -51.93 -0.42 0.58 16 46 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 LS Contribution 384.95 15.07 5.80 5.80 Total: -1.00 -33.45 384.95 -9.67 -43.12 By element: Atomic # 1 Polarization: 14.80 SS G_CDS: -7.04 Total: 7.76 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -0.58 Total: -3.09 kcal Atomic # 7 Polarization: -54.29 SS G_CDS: -0.07 Total: -54.36 kcal Atomic # 8 Polarization: -14.66 SS G_CDS: -0.24 Total: -14.90 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.57 kcal Atomic # 16 Polarization: 0.61 SS G_CDS: -2.51 Total: -1.90 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -33.45 -9.67 -43.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330399597.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.979 kcal (2) G-P(sol) polarization free energy of solvation -33.451 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -23.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.666 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.138 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds