Wall clock time and date at job start Tue Mar 31 2020 20:39:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08995 * 109.46720 * 2 1 4 4 N 1.46498 * 109.46702 * 239.99989 * 2 1 3 5 5 C 1.36941 * 120.00054 * 85.00559 * 4 2 1 6 6 H 1.08001 * 119.99869 * 359.97438 * 5 4 2 7 7 C 1.38809 * 120.00176 * 179.97438 * 5 4 2 8 8 N 1.31615 * 119.99793 * 359.97438 * 7 5 4 9 9 Si 1.86801 * 120.00125 * 179.97438 * 7 5 4 10 10 H 1.48503 * 109.47209 * 59.99587 * 9 7 5 11 11 H 1.48497 * 109.47123 * 179.97438 * 9 7 5 12 12 H 1.48501 * 109.46906 * 299.99755 * 9 7 5 13 13 C 1.52997 * 109.46976 * 120.00146 * 2 1 3 14 14 H 1.09002 * 109.50909 * 300.09882 * 13 2 1 15 15 C 1.53295 * 109.51227 * 180.02562 * 13 2 1 16 16 N 1.47148 * 108.38524 * 187.72475 * 15 13 2 17 17 C 1.34780 * 120.97846 * 230.51363 * 16 15 13 18 18 O 1.21280 * 120.00423 * 359.97438 * 17 16 15 19 19 C 1.50701 * 119.99795 * 180.02562 * 17 16 15 20 20 C 1.52997 * 109.47212 * 179.97438 * 19 17 16 21 21 C 1.50697 * 109.47466 * 179.97438 * 20 19 17 22 22 C 1.38421 * 122.54069 * 269.73676 * 21 20 19 23 23 C 1.33391 * 114.91982 * 179.75813 * 22 21 20 24 24 S 1.75881 * 109.59442 * 0.47793 * 23 22 21 25 25 C 1.33387 * 122.53849 * 90.02093 * 21 20 19 26 26 C 1.47149 * 118.03988 * 50.78317 * 16 15 13 27 27 C 1.53711 * 108.15830 * 309.16197 * 26 16 15 28 28 O 1.42961 * 109.15228 * 52.53696 * 27 26 16 29 29 H 1.09001 * 109.47375 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.47286 * 300.00095 * 1 2 3 31 31 H 1.09003 * 109.47347 * 59.99602 * 1 2 3 32 32 H 0.96999 * 119.99959 * 264.99561 * 4 2 1 33 33 H 0.97003 * 120.00311 * 179.97438 * 8 7 5 34 34 H 1.09005 * 109.68299 * 67.99540 * 15 13 2 35 35 H 1.09004 * 109.71142 * 307.46311 * 15 13 2 36 36 H 1.09002 * 109.47060 * 299.99722 * 19 17 16 37 37 H 1.09001 * 109.47380 * 59.99809 * 19 17 16 38 38 H 1.09002 * 109.47153 * 299.99998 * 20 19 17 39 39 H 1.08998 * 109.47533 * 59.99628 * 20 19 17 40 40 H 1.07997 * 122.53936 * 0.02562 * 22 21 20 41 41 H 1.08001 * 125.20381 * 180.21019 * 23 22 21 42 42 H 1.08005 * 125.20560 * 0.02961 * 25 21 20 43 43 H 1.08999 * 109.68019 * 68.93392 * 26 16 15 44 44 H 1.08992 * 109.68498 * 189.49193 * 26 16 15 45 45 H 1.09007 * 109.65849 * 292.56744 * 27 26 16 46 46 H 1.09004 * 109.48517 * 172.40113 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8932 1.0276 0.0000 4 7 2.0182 -0.6906 -1.1962 5 6 2.1491 -0.0075 -2.3758 6 1 1.8919 1.0404 -2.4243 7 6 2.6122 -0.6617 -3.5091 8 7 2.9260 -1.9385 -3.4497 9 14 2.7900 0.2701 -5.1183 10 1 3.7444 1.3932 -4.9372 11 1 3.3001 -0.6480 -6.1681 12 1 1.4672 0.8059 -5.5288 13 6 2.0400 -0.7213 1.2492 14 1 1.6755 -0.2090 2.1396 15 6 3.5729 -0.7213 1.2505 16 7 4.0361 -1.5759 2.3552 17 6 4.9514 -1.1316 3.2392 18 8 5.4063 -0.0126 3.1305 19 6 5.4106 -2.0259 4.3620 20 6 6.4439 -1.2856 5.2135 21 6 6.9026 -2.1795 6.3366 22 6 6.2776 -2.2040 7.5714 23 6 6.8060 -3.0552 8.4521 24 16 8.1781 -3.8806 7.7244 25 6 7.9451 -3.0031 6.2180 26 6 3.4749 -2.9319 2.4629 27 6 1.9428 -2.8222 2.4057 28 8 1.5692 -2.0712 1.2480 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5139 -0.8900 32 1 2.2490 -1.6318 -1.1526 33 1 3.2493 -2.3958 -4.2418 34 1 3.9399 0.2951 1.3938 35 1 3.9414 -1.1144 0.3030 36 1 4.5564 -2.2983 4.9819 37 1 5.8610 -2.9277 3.9473 38 1 7.2980 -1.0134 4.5933 39 1 5.9940 -0.3836 5.6282 40 1 5.4240 -1.5842 7.8028 41 1 6.4489 -3.2103 9.4595 42 1 8.5535 -3.1139 5.3325 43 1 3.8330 -3.5441 1.6353 44 1 3.7769 -3.3801 3.4094 45 1 1.5776 -2.3178 3.3004 46 1 1.5087 -3.8204 2.3478 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001330399599.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:39:59 Heat of formation + Delta-G solvation = -53.723456 kcal Electronic energy + Delta-G solvation = -27099.281201 eV Core-core repulsion = 23308.220574 eV Total energy + Delta-G solvation = -3791.060628 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.46991 -39.83128 -39.01489 -37.07664 -35.74064 -34.23028 -33.81756 -31.66352 -30.28175 -30.04228 -28.80726 -26.52285 -25.70438 -24.84181 -23.78209 -22.90981 -21.23673 -20.07585 -19.61311 -19.29913 -18.64767 -18.04711 -17.59678 -17.01526 -16.85928 -16.41597 -16.06091 -15.95135 -15.91388 -15.11252 -15.03973 -14.85939 -14.63365 -14.13080 -14.05208 -13.93500 -13.83762 -13.49676 -13.23144 -13.19400 -13.06653 -12.84742 -12.73118 -12.60070 -12.49432 -12.48099 -12.22476 -11.97475 -11.78898 -11.67705 -11.59999 -11.49526 -11.07639 -10.93376 -10.78955 -9.68224 -9.57408 -9.26079 -8.94228 -7.89389 -5.16427 0.12693 0.80468 1.12026 1.47620 1.50209 1.55801 1.57264 1.71022 1.96123 2.58169 2.82871 3.44136 3.45516 3.72384 3.94347 3.96500 4.00531 4.01897 4.09168 4.19361 4.24278 4.24892 4.34484 4.36992 4.51935 4.62507 4.63363 4.64121 4.71492 4.81721 4.85549 4.87430 4.88417 5.04201 5.10238 5.13192 5.19121 5.21995 5.35121 5.53932 5.54141 5.61260 5.61450 6.28398 6.34554 6.36881 7.09847 7.39391 8.15812 8.41271 9.33669 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.019537 B = 0.002215 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1432.849430 B =12635.404690 C =13190.985577 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.171 3.829 3 H 0.057 0.943 4 N -0.725 5.725 5 C -0.236 4.236 6 H 0.074 0.926 7 C -0.076 4.076 8 N -0.967 5.967 9 Si 0.968 3.032 10 H -0.281 1.281 11 H -0.297 1.297 12 H -0.279 1.279 13 C 0.095 3.905 14 H 0.077 0.923 15 C 0.094 3.906 16 N -0.614 5.614 17 C 0.508 3.492 18 O -0.587 6.587 19 C -0.119 4.119 20 C -0.040 4.040 21 C -0.105 4.105 22 C -0.141 4.141 23 C -0.210 4.210 24 S 0.091 5.909 25 C -0.221 4.221 26 C 0.070 3.930 27 C 0.041 3.959 28 O -0.385 6.385 29 H 0.045 0.955 30 H 0.067 0.933 31 H 0.037 0.963 32 H 0.377 0.623 33 H 0.248 0.752 34 H 0.078 0.922 35 H 0.055 0.945 36 H 0.122 0.878 37 H 0.111 0.889 38 H 0.064 0.936 39 H 0.073 0.927 40 H 0.153 0.847 41 H 0.185 0.815 42 H 0.170 0.830 43 H 0.070 0.930 44 H 0.133 0.867 45 H 0.070 0.930 46 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.769 -5.995 27.388 28.439 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.062 3.938 3 H 0.075 0.925 4 N -0.366 5.366 5 C -0.368 4.368 6 H 0.092 0.908 7 C -0.268 4.268 8 N -0.618 5.618 9 Si 0.797 3.203 10 H -0.207 1.207 11 H -0.224 1.224 12 H -0.205 1.205 13 C 0.035 3.965 14 H 0.094 0.906 15 C -0.030 4.030 16 N -0.347 5.347 17 C 0.299 3.701 18 O -0.467 6.467 19 C -0.159 4.159 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.171 4.171 23 C -0.345 4.345 24 S 0.355 5.645 25 C -0.356 4.356 26 C -0.052 4.052 27 C -0.036 4.036 28 O -0.304 6.304 29 H 0.064 0.936 30 H 0.086 0.914 31 H 0.056 0.944 32 H 0.210 0.790 33 H 0.057 0.943 34 H 0.097 0.903 35 H 0.074 0.926 36 H 0.140 0.860 37 H 0.129 0.871 38 H 0.083 0.917 39 H 0.092 0.908 40 H 0.171 0.829 41 H 0.202 0.798 42 H 0.187 0.813 43 H 0.088 0.912 44 H 0.151 0.849 45 H 0.088 0.912 46 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 5.948 -6.467 27.597 28.962 hybrid contribution -0.504 1.271 -1.821 2.277 sum 5.444 -5.196 25.775 26.852 Atomic orbital electron populations 1.22168 0.96972 1.01119 1.00512 1.20512 0.93708 0.94582 0.84959 0.92507 1.42472 1.78006 1.10469 1.05692 1.19586 1.34636 0.94098 0.88446 0.90779 1.25475 1.03281 0.96850 1.01185 1.69820 1.52686 1.10098 1.29202 0.85295 0.77848 0.77297 0.79824 1.20744 1.22385 1.20509 1.22579 0.91437 0.83999 0.98450 0.90551 1.22017 0.95502 0.96054 0.89403 1.48348 1.42116 1.16125 1.28132 1.21488 0.77678 0.87742 0.83235 1.90679 1.57430 1.22940 1.75700 1.21671 1.01408 0.98545 0.94260 1.19935 0.98191 0.96370 0.93501 1.18946 0.97007 0.99509 0.96293 1.20298 1.02824 1.01389 0.92595 1.25912 1.00932 1.02692 1.05011 1.84318 1.31168 1.43010 1.05987 1.25713 1.03865 1.03444 1.02612 1.22796 0.95111 0.82189 1.05126 1.23304 0.93337 0.98321 0.88629 1.88063 1.75614 1.23394 1.43348 0.93560 0.91383 0.94384 0.78981 0.94274 0.90342 0.92649 0.85972 0.87063 0.91737 0.90828 0.82918 0.79798 0.81280 0.91194 0.84904 0.91205 0.85565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.33 9.35 71.98 0.67 -4.66 16 2 C 0.17 6.83 2.73 44.99 0.12 6.96 16 3 H 0.06 2.28 8.08 -2.39 -0.02 2.26 16 4 N -0.73 -36.73 4.29 -322.95 -1.39 -38.12 16 5 C -0.24 -13.18 9.93 84.03 0.83 -12.34 16 6 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 7 C -0.08 -4.40 5.50 84.86 0.47 -3.94 16 8 N -0.97 -59.91 13.06 21.65 0.28 -59.63 16 9 Si 0.97 47.06 29.55 68.60 2.03 49.09 16 10 H -0.28 -13.27 7.11 99.48 0.71 -12.56 16 11 H -0.30 -14.61 7.11 99.48 0.71 -13.90 16 12 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 13 C 0.09 3.15 2.52 30.69 0.08 3.23 16 14 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 15 C 0.09 3.35 5.86 86.35 0.51 3.86 16 16 N -0.61 -17.01 3.01 -816.55 -2.46 -19.47 16 17 C 0.51 13.75 7.71 87.66 0.68 14.43 16 18 O -0.59 -21.10 15.45 -3.03 -0.05 -21.15 16 19 C -0.12 -1.97 4.05 29.85 0.12 -1.85 16 20 C -0.04 -0.71 4.76 29.85 0.14 -0.57 16 21 C -0.10 -1.63 5.06 -20.92 -0.11 -1.73 16 22 C -0.14 -1.86 9.98 21.22 0.21 -1.65 16 23 C -0.21 -2.44 11.23 66.72 0.75 -1.69 16 24 S 0.09 1.18 23.34 -56.49 -1.32 -0.14 16 25 C -0.22 -3.29 10.98 66.72 0.73 -2.56 16 26 C 0.07 1.40 6.57 86.49 0.57 1.97 16 27 C 0.04 0.86 7.00 72.22 0.51 1.36 16 28 O -0.39 -12.49 9.23 -148.98 -1.37 -13.86 16 29 H 0.05 1.75 7.69 -2.39 -0.02 1.73 16 30 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 31 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 32 H 0.38 20.86 7.21 -92.71 -0.67 20.19 16 33 H 0.25 15.02 8.31 -92.71 -0.77 14.25 16 34 H 0.08 3.02 7.08 -2.38 -0.02 3.00 16 35 H 0.06 2.43 7.28 -2.38 -0.02 2.41 16 36 H 0.12 1.36 7.67 -2.39 -0.02 1.35 16 37 H 0.11 1.51 8.01 -2.39 -0.02 1.50 16 38 H 0.06 1.37 8.08 -2.39 -0.02 1.35 16 39 H 0.07 1.44 8.09 -2.39 -0.02 1.42 16 40 H 0.15 1.57 8.06 -2.91 -0.02 1.55 16 41 H 0.18 1.24 8.06 -2.91 -0.02 1.21 16 42 H 0.17 2.21 8.06 -2.91 -0.02 2.19 16 43 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 44 H 0.13 1.48 6.05 -2.39 -0.01 1.47 16 45 H 0.07 1.20 8.14 -2.38 -0.02 1.18 16 46 H 0.13 2.03 8.14 -2.38 -0.02 2.01 16 Total: -1.00 -73.42 386.87 2.31 -71.10 By element: Atomic # 1 Polarization: 31.06 SS G_CDS: 0.31 Total: 31.37 kcal Atomic # 6 Polarization: -5.46 SS G_CDS: 6.28 Total: 0.82 kcal Atomic # 7 Polarization: -113.66 SS G_CDS: -3.56 Total: -117.22 kcal Atomic # 8 Polarization: -33.59 SS G_CDS: -1.42 Total: -35.01 kcal Atomic # 14 Polarization: 47.06 SS G_CDS: 2.03 Total: 49.09 kcal Atomic # 16 Polarization: 1.18 SS G_CDS: -1.32 Total: -0.14 kcal Total: -73.42 2.31 -71.10 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001330399599.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.380 kcal (2) G-P(sol) polarization free energy of solvation -73.417 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.037 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.104 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds