Wall clock time and date at job start Tue Mar 31 2020 20:48:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46736 * 2 1 4 4 C 1.52991 * 109.47405 * 120.00069 * 2 1 3 5 5 N 1.46497 * 109.47319 * 174.99923 * 4 2 1 6 6 C 1.46499 * 119.99848 * 270.00288 * 5 4 2 7 7 C 1.34780 * 120.00051 * 89.99907 * 5 4 2 8 8 O 1.21552 * 119.99748 * 4.84507 * 7 5 4 9 9 C 1.47850 * 119.99936 * 184.84345 * 7 5 4 10 10 C 1.39551 * 120.54645 * 141.71380 * 9 7 5 11 11 N 1.31652 * 120.62642 * 179.97438 * 10 9 7 12 12 C 1.31939 * 121.90490 * 359.97438 * 11 10 9 13 13 C 1.38536 * 121.04487 * 0.02562 * 12 11 10 14 14 F 1.35098 * 120.37288 * 179.97438 * 13 12 11 15 15 C 1.38609 * 119.25075 * 359.97438 * 13 12 11 16 16 N 1.46895 * 109.46605 * 240.00391 * 2 1 3 17 17 C 1.46897 * 111.00528 * 85.00017 * 16 2 1 18 18 C 1.50695 * 109.47560 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99875 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00249 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00156 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99773 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00094 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99567 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99988 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46920 * 90.00143 * 25 23 21 27 27 H 1.48493 * 109.46962 * 210.00224 * 25 23 21 28 28 H 1.48493 * 109.47038 * 330.00366 * 25 23 21 29 29 H 1.09004 * 109.46752 * 299.99812 * 1 2 3 30 30 H 1.09000 * 109.47557 * 59.99647 * 1 2 3 31 31 H 1.09001 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46952 * 54.99535 * 4 2 1 33 33 H 1.09005 * 109.47186 * 295.00220 * 4 2 1 34 34 H 1.09000 * 109.47207 * 264.83533 * 6 5 4 35 35 H 1.08992 * 109.47702 * 24.83674 * 6 5 4 36 36 H 1.09004 * 109.47143 * 144.84088 * 6 5 4 37 37 H 1.08003 * 119.68875 * 359.97438 * 10 9 7 38 38 H 1.07998 * 119.48009 * 180.02562 * 12 11 10 39 39 H 1.08007 * 120.86757 * 180.02562 * 15 13 12 40 40 H 1.00900 * 111.00291 * 321.04375 * 16 2 1 41 41 H 1.09003 * 109.46881 * 299.99895 * 17 16 2 42 42 H 1.08996 * 109.47402 * 59.99292 * 17 16 2 43 43 H 0.97005 * 120.00092 * 359.97438 * 20 18 17 44 44 H 0.97004 * 119.99408 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 3.5001 -0.8263 1.1904 6 6 4.1258 -1.9919 0.5610 7 6 4.2676 0.1493 1.7154 8 8 3.7516 1.0722 2.3149 9 6 5.7373 0.0967 1.5623 10 6 6.4686 1.2630 1.3335 11 7 7.7773 1.2181 1.1973 12 6 8.4475 0.0840 1.2706 13 6 7.7959 -1.1177 1.4953 14 9 8.4956 -2.2712 1.5673 15 6 6.4180 -1.1233 1.6454 16 7 2.0196 -0.6924 -1.1995 17 6 2.0824 0.2226 -2.3469 18 6 2.5883 -0.5214 -3.5558 19 8 2.8694 -1.6982 -3.4698 20 7 2.7284 0.1207 -4.7325 21 6 3.1891 -0.5561 -5.8321 22 1 3.4395 -1.6040 -5.7556 23 6 3.3331 0.1058 -7.0454 24 7 3.0280 1.3806 -7.1386 25 14 3.9602 -0.8166 -8.5439 26 1 2.8117 -1.4005 -9.2821 27 1 4.6938 0.1213 -9.4312 28 1 4.8736 -1.9038 -8.1094 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 4.3659 -2.7320 1.3244 35 1 3.4373 -2.4272 -0.1632 36 1 5.0400 -1.6838 0.0535 37 1 5.9562 2.2115 1.2675 38 1 9.5211 0.0925 1.1535 39 1 5.8835 -2.0451 1.8219 40 1 1.4495 -1.4978 -1.4101 41 1 1.0869 0.6164 -2.5525 42 1 2.7587 1.0462 -2.1183 43 1 2.5032 1.0617 -4.8013 44 1 3.1289 1.8427 -7.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331421645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:12 Heat of formation + Delta-G solvation = -63.525315 kcal Electronic energy + Delta-G solvation = -29296.171064 eV Core-core repulsion = 24970.764971 eV Total energy + Delta-G solvation = -4325.406093 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -49.28178 -40.95018 -39.36689 -38.37786 -36.90847 -35.19599 -33.94168 -32.97258 -31.39122 -31.25479 -30.74810 -27.54843 -26.72084 -26.26713 -24.41885 -23.98657 -23.66318 -21.25694 -20.02263 -19.27949 -18.01326 -17.93278 -17.56830 -17.38275 -16.61714 -16.30123 -16.10179 -15.82230 -15.43943 -15.30569 -14.70675 -14.56907 -14.34215 -13.98804 -13.92863 -13.74805 -13.63898 -13.39518 -13.20194 -12.91372 -12.62502 -12.50206 -12.27723 -12.20206 -11.93032 -11.73897 -11.58223 -11.38470 -11.07509 -11.03109 -10.56250 -10.42260 -10.24985 -10.16770 -9.74419 -9.54020 -9.32887 -8.88230 -8.43893 -8.05601 -7.98520 -6.44697 -3.85769 0.29877 0.65927 2.46000 2.81998 3.15239 3.24341 3.29836 3.34956 3.63169 3.87171 4.04034 4.05886 4.18502 4.29595 4.32693 4.42271 4.74117 4.85050 4.98623 5.08984 5.19649 5.21560 5.24180 5.26485 5.29580 5.37685 5.40098 5.56767 5.62653 5.68654 5.71036 5.86822 5.95659 6.01214 6.04191 6.17838 6.23538 6.39596 7.10586 7.22883 7.42814 7.51936 7.60532 7.93757 8.02725 8.57394 9.14442 9.50975 10.01700 10.72943 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.003250 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.221033 B = 8613.755436 C =10438.371571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.063 3.937 3 H 0.081 0.919 4 C 0.129 3.871 5 N -0.583 5.583 6 C 0.077 3.923 7 C 0.564 3.436 8 O -0.536 6.536 9 C -0.147 4.147 10 C 0.146 3.854 11 N -0.458 5.458 12 C 0.094 3.906 13 C 0.042 3.958 14 F -0.126 7.126 15 C -0.084 4.084 16 N -0.659 5.659 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.585 6.585 20 N -0.563 5.563 21 C -0.300 4.300 22 H 0.103 0.897 23 C 0.023 3.977 24 N -0.901 5.901 25 Si 0.930 3.070 26 H -0.278 1.278 27 H -0.283 1.283 28 H -0.269 1.269 29 H 0.062 0.938 30 H 0.060 0.940 31 H 0.059 0.941 32 H 0.080 0.920 33 H 0.088 0.912 34 H 0.049 0.951 35 H 0.098 0.902 36 H 0.071 0.929 37 H 0.173 0.827 38 H 0.172 0.828 39 H 0.161 0.839 40 H 0.348 0.652 41 H 0.043 0.957 42 H 0.082 0.918 43 H 0.392 0.608 44 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.167 -2.856 18.846 19.184 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C -0.048 4.048 3 H 0.100 0.900 4 C 0.006 3.994 5 N -0.313 5.313 6 C -0.065 4.065 7 C 0.350 3.650 8 O -0.414 6.414 9 C -0.152 4.152 10 C -0.012 4.012 11 N -0.165 5.165 12 C -0.065 4.065 13 C 0.021 3.979 14 F -0.105 7.105 15 C -0.110 4.110 16 N -0.291 5.291 17 C -0.080 4.080 18 C 0.226 3.774 19 O -0.470 6.470 20 N -0.199 5.199 21 C -0.430 4.430 22 H 0.121 0.879 23 C -0.179 4.179 24 N -0.542 5.542 25 Si 0.757 3.243 26 H -0.204 1.204 27 H -0.209 1.209 28 H -0.194 1.194 29 H 0.081 0.919 30 H 0.079 0.921 31 H 0.078 0.922 32 H 0.098 0.902 33 H 0.107 0.893 34 H 0.067 0.933 35 H 0.117 0.883 36 H 0.090 0.910 37 H 0.190 0.810 38 H 0.189 0.811 39 H 0.178 0.822 40 H 0.167 0.833 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.225 0.775 44 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.238 -2.241 19.046 19.448 hybrid contribution -1.092 -0.736 -1.147 1.746 sum 2.146 -2.977 17.899 18.271 Atomic orbital electron populations 1.22446 0.96642 1.02341 1.02583 1.22039 0.92755 0.98853 0.91198 0.90046 1.21574 0.78656 1.01434 0.97748 1.47433 1.06562 1.21050 1.56220 1.22175 1.00405 0.86627 0.97324 1.17962 0.85591 0.82283 0.79125 1.90792 1.74245 1.34260 1.42086 1.20882 0.95334 0.94353 1.04642 1.23017 0.88953 0.97930 0.91348 1.67841 1.08931 1.27520 1.12185 1.23156 1.01605 0.86380 0.95355 1.18642 0.90381 0.83562 1.05335 1.91552 1.78441 1.46684 1.93808 1.22226 0.92794 0.99688 0.96333 1.60201 1.57300 1.09113 1.02523 1.21668 0.99845 0.95666 0.90845 1.19792 0.85203 0.88212 0.84149 1.90503 1.55566 1.16245 1.84680 1.41874 1.57566 1.12488 1.07984 1.19687 1.40096 0.96432 0.86761 0.87948 1.25267 0.97594 0.95753 0.99263 1.69616 1.48524 1.08868 1.27180 0.85864 0.78884 0.78982 0.80607 1.20413 1.20890 1.19407 0.91940 0.92136 0.92195 0.90205 0.89342 0.93291 0.88337 0.91041 0.81002 0.81103 0.82176 0.83257 0.93885 0.89969 0.77493 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.73 9.16 37.16 0.34 -1.39 16 2 C 0.06 0.72 2.89 -67.72 -0.20 0.52 16 3 H 0.08 1.06 7.80 -51.93 -0.40 0.66 16 4 C 0.13 1.32 5.16 -4.05 -0.02 1.30 16 5 N -0.58 -6.61 2.73 -182.70 -0.50 -7.11 16 6 C 0.08 0.81 8.42 59.85 0.50 1.31 16 7 C 0.56 7.23 7.38 -12.33 -0.09 7.14 16 8 O -0.54 -8.18 16.47 5.32 0.09 -8.10 16 9 C -0.15 -1.71 5.27 -104.83 -0.55 -2.26 16 10 C 0.15 1.73 10.80 -17.14 -0.19 1.54 16 11 N -0.46 -5.41 10.34 -12.86 -0.13 -5.55 16 12 C 0.09 0.94 11.16 -17.40 -0.19 0.74 16 13 C 0.04 0.43 7.33 -39.33 -0.29 0.14 16 14 F -0.13 -1.27 17.28 2.25 0.04 -1.23 16 15 C -0.08 -0.84 7.68 -38.80 -0.30 -1.14 16 16 N -0.66 -9.35 4.23 -108.00 -0.46 -9.80 16 17 C 0.05 0.88 5.96 -4.98 -0.03 0.85 16 18 C 0.44 9.98 7.82 -10.99 -0.09 9.89 16 19 O -0.59 -14.97 15.78 5.55 0.09 -14.89 16 20 N -0.56 -14.00 5.29 -10.96 -0.06 -14.05 16 21 C -0.30 -8.25 9.68 -14.93 -0.14 -8.39 16 22 H 0.10 2.94 7.16 -52.48 -0.38 2.57 16 23 C 0.02 0.61 5.50 -17.46 -0.10 0.51 16 24 N -0.90 -24.37 13.05 55.50 0.72 -23.64 16 25 Si 0.93 20.85 29.55 -169.99 -5.02 15.83 16 26 H -0.28 -6.15 7.11 56.52 0.40 -5.75 16 27 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 28 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 29 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 31 H 0.06 0.52 8.13 -51.93 -0.42 0.10 16 32 H 0.08 0.68 8.07 -51.93 -0.42 0.26 16 33 H 0.09 0.91 7.36 -51.93 -0.38 0.53 16 34 H 0.05 0.38 6.87 -51.93 -0.36 0.02 16 35 H 0.10 1.16 7.06 -51.93 -0.37 0.79 16 36 H 0.07 0.82 5.84 -51.93 -0.30 0.52 16 37 H 0.17 1.89 8.05 -52.48 -0.42 1.47 16 38 H 0.17 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.16 1.30 5.30 -52.48 -0.28 1.03 16 40 H 0.35 5.04 8.17 -39.29 -0.32 4.72 16 41 H 0.04 0.67 7.44 -51.93 -0.39 0.28 16 42 H 0.08 1.36 8.05 -51.93 -0.42 0.94 16 43 H 0.39 9.43 7.90 -40.82 -0.32 9.11 16 44 H 0.27 6.97 8.31 -40.82 -0.34 6.63 16 LS Contribution 375.43 15.07 5.66 5.66 Total: -1.00 -32.10 375.43 -6.46 -38.56 By element: Atomic # 1 Polarization: 19.09 SS G_CDS: -5.55 Total: 13.55 kcal Atomic # 6 Polarization: 12.11 SS G_CDS: -1.34 Total: 10.78 kcal Atomic # 7 Polarization: -59.73 SS G_CDS: -0.42 Total: -60.16 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: 0.18 Total: -22.98 kcal Atomic # 9 Polarization: -1.27 SS G_CDS: 0.04 Total: -1.23 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.83 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.10 -6.46 -38.56 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331421645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.962 kcal (2) G-P(sol) polarization free energy of solvation -32.104 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.459 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.563 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.525 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.67 seconds