Wall clock time and date at job start Tue Mar 31 2020 20:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.08997 * 109.46736 * 2 1 4 4 C 1.52991 * 109.47405 * 120.00069 * 2 1 3 5 5 N 1.46497 * 109.47319 * 174.99923 * 4 2 1 6 6 C 1.46499 * 119.99848 * 270.00288 * 5 4 2 7 7 C 1.34780 * 120.00051 * 89.99907 * 5 4 2 8 8 O 1.21552 * 119.99748 * 4.84507 * 7 5 4 9 9 C 1.47850 * 119.99936 * 184.84345 * 7 5 4 10 10 C 1.39551 * 120.54645 * 141.71380 * 9 7 5 11 11 N 1.31652 * 120.62642 * 179.97438 * 10 9 7 12 12 C 1.31939 * 121.90490 * 359.97438 * 11 10 9 13 13 C 1.38536 * 121.04487 * 0.02562 * 12 11 10 14 14 F 1.35098 * 120.37288 * 179.97438 * 13 12 11 15 15 C 1.38609 * 119.25075 * 359.97438 * 13 12 11 16 16 N 1.46895 * 109.46605 * 240.00391 * 2 1 3 17 17 C 1.46897 * 111.00528 * 85.00017 * 16 2 1 18 18 C 1.50695 * 109.47560 * 179.97438 * 17 16 2 19 19 O 1.21294 * 119.99875 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00249 * 179.97438 * 18 17 16 21 21 C 1.37100 * 120.00156 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99773 * 0.02562 * 21 20 18 23 23 C 1.38956 * 120.00094 * 179.97438 * 21 20 18 24 24 N 1.31415 * 119.99567 * 0.02562 * 23 21 20 25 25 Si 1.86801 * 119.99988 * 180.02562 * 23 21 20 26 26 H 1.48497 * 109.46920 * 90.00143 * 25 23 21 27 27 H 1.48493 * 109.46962 * 210.00224 * 25 23 21 28 28 H 1.48493 * 109.47038 * 330.00366 * 25 23 21 29 29 H 1.09004 * 109.46752 * 299.99812 * 1 2 3 30 30 H 1.09000 * 109.47557 * 59.99647 * 1 2 3 31 31 H 1.09001 * 109.47210 * 180.02562 * 1 2 3 32 32 H 1.09002 * 109.46952 * 54.99535 * 4 2 1 33 33 H 1.09005 * 109.47186 * 295.00220 * 4 2 1 34 34 H 1.09000 * 109.47207 * 264.83533 * 6 5 4 35 35 H 1.08992 * 109.47702 * 24.83674 * 6 5 4 36 36 H 1.09004 * 109.47143 * 144.84088 * 6 5 4 37 37 H 1.08003 * 119.68875 * 359.97438 * 10 9 7 38 38 H 1.07998 * 119.48009 * 180.02562 * 12 11 10 39 39 H 1.08007 * 120.86757 * 180.02562 * 15 13 12 40 40 H 1.00900 * 111.00291 * 321.04375 * 16 2 1 41 41 H 1.09003 * 109.46881 * 299.99895 * 17 16 2 42 42 H 1.08996 * 109.47402 * 59.99292 * 17 16 2 43 43 H 0.97005 * 120.00092 * 359.97438 * 20 18 17 44 44 H 0.97004 * 119.99408 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2491 5 7 3.5001 -0.8263 1.1904 6 6 4.1258 -1.9919 0.5610 7 6 4.2676 0.1493 1.7154 8 8 3.7516 1.0722 2.3149 9 6 5.7373 0.0967 1.5623 10 6 6.4686 1.2630 1.3335 11 7 7.7773 1.2181 1.1973 12 6 8.4475 0.0840 1.2706 13 6 7.7959 -1.1177 1.4953 14 9 8.4956 -2.2712 1.5673 15 6 6.4180 -1.1233 1.6454 16 7 2.0196 -0.6924 -1.1995 17 6 2.0824 0.2226 -2.3469 18 6 2.5883 -0.5214 -3.5558 19 8 2.8694 -1.6982 -3.4698 20 7 2.7284 0.1207 -4.7325 21 6 3.1891 -0.5561 -5.8321 22 1 3.4395 -1.6040 -5.7556 23 6 3.3331 0.1058 -7.0454 24 7 3.0280 1.3806 -7.1386 25 14 3.9602 -0.8166 -8.5439 26 1 2.8117 -1.4005 -9.2821 27 1 4.6938 0.1213 -9.4312 28 1 4.8736 -1.9038 -8.1094 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0277 0.0005 32 1 1.6054 -1.7197 1.2951 33 1 1.7517 -0.1583 2.1369 34 1 4.3659 -2.7320 1.3244 35 1 3.4373 -2.4272 -0.1632 36 1 5.0400 -1.6838 0.0535 37 1 5.9562 2.2115 1.2675 38 1 9.5211 0.0925 1.1535 39 1 5.8835 -2.0451 1.8219 40 1 1.4495 -1.4978 -1.4101 41 1 1.0869 0.6164 -2.5525 42 1 2.7587 1.0462 -2.1183 43 1 2.5032 1.0617 -4.8013 44 1 3.1289 1.8427 -7.9855 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331421645.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:11 Heat of formation + Delta-G solvation = -86.213919 kcal Electronic energy + Delta-G solvation = -29297.154915 eV Core-core repulsion = 24970.764971 eV Total energy + Delta-G solvation = -4326.389945 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.08090 -41.84428 -40.38312 -40.01667 -38.07406 -36.27910 -35.84037 -33.89283 -33.26498 -32.21290 -31.86113 -28.42653 -27.95608 -27.49605 -25.80530 -25.07395 -24.61420 -22.20590 -21.18939 -20.82668 -19.91007 -18.88961 -18.43100 -18.19999 -17.85938 -17.36233 -17.14582 -16.89546 -16.65065 -16.44679 -16.29036 -16.01263 -15.54836 -15.20232 -15.10002 -14.77761 -14.61396 -14.50101 -14.35875 -13.88951 -13.75046 -13.56458 -13.45420 -13.38393 -13.13987 -13.05753 -12.80572 -12.76550 -12.46429 -12.38980 -12.12475 -11.93593 -11.52290 -11.49444 -11.01625 -10.64732 -10.36277 -10.17301 -10.01183 -9.76877 -9.17295 -8.46618 -5.95261 -0.54588 -0.16971 1.37682 1.41633 1.50923 1.54146 1.93773 2.05711 2.28527 2.48767 2.80697 2.91686 3.20987 3.21541 3.35821 3.54775 3.57136 3.59974 3.89815 4.00214 4.13933 4.30341 4.31356 4.35561 4.39432 4.44497 4.52185 4.56683 4.60575 4.63740 4.75086 4.83554 4.90794 4.99955 5.11307 5.23933 5.36700 5.40858 5.51948 5.87209 6.07475 6.28249 6.46820 6.58302 6.59420 6.98360 7.12535 7.56633 8.10705 8.70891 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009306 B = 0.003250 C = 0.002682 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3008.221033 B = 8613.755436 C =10438.371571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.068 3.932 3 H 0.064 0.936 4 C 0.128 3.872 5 N -0.580 5.580 6 C 0.078 3.922 7 C 0.562 3.438 8 O -0.567 6.567 9 C -0.160 4.160 10 C 0.135 3.865 11 N -0.476 5.476 12 C 0.095 3.905 13 C 0.041 3.959 14 F -0.124 7.124 15 C -0.076 4.076 16 N -0.662 5.662 17 C 0.069 3.931 18 C 0.442 3.558 19 O -0.615 6.615 20 N -0.576 5.576 21 C -0.331 4.331 22 H 0.081 0.919 23 C -0.014 4.014 24 N -0.922 5.922 25 Si 0.992 3.008 26 H -0.270 1.270 27 H -0.273 1.273 28 H -0.272 1.272 29 H 0.076 0.924 30 H 0.051 0.949 31 H 0.071 0.929 32 H 0.104 0.896 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.086 0.914 36 H 0.058 0.942 37 H 0.172 0.828 38 H 0.199 0.801 39 H 0.180 0.820 40 H 0.348 0.652 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.394 0.606 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.092 -3.774 19.365 19.840 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.043 4.043 3 H 0.083 0.917 4 C 0.006 3.994 5 N -0.309 5.309 6 C -0.064 4.064 7 C 0.349 3.651 8 O -0.447 6.447 9 C -0.165 4.165 10 C -0.023 4.023 11 N -0.184 5.184 12 C -0.063 4.063 13 C 0.019 3.981 14 F -0.103 7.103 15 C -0.103 4.103 16 N -0.294 5.294 17 C -0.064 4.064 18 C 0.229 3.771 19 O -0.501 6.501 20 N -0.213 5.213 21 C -0.461 4.461 22 H 0.099 0.901 23 C -0.213 4.213 24 N -0.564 5.564 25 Si 0.815 3.185 26 H -0.196 1.196 27 H -0.198 1.198 28 H -0.196 1.196 29 H 0.095 0.905 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.122 0.878 33 H 0.109 0.891 34 H 0.100 0.900 35 H 0.105 0.895 36 H 0.077 0.923 37 H 0.189 0.811 38 H 0.215 0.785 39 H 0.197 0.803 40 H 0.167 0.833 41 H 0.080 0.920 42 H 0.105 0.895 43 H 0.227 0.773 44 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 3.144 -3.161 19.576 20.077 hybrid contribution -1.052 -0.491 -1.242 1.700 sum 2.092 -3.653 18.334 18.811 Atomic orbital electron populations 1.22368 0.94775 1.03261 1.02896 1.22030 0.94186 0.97757 0.90293 0.91725 1.21680 0.78087 1.02685 0.96973 1.47534 1.07041 1.20889 1.55439 1.22220 0.99423 0.86754 0.98000 1.18123 0.86077 0.82059 0.78808 1.90768 1.74868 1.35453 1.43655 1.20819 0.94866 0.94940 1.05868 1.23089 0.89291 0.98241 0.91677 1.67869 1.08919 1.28484 1.13084 1.23607 1.02830 0.85883 0.94003 1.18655 0.90417 0.83659 1.05350 1.91561 1.78378 1.46543 1.93796 1.22393 0.92928 0.99781 0.95153 1.60182 1.58118 1.08866 1.02259 1.21458 1.00486 0.95272 0.89173 1.20763 0.83373 0.88034 0.84899 1.90475 1.56411 1.17875 1.85372 1.41963 1.58398 1.12575 1.08366 1.19668 1.41974 0.95989 0.88423 0.90072 1.26037 0.97292 0.96556 1.01443 1.69684 1.48818 1.09797 1.28059 0.84941 0.78454 0.77830 0.77228 1.19571 1.19814 1.19630 0.90458 0.92987 0.90967 0.87815 0.89101 0.90028 0.89502 0.92292 0.81128 0.78463 0.80308 0.83251 0.92015 0.89516 0.77266 0.91394 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.94 9.16 71.98 0.66 -2.28 16 2 C 0.07 1.46 2.89 44.91 0.13 1.59 16 3 H 0.06 1.63 7.80 -2.39 -0.02 1.61 16 4 C 0.13 2.40 5.16 86.38 0.45 2.84 16 5 N -0.58 -12.40 2.73 -850.21 -2.32 -14.72 16 6 C 0.08 1.50 8.42 127.77 1.08 2.58 16 7 C 0.56 14.14 7.38 86.79 0.64 14.78 16 8 O -0.57 -17.32 16.47 -3.88 -0.06 -17.38 16 9 C -0.16 -3.66 5.27 -20.00 -0.11 -3.76 16 10 C 0.13 3.22 10.80 85.04 0.92 4.14 16 11 N -0.48 -11.09 10.34 -194.60 -2.01 -13.11 16 12 C 0.10 1.79 11.16 84.75 0.95 2.74 16 13 C 0.04 0.76 7.33 22.43 0.16 0.93 16 14 F -0.12 -2.28 17.28 44.97 0.78 -1.50 16 15 C -0.08 -1.43 7.68 22.77 0.17 -1.25 16 16 N -0.66 -18.05 4.23 -495.62 -2.10 -20.15 16 17 C 0.07 2.26 5.96 85.56 0.51 2.78 16 18 C 0.44 20.12 7.82 87.66 0.69 20.81 16 19 O -0.62 -31.80 15.78 -3.07 -0.05 -31.84 16 20 N -0.58 -29.08 5.29 -306.98 -1.62 -30.71 16 21 C -0.33 -18.50 9.68 84.04 0.81 -17.68 16 22 H 0.08 4.80 7.16 -2.91 -0.02 4.78 16 23 C -0.01 -0.73 5.50 84.93 0.47 -0.26 16 24 N -0.92 -49.83 13.05 21.67 0.28 -49.54 16 25 Si 0.99 42.54 29.55 68.60 2.03 44.57 16 26 H -0.27 -11.21 7.11 99.48 0.71 -10.50 16 27 H -0.27 -11.20 7.11 99.48 0.71 -10.49 16 28 H -0.27 -11.64 7.11 99.48 0.71 -10.93 16 29 H 0.08 1.11 8.14 -2.38 -0.02 1.09 16 30 H 0.05 0.98 7.45 -2.39 -0.02 0.96 16 31 H 0.07 1.07 8.13 -2.39 -0.02 1.05 16 32 H 0.10 1.46 8.07 -2.39 -0.02 1.44 16 33 H 0.09 1.72 7.36 -2.38 -0.02 1.70 16 34 H 0.08 1.03 6.87 -2.39 -0.02 1.02 16 35 H 0.09 1.92 7.06 -2.39 -0.02 1.90 16 36 H 0.06 1.30 5.84 -2.38 -0.01 1.28 16 37 H 0.17 3.93 8.05 -2.91 -0.02 3.91 16 38 H 0.20 2.46 8.06 -2.91 -0.02 2.44 16 39 H 0.18 2.52 5.30 -2.91 -0.02 2.51 16 40 H 0.35 9.63 8.17 -89.69 -0.73 8.89 16 41 H 0.06 1.83 7.44 -2.39 -0.02 1.81 16 42 H 0.09 2.82 8.05 -2.39 -0.02 2.80 16 43 H 0.39 19.24 7.90 -92.70 -0.73 18.50 16 44 H 0.28 14.03 8.31 -92.71 -0.77 13.26 16 Total: -1.00 -69.46 375.43 2.05 -67.41 By element: Atomic # 1 Polarization: 39.43 SS G_CDS: -0.39 Total: 39.04 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 7.53 Total: 27.93 kcal Atomic # 7 Polarization: -120.45 SS G_CDS: -7.77 Total: -128.23 kcal Atomic # 8 Polarization: -49.11 SS G_CDS: -0.11 Total: -49.22 kcal Atomic # 9 Polarization: -2.28 SS G_CDS: 0.78 Total: -1.50 kcal Atomic # 14 Polarization: 42.54 SS G_CDS: 2.03 Total: 44.57 kcal Total: -69.46 2.05 -67.41 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331421645.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.803 kcal (2) G-P(sol) polarization free energy of solvation -69.463 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.266 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.052 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.411 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.214 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds