Wall clock time and date at job start Tue Mar 31 2020 20:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46928 * 2 1 4 4 C 1.53000 * 109.47142 * 240.00498 * 2 1 3 5 5 N 1.46498 * 109.46964 * 184.99984 * 4 2 1 6 6 C 1.46499 * 119.99848 * 269.99518 * 5 4 2 7 7 C 1.34777 * 120.00352 * 90.00146 * 5 4 2 8 8 O 1.21558 * 119.99542 * 4.85754 * 7 5 4 9 9 C 1.47841 * 120.00474 * 184.86026 * 7 5 4 10 10 C 1.39556 * 120.54930 * 141.52151 * 9 7 5 11 11 N 1.31655 * 120.62387 * 180.25320 * 10 9 7 12 12 C 1.31942 * 121.90747 * 0.04921 * 11 10 9 13 13 C 1.38533 * 121.04481 * 359.95425 * 12 11 10 14 14 F 1.35102 * 120.37327 * 179.97438 * 13 12 11 15 15 C 1.38617 * 119.25043 * 0.02562 * 13 12 11 16 16 N 1.46898 * 109.47371 * 120.00207 * 2 1 3 17 17 C 1.46900 * 110.99909 * 275.00152 * 16 2 1 18 18 C 1.50702 * 109.46814 * 179.97438 * 17 16 2 19 19 O 1.21291 * 120.00224 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99637 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99844 * 179.97438 * 20 18 17 22 22 H 1.08010 * 119.99961 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00176 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99540 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46945 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47155 * 120.00290 * 25 23 21 28 28 H 1.48504 * 109.46752 * 240.00234 * 25 23 21 29 29 H 1.09000 * 109.47711 * 299.99793 * 1 2 3 30 30 H 1.09004 * 109.47650 * 59.99830 * 1 2 3 31 31 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47310 * 64.99824 * 4 2 1 33 33 H 1.09000 * 109.46885 * 304.99935 * 4 2 1 34 34 H 1.08999 * 109.47539 * 264.85714 * 6 5 4 35 35 H 1.08996 * 109.47330 * 24.86284 * 6 5 4 36 36 H 1.09005 * 109.46946 * 144.86056 * 6 5 4 37 37 H 1.08005 * 119.68950 * 0.26365 * 10 9 7 38 38 H 1.08002 * 119.47622 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.86099 * 180.02562 * 15 13 12 40 40 H 1.00904 * 110.99802 * 38.95593 * 16 2 1 41 41 H 1.08998 * 109.47347 * 299.99865 * 17 16 2 42 42 H 1.09003 * 109.46924 * 59.99912 * 17 16 2 43 43 H 0.97001 * 120.00254 * 359.97438 * 20 18 17 44 44 H 0.97007 * 119.99403 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.3342 0.2342 -1.7613 7 6 4.0757 -1.8986 -0.6117 8 8 3.3870 -2.8194 -0.2175 9 6 5.5449 -1.9549 -0.4561 10 6 6.1158 -2.4959 0.6967 11 7 7.4238 -2.5423 0.8391 12 6 8.2429 -2.0848 -0.0886 13 6 7.7561 -1.5324 -1.2621 14 9 8.6071 -1.0676 -2.2028 15 6 6.3859 -1.4611 -1.4597 16 7 2.0197 -0.6925 1.1994 17 6 2.0824 0.2225 2.3469 18 6 2.5874 -0.5220 3.5559 19 8 2.8669 -1.6991 3.4703 20 7 2.7273 0.1201 4.7327 21 6 3.1861 -0.5573 5.8328 22 1 3.4351 -1.6056 5.7565 23 6 3.3309 0.1046 7.0459 24 7 3.0275 1.3799 7.1387 25 14 3.9568 -0.8182 8.5446 26 1 4.2256 -2.2320 8.1787 27 1 5.2104 -0.1854 9.0277 28 1 2.9324 -0.7704 9.6187 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 4.6181 -0.0346 -2.7787 35 1 3.7742 1.1692 -1.7754 36 1 5.2312 0.3571 -1.1543 37 1 5.4786 -2.8804 1.4795 38 1 9.3098 -2.1422 0.0692 39 1 5.9782 -1.0360 -2.3649 40 1 1.4496 -1.4980 1.4099 41 1 2.7588 1.0462 2.1182 42 1 1.0870 0.6162 2.5525 43 1 2.5034 1.0614 4.8013 44 1 3.1283 1.8419 7.9857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331421647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:15 Heat of formation + Delta-G solvation = -60.209274 kcal Electronic energy + Delta-G solvation = -29709.060880 eV Core-core repulsion = 25383.798582 eV Total energy + Delta-G solvation = -4325.262299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.21423 -40.75044 -39.18744 -38.23273 -36.69629 -35.16873 -33.85182 -32.82914 -31.27589 -31.09339 -30.63698 -27.63696 -26.53654 -26.23307 -24.27350 -23.93246 -23.55708 -21.05275 -19.94191 -19.18841 -17.96702 -17.80846 -17.43477 -17.17679 -16.45852 -16.26329 -16.00004 -15.72348 -15.34280 -15.14285 -14.66957 -14.46308 -14.28929 -13.94223 -13.75881 -13.63244 -13.49659 -13.26907 -13.07163 -12.86726 -12.52265 -12.41808 -12.32378 -12.12925 -12.04409 -11.66979 -11.51784 -11.34092 -11.03094 -10.97987 -10.30659 -10.26135 -10.18173 -10.04419 -9.51385 -9.47085 -9.14379 -8.72857 -8.33267 -7.94534 -7.88626 -6.37899 -3.78086 0.49042 0.80011 2.73699 2.97633 3.19567 3.29930 3.37929 3.55335 3.76291 3.96344 4.12612 4.20398 4.34969 4.35793 4.44684 4.61388 4.81890 4.88420 4.92120 5.05583 5.12165 5.21176 5.26262 5.29803 5.36384 5.40833 5.44288 5.50954 5.61370 5.71315 5.77348 5.84247 5.90093 6.04311 6.08814 6.31392 6.37257 6.49923 7.28785 7.34660 7.59572 7.65061 7.77771 8.11418 8.27391 8.66227 9.22922 9.59265 10.11255 10.80127 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.003663 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.631251 B = 7642.896796 C = 9781.910716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C 0.064 3.936 3 H 0.076 0.924 4 C 0.130 3.870 5 N -0.602 5.602 6 C 0.073 3.927 7 C 0.579 3.421 8 O -0.499 6.499 9 C -0.145 4.145 10 C 0.158 3.842 11 N -0.456 5.456 12 C 0.091 3.909 13 C 0.033 3.967 14 F -0.131 7.131 15 C -0.092 4.092 16 N -0.653 5.653 17 C 0.052 3.948 18 C 0.441 3.559 19 O -0.575 6.575 20 N -0.567 5.567 21 C -0.295 4.295 22 H 0.103 0.897 23 C 0.021 3.979 24 N -0.904 5.904 25 Si 0.927 3.073 26 H -0.267 1.267 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.059 0.941 30 H 0.059 0.941 31 H 0.060 0.940 32 H 0.078 0.922 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.073 0.927 36 H 0.072 0.928 37 H 0.181 0.819 38 H 0.169 0.831 39 H 0.157 0.843 40 H 0.354 0.646 41 H 0.079 0.921 42 H 0.040 0.960 43 H 0.391 0.609 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.454 1.742 -21.508 21.718 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.048 4.048 3 H 0.094 0.906 4 C 0.007 3.993 5 N -0.335 5.335 6 C -0.070 4.070 7 C 0.365 3.635 8 O -0.373 6.373 9 C -0.150 4.150 10 C 0.001 3.999 11 N -0.163 5.163 12 C -0.068 4.068 13 C 0.012 3.988 14 F -0.109 7.109 15 C -0.119 4.119 16 N -0.285 5.285 17 C -0.081 4.081 18 C 0.226 3.774 19 O -0.459 6.459 20 N -0.204 5.204 21 C -0.425 4.425 22 H 0.121 0.879 23 C -0.180 4.180 24 N -0.546 5.546 25 Si 0.755 3.245 26 H -0.192 1.192 27 H -0.208 1.208 28 H -0.208 1.208 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.096 0.904 33 H 0.105 0.895 34 H 0.073 0.927 35 H 0.092 0.908 36 H 0.090 0.910 37 H 0.198 0.802 38 H 0.186 0.814 39 H 0.174 0.826 40 H 0.175 0.825 41 H 0.098 0.902 42 H 0.058 0.942 43 H 0.224 0.776 44 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 3.325 0.276 -20.606 20.875 hybrid contribution -0.907 1.175 0.172 1.495 sum 2.418 1.452 -20.434 20.628 Atomic orbital electron populations 1.22462 0.96882 1.02527 1.02229 1.22014 0.92591 0.98136 0.92070 0.90617 1.21521 0.79130 1.02238 0.96422 1.47332 1.06544 1.20818 1.58787 1.22086 0.96264 0.91094 0.97561 1.17616 0.85980 0.82439 0.77448 1.90813 1.63414 1.36489 1.46574 1.20991 0.95181 1.02270 0.96564 1.23297 0.90507 0.90834 0.95312 1.67919 1.04572 1.15194 1.28616 1.23178 1.01442 0.93977 0.88157 1.18641 0.87990 1.02593 0.89610 1.91527 1.69674 1.86519 1.63225 1.22150 0.91583 0.97619 1.00566 1.60105 1.57765 1.08656 1.02020 1.21682 0.99529 0.95651 0.91228 1.19835 0.85088 0.88313 0.84140 1.90552 1.54772 1.16028 1.84505 1.41877 1.58150 1.12380 1.07976 1.19753 1.39626 0.96414 0.86717 0.87883 1.25238 0.97775 0.95759 0.99213 1.69625 1.49094 1.08883 1.26980 0.85826 0.78215 0.79736 0.80753 1.19160 1.20786 1.20830 0.92227 0.92238 0.92056 0.90398 0.89535 0.92677 0.90799 0.90974 0.80167 0.81365 0.82605 0.82527 0.90243 0.94180 0.77643 0.92038 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.76 9.16 37.15 0.34 -1.42 16 2 C 0.06 0.72 2.89 -67.72 -0.20 0.52 16 3 H 0.08 0.81 7.80 -51.93 -0.40 0.40 16 4 C 0.13 1.31 5.20 -4.04 -0.02 1.29 16 5 N -0.60 -6.69 2.77 -182.70 -0.51 -7.20 16 6 C 0.07 0.56 8.88 59.85 0.53 1.09 16 7 C 0.58 8.42 6.63 -12.33 -0.08 8.34 16 8 O -0.50 -9.10 15.89 5.31 0.08 -9.01 16 9 C -0.14 -1.94 5.27 -104.83 -0.55 -2.49 16 10 C 0.16 2.43 10.80 -17.14 -0.19 2.24 16 11 N -0.46 -6.62 10.34 -12.86 -0.13 -6.75 16 12 C 0.09 1.04 11.16 -17.40 -0.19 0.85 16 13 C 0.03 0.35 7.33 -39.33 -0.29 0.06 16 14 F -0.13 -1.30 17.28 2.25 0.04 -1.26 16 15 C -0.09 -0.96 7.67 -38.80 -0.30 -1.25 16 16 N -0.65 -10.39 4.35 -107.99 -0.47 -10.86 16 17 C 0.05 0.91 5.97 -4.97 -0.03 0.88 16 18 C 0.44 10.46 7.82 -10.98 -0.09 10.37 16 19 O -0.58 -15.71 15.78 5.55 0.09 -15.62 16 20 N -0.57 -14.49 5.29 -10.96 -0.06 -14.54 16 21 C -0.30 -8.34 9.68 -14.93 -0.14 -8.49 16 22 H 0.10 3.07 7.16 -52.48 -0.38 2.70 16 23 C 0.02 0.58 5.50 -17.47 -0.10 0.48 16 24 N -0.90 -24.87 13.05 55.50 0.72 -24.15 16 25 Si 0.93 21.44 29.55 -169.99 -5.02 16.41 16 26 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 27 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 28 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 29 H 0.06 0.63 7.45 -51.93 -0.39 0.24 16 30 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 31 H 0.06 0.62 8.13 -51.93 -0.42 0.20 16 32 H 0.08 0.54 8.07 -51.93 -0.42 0.12 16 33 H 0.09 1.01 7.36 -51.93 -0.38 0.62 16 34 H 0.05 0.30 6.87 -51.93 -0.36 -0.06 16 35 H 0.07 0.45 8.03 -51.93 -0.42 0.03 16 36 H 0.07 0.61 5.83 -51.93 -0.30 0.31 16 37 H 0.18 3.14 8.05 -52.48 -0.42 2.72 16 38 H 0.17 1.43 8.06 -52.49 -0.42 1.00 16 39 H 0.16 1.19 5.30 -52.49 -0.28 0.91 16 40 H 0.35 6.31 8.17 -39.29 -0.32 5.99 16 41 H 0.08 1.31 8.06 -51.93 -0.42 0.89 16 42 H 0.04 0.64 7.44 -51.93 -0.39 0.26 16 43 H 0.39 9.58 7.90 -40.82 -0.32 9.26 16 44 H 0.27 7.02 8.31 -40.82 -0.34 6.68 16 LS Contribution 375.70 15.07 5.66 5.66 Total: -1.00 -33.88 375.70 -6.49 -40.37 By element: Atomic # 1 Polarization: 20.08 SS G_CDS: -5.60 Total: 14.48 kcal Atomic # 6 Polarization: 13.77 SS G_CDS: -1.30 Total: 12.47 kcal Atomic # 7 Polarization: -63.06 SS G_CDS: -0.44 Total: -63.51 kcal Atomic # 8 Polarization: -24.80 SS G_CDS: 0.17 Total: -24.63 kcal Atomic # 9 Polarization: -1.30 SS G_CDS: 0.04 Total: -1.26 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -33.88 -6.49 -40.37 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331421647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.835 kcal (2) G-P(sol) polarization free energy of solvation -33.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.492 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.374 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds