Wall clock time and date at job start Tue Mar 31 2020 20:48:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 H 1.09001 * 109.46928 * 2 1 4 4 C 1.53000 * 109.47142 * 240.00498 * 2 1 3 5 5 N 1.46498 * 109.46964 * 184.99984 * 4 2 1 6 6 C 1.46499 * 119.99848 * 269.99518 * 5 4 2 7 7 C 1.34777 * 120.00352 * 90.00146 * 5 4 2 8 8 O 1.21558 * 119.99542 * 4.85754 * 7 5 4 9 9 C 1.47841 * 120.00474 * 184.86026 * 7 5 4 10 10 C 1.39556 * 120.54930 * 141.52151 * 9 7 5 11 11 N 1.31655 * 120.62387 * 180.25320 * 10 9 7 12 12 C 1.31942 * 121.90747 * 0.04921 * 11 10 9 13 13 C 1.38533 * 121.04481 * 359.95425 * 12 11 10 14 14 F 1.35102 * 120.37327 * 179.97438 * 13 12 11 15 15 C 1.38617 * 119.25043 * 0.02562 * 13 12 11 16 16 N 1.46898 * 109.47371 * 120.00207 * 2 1 3 17 17 C 1.46900 * 110.99909 * 275.00152 * 16 2 1 18 18 C 1.50702 * 109.46814 * 179.97438 * 17 16 2 19 19 O 1.21291 * 120.00224 * 359.97438 * 18 17 16 20 20 N 1.34778 * 119.99637 * 180.02562 * 18 17 16 21 21 C 1.37098 * 119.99844 * 179.97438 * 20 18 17 22 22 H 1.08010 * 119.99961 * 359.97438 * 21 20 18 23 23 C 1.38953 * 120.00176 * 179.97438 * 21 20 18 24 24 N 1.31410 * 119.99540 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00034 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.46945 * 0.02562 * 25 23 21 27 27 H 1.48503 * 109.47155 * 120.00290 * 25 23 21 28 28 H 1.48504 * 109.46752 * 240.00234 * 25 23 21 29 29 H 1.09000 * 109.47711 * 299.99793 * 1 2 3 30 30 H 1.09004 * 109.47650 * 59.99830 * 1 2 3 31 31 H 1.08996 * 109.47241 * 179.97438 * 1 2 3 32 32 H 1.08996 * 109.47310 * 64.99824 * 4 2 1 33 33 H 1.09000 * 109.46885 * 304.99935 * 4 2 1 34 34 H 1.08999 * 109.47539 * 264.85714 * 6 5 4 35 35 H 1.08996 * 109.47330 * 24.86284 * 6 5 4 36 36 H 1.09005 * 109.46946 * 144.86056 * 6 5 4 37 37 H 1.08005 * 119.68950 * 0.26365 * 10 9 7 38 38 H 1.08002 * 119.47622 * 179.97438 * 12 11 10 39 39 H 1.07999 * 120.86099 * 180.02562 * 15 13 12 40 40 H 1.00904 * 110.99802 * 38.95593 * 16 2 1 41 41 H 1.08998 * 109.47347 * 299.99865 * 17 16 2 42 42 H 1.09003 * 109.46924 * 59.99912 * 17 16 2 43 43 H 0.97001 * 120.00254 * 359.97438 * 20 18 17 44 44 H 0.97007 * 119.99403 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8932 1.0277 0.0000 4 6 2.0399 -0.7211 -1.2493 5 7 3.5000 -0.8262 -1.1906 6 6 4.3342 0.2342 -1.7613 7 6 4.0757 -1.8986 -0.6117 8 8 3.3870 -2.8194 -0.2175 9 6 5.5449 -1.9549 -0.4561 10 6 6.1158 -2.4959 0.6967 11 7 7.4238 -2.5423 0.8391 12 6 8.2429 -2.0848 -0.0886 13 6 7.7561 -1.5324 -1.2621 14 9 8.6071 -1.0676 -2.2028 15 6 6.3859 -1.4611 -1.4597 16 7 2.0197 -0.6925 1.1994 17 6 2.0824 0.2225 2.3469 18 6 2.5874 -0.5220 3.5559 19 8 2.8669 -1.6991 3.4703 20 7 2.7273 0.1201 4.7327 21 6 3.1861 -0.5573 5.8328 22 1 3.4351 -1.6056 5.7565 23 6 3.3309 0.1046 7.0459 24 7 3.0275 1.3799 7.1387 25 14 3.9568 -0.8182 8.5446 26 1 4.2256 -2.2320 8.1787 27 1 5.2104 -0.1854 9.0277 28 1 2.9324 -0.7704 9.6187 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0276 -0.0005 32 1 1.7516 -0.1582 -2.1370 33 1 1.6053 -1.7197 -1.2953 34 1 4.6181 -0.0346 -2.7787 35 1 3.7742 1.1692 -1.7754 36 1 5.2312 0.3571 -1.1543 37 1 5.4786 -2.8804 1.4795 38 1 9.3098 -2.1422 0.0692 39 1 5.9782 -1.0360 -2.3649 40 1 1.4496 -1.4980 1.4099 41 1 2.7588 1.0462 2.1182 42 1 1.0870 0.6162 2.5525 43 1 2.5034 1.0614 4.8013 44 1 3.1283 1.8419 7.9857 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331421647.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:14 Heat of formation + Delta-G solvation = -85.874784 kcal Electronic energy + Delta-G solvation = -29710.173820 eV Core-core repulsion = 25383.798582 eV Total energy + Delta-G solvation = -4326.375239 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -50.06033 -41.74627 -40.32959 -39.93986 -37.88898 -36.27223 -35.83872 -33.85554 -33.26462 -32.14919 -31.79479 -28.35335 -27.93547 -27.42595 -25.73180 -25.10262 -24.59647 -22.01655 -21.18300 -20.75951 -19.91299 -18.85622 -18.35999 -18.15005 -17.82140 -17.39865 -16.96327 -16.88873 -16.57978 -16.38777 -16.23112 -15.95733 -15.51360 -15.18716 -15.12620 -14.62691 -14.56754 -14.46065 -14.28483 -13.77866 -13.71849 -13.57051 -13.41519 -13.39020 -13.08008 -13.06060 -12.84793 -12.71259 -12.45056 -12.36956 -12.13242 -11.85444 -11.51208 -11.34379 -10.99187 -10.54428 -10.33434 -10.13213 -10.00519 -9.59803 -9.11195 -8.47453 -5.95343 -0.48502 -0.14872 1.34627 1.39552 1.53993 1.71645 2.06260 2.06774 2.28567 2.54808 2.83869 2.98459 3.19970 3.26479 3.42724 3.55967 3.60620 3.63231 3.97031 4.04392 4.20546 4.27370 4.36285 4.38598 4.42412 4.47796 4.55219 4.58416 4.60809 4.68374 4.81001 4.85470 4.91996 4.95993 5.07292 5.29059 5.40545 5.40982 5.65504 5.93484 6.18936 6.40247 6.46739 6.61130 6.64551 7.13636 7.26077 7.57053 8.13949 8.70366 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.009446 B = 0.003663 C = 0.002862 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2963.631251 B = 7642.896796 C = 9781.910716 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C 0.064 3.936 3 H 0.092 0.908 4 C 0.129 3.871 5 N -0.595 5.595 6 C 0.063 3.937 7 C 0.571 3.429 8 O -0.552 6.552 9 C -0.152 4.152 10 C 0.132 3.868 11 N -0.483 5.483 12 C 0.091 3.909 13 C 0.047 3.953 14 F -0.120 7.120 15 C -0.072 4.072 16 N -0.667 5.667 17 C 0.070 3.930 18 C 0.436 3.564 19 O -0.617 6.617 20 N -0.575 5.575 21 C -0.330 4.330 22 H 0.074 0.926 23 C -0.011 4.011 24 N -0.921 5.921 25 Si 0.989 3.011 26 H -0.276 1.276 27 H -0.270 1.270 28 H -0.269 1.269 29 H 0.050 0.950 30 H 0.090 0.910 31 H 0.050 0.950 32 H 0.125 0.875 33 H 0.065 0.935 34 H 0.087 0.913 35 H 0.098 0.902 36 H 0.062 0.938 37 H 0.141 0.859 38 H 0.198 0.802 39 H 0.192 0.808 40 H 0.339 0.661 41 H 0.098 0.902 42 H 0.061 0.939 43 H 0.395 0.605 44 H 0.277 0.723 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.882 4.209 -23.962 24.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C -0.047 4.047 3 H 0.110 0.890 4 C 0.006 3.994 5 N -0.326 5.326 6 C -0.079 4.079 7 C 0.358 3.642 8 O -0.430 6.430 9 C -0.157 4.157 10 C -0.026 4.026 11 N -0.191 5.191 12 C -0.068 4.068 13 C 0.025 3.975 14 F -0.098 7.098 15 C -0.099 4.099 16 N -0.299 5.299 17 C -0.062 4.062 18 C 0.224 3.776 19 O -0.503 6.503 20 N -0.213 5.213 21 C -0.460 4.460 22 H 0.092 0.908 23 C -0.211 4.211 24 N -0.562 5.562 25 Si 0.813 3.187 26 H -0.201 1.201 27 H -0.195 1.195 28 H -0.194 1.194 29 H 0.069 0.931 30 H 0.109 0.891 31 H 0.069 0.931 32 H 0.142 0.858 33 H 0.084 0.916 34 H 0.105 0.895 35 H 0.117 0.883 36 H 0.081 0.919 37 H 0.158 0.842 38 H 0.215 0.785 39 H 0.208 0.792 40 H 0.157 0.843 41 H 0.116 0.884 42 H 0.079 0.921 43 H 0.229 0.771 44 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.740 2.825 -23.100 23.570 hybrid contribution -0.989 0.452 0.823 1.364 sum 2.751 3.277 -22.277 22.684 Atomic orbital electron populations 1.22375 0.95439 1.02250 1.03280 1.22183 0.93796 0.98448 0.90256 0.88987 1.21684 0.78391 1.01800 0.97512 1.47452 1.07424 1.20368 1.57365 1.22399 0.95828 0.91000 0.98645 1.17889 0.86251 0.82826 0.77270 1.90783 1.64481 1.38662 1.49084 1.20856 0.95202 1.02956 0.96705 1.22815 0.90894 0.92991 0.95854 1.67831 1.04389 1.16533 1.30343 1.23637 1.02340 0.92996 0.87860 1.18543 0.88121 1.01560 0.89246 1.91565 1.69352 1.86206 1.62682 1.22377 0.91081 0.95939 1.00454 1.60118 1.58637 1.08379 1.02768 1.21500 1.00503 0.95214 0.89027 1.20986 0.83332 0.88100 0.85215 1.90532 1.56110 1.18283 1.85366 1.41929 1.58706 1.12488 1.08181 1.19652 1.41976 0.95759 0.88614 0.90763 1.25972 0.97304 0.96608 1.01210 1.69674 1.48913 1.09601 1.28005 0.84931 0.78295 0.77997 0.77489 1.20121 1.19501 1.19389 0.93119 0.89126 0.93068 0.85759 0.91602 0.89478 0.88311 0.91891 0.84176 0.78483 0.79153 0.84263 0.88415 0.92080 0.77125 0.91346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.99 9.16 71.98 0.66 -2.33 16 2 C 0.06 1.30 2.89 44.91 0.13 1.43 16 3 H 0.09 1.61 7.80 -2.39 -0.02 1.60 16 4 C 0.13 2.29 5.20 86.38 0.45 2.74 16 5 N -0.59 -12.07 2.77 -850.21 -2.36 -14.43 16 6 C 0.06 0.71 8.88 127.77 1.13 1.84 16 7 C 0.57 16.92 6.63 86.79 0.58 17.50 16 8 O -0.55 -21.54 15.89 -3.90 -0.06 -21.61 16 9 C -0.15 -4.14 5.27 -20.00 -0.11 -4.25 16 10 C 0.13 4.40 10.80 85.04 0.92 5.31 16 11 N -0.48 -14.70 10.34 -194.59 -2.01 -16.71 16 12 C 0.09 1.97 11.16 84.75 0.95 2.92 16 13 C 0.05 0.88 7.33 22.43 0.16 1.04 16 14 F -0.12 -1.96 17.28 44.97 0.78 -1.18 16 15 C -0.07 -1.34 7.67 22.78 0.17 -1.17 16 16 N -0.67 -21.42 4.35 -495.58 -2.15 -23.57 16 17 C 0.07 2.45 5.97 85.56 0.51 2.96 16 18 C 0.44 21.54 7.82 87.66 0.69 22.23 16 19 O -0.62 -35.95 15.78 -3.06 -0.05 -35.99 16 20 N -0.58 -30.44 5.29 -306.97 -1.62 -32.06 16 21 C -0.33 -19.42 9.68 84.04 0.81 -18.61 16 22 H 0.07 4.72 7.16 -2.91 -0.02 4.70 16 23 C -0.01 -0.63 5.50 84.93 0.47 -0.16 16 24 N -0.92 -50.62 13.05 21.66 0.28 -50.34 16 25 Si 0.99 44.44 29.55 68.60 2.03 46.47 16 26 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 27 H -0.27 -11.57 7.11 99.48 0.71 -10.86 16 28 H -0.27 -11.46 7.11 99.48 0.71 -10.76 16 29 H 0.05 0.97 7.45 -2.39 -0.02 0.95 16 30 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 31 H 0.05 0.99 8.13 -2.39 -0.02 0.97 16 32 H 0.12 1.10 8.07 -2.39 -0.02 1.08 16 33 H 0.07 1.49 7.36 -2.39 -0.02 1.47 16 34 H 0.09 0.47 6.87 -2.39 -0.02 0.46 16 35 H 0.10 0.68 8.03 -2.39 -0.02 0.66 16 36 H 0.06 0.86 5.83 -2.38 -0.01 0.85 16 37 H 0.14 5.69 8.05 -2.91 -0.02 5.67 16 38 H 0.20 2.96 8.06 -2.91 -0.02 2.94 16 39 H 0.19 2.10 5.30 -2.91 -0.02 2.08 16 40 H 0.34 12.67 8.17 -89.69 -0.73 11.94 16 41 H 0.10 3.07 8.06 -2.39 -0.02 3.06 16 42 H 0.06 1.89 7.44 -2.39 -0.02 1.87 16 43 H 0.40 19.78 7.90 -92.71 -0.73 19.04 16 44 H 0.28 14.20 8.31 -92.70 -0.77 13.43 16 Total: -1.00 -79.80 375.70 1.95 -77.84 By element: Atomic # 1 Polarization: 40.52 SS G_CDS: -0.40 Total: 40.12 kcal Atomic # 6 Polarization: 23.94 SS G_CDS: 7.52 Total: 31.46 kcal Atomic # 7 Polarization: -129.25 SS G_CDS: -7.87 Total: -137.12 kcal Atomic # 8 Polarization: -57.49 SS G_CDS: -0.11 Total: -57.60 kcal Atomic # 9 Polarization: -1.96 SS G_CDS: 0.78 Total: -1.18 kcal Atomic # 14 Polarization: 44.44 SS G_CDS: 2.03 Total: 46.47 kcal Total: -79.80 1.95 -77.84 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331421647.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.032 kcal (2) G-P(sol) polarization free energy of solvation -79.796 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.828 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.953 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.842 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.875 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds