Wall clock time and date at job start Tue Mar 31 2020 20:48:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 C 1.53007 * 109.46952 * 240.00885 * 2 1 3 5 5 N 1.46498 * 109.46985 * 184.99932 * 4 2 1 6 6 C 1.46497 * 119.99965 * 269.99874 * 5 4 2 7 7 C 1.34775 * 120.00030 * 89.99740 * 5 4 2 8 8 O 1.21535 * 120.00186 * 354.52839 * 7 5 4 9 9 C 1.48047 * 120.00134 * 174.80482 * 7 5 4 10 10 C 1.39378 * 119.69625 * 172.94549 * 9 7 5 11 11 C 1.38465 * 119.09683 * 179.73201 * 10 9 7 12 12 C 1.38899 * 118.46760 * 0.53091 * 11 10 9 13 13 F 1.35096 * 120.35209 * 179.74893 * 12 11 10 14 14 C 1.38873 * 119.29685 * 359.73073 * 12 11 10 15 15 N 1.31456 * 120.86018 * 0.02562 * 14 12 11 16 16 N 1.46897 * 109.47341 * 120.00750 * 2 1 3 17 17 C 1.46897 * 110.99715 * 274.99799 * 16 2 1 18 18 C 1.50696 * 109.47253 * 179.97438 * 17 16 2 19 19 O 1.21295 * 119.99815 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00449 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00539 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99673 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00440 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99791 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00166 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47076 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47218 * 120.00082 * 25 23 21 28 28 H 1.48495 * 109.47022 * 239.99910 * 25 23 21 29 29 H 1.09002 * 109.47403 * 299.99559 * 1 2 3 30 30 H 1.09002 * 109.47370 * 59.99680 * 1 2 3 31 31 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47259 * 64.99522 * 4 2 1 33 33 H 1.09001 * 109.46845 * 304.99719 * 4 2 1 34 34 H 1.09005 * 109.46719 * 265.00574 * 6 5 4 35 35 H 1.08997 * 109.47472 * 25.00402 * 6 5 4 36 36 H 1.08997 * 109.47294 * 145.00920 * 6 5 4 37 37 H 1.08007 * 120.45152 * 359.97438 * 10 9 7 38 38 H 1.08005 * 120.76895 * 180.25842 * 11 10 9 39 39 H 1.08003 * 119.57083 * 179.97438 * 14 12 11 40 40 H 1.00901 * 110.99973 * 151.04694 * 16 2 1 41 41 H 1.09000 * 109.47682 * 300.00228 * 17 16 2 42 42 H 1.09008 * 109.47180 * 60.00003 * 17 16 2 43 43 H 0.97004 * 119.99736 * 359.97438 * 20 18 17 44 44 H 0.96996 * 119.99668 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8262 -1.1908 6 6 4.3343 0.2343 -1.7613 7 6 4.0757 -1.8986 -0.6119 8 8 3.3879 -2.7289 -0.0512 9 6 5.5466 -2.0619 -0.6538 10 6 6.1480 -3.0901 0.0699 11 6 7.5240 -3.2349 0.0174 12 6 8.2554 -2.3375 -0.7500 13 9 9.6004 -2.4405 -0.8242 14 6 7.5894 -1.3335 -1.4406 15 7 6.2810 -1.2240 -1.3755 16 7 2.0197 -0.6926 1.1993 17 6 2.0825 0.2224 2.3468 18 6 2.5874 -0.5221 3.5558 19 8 2.8670 -1.6993 3.4702 20 7 2.7274 0.1198 4.7326 21 6 3.1863 -0.5576 5.8327 22 1 3.4359 -1.6056 5.7562 23 6 3.3311 0.1043 7.0458 24 7 3.0277 1.3796 7.1387 25 14 3.9569 -0.8185 8.5445 26 1 4.2245 -2.2327 8.1789 27 1 5.2106 -0.1859 9.0275 28 1 2.9327 -0.7708 9.6185 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1581 -2.1370 33 1 1.6054 -1.7196 -1.2954 34 1 4.6159 -0.0334 -2.7798 35 1 3.7751 1.1698 -1.7730 36 1 5.2325 0.3553 -1.1559 37 1 5.5484 -3.7672 0.6604 38 1 8.0177 -4.0247 0.5642 39 1 8.1537 -0.6330 -2.0384 40 1 2.9174 -1.1206 1.0285 41 1 2.7589 1.0460 2.1182 42 1 1.0871 0.6161 2.5525 43 1 2.5035 1.0611 4.8013 44 1 3.1285 1.8416 7.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331422456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:04 Heat of formation + Delta-G solvation = -49.152772 kcal Electronic energy + Delta-G solvation = -29571.162226 eV Core-core repulsion = 25246.379373 eV Total energy + Delta-G solvation = -4324.782853 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -49.38750 -41.05700 -39.43668 -38.11911 -36.63870 -35.03796 -33.80578 -32.87212 -31.59958 -31.16583 -30.64102 -27.50935 -26.48520 -26.22906 -24.39805 -24.06222 -23.66036 -20.87105 -19.91766 -19.18476 -18.05762 -17.94128 -17.78984 -17.36542 -16.64789 -16.18525 -16.15714 -15.63866 -15.26588 -15.06266 -14.66662 -14.42711 -14.28370 -14.05137 -13.83852 -13.75107 -13.66869 -13.22611 -13.05968 -12.98738 -12.62803 -12.40965 -12.22011 -11.96299 -11.77023 -11.58969 -11.44100 -11.30355 -11.07420 -10.81704 -10.38089 -10.30635 -10.28866 -10.16668 -9.66471 -9.45255 -9.34245 -8.72448 -8.30266 -7.90967 -7.83916 -6.35882 -3.76046 0.18317 0.70959 2.47020 2.75243 3.19691 3.29550 3.37340 3.45771 3.55575 3.79337 4.00006 4.16621 4.27833 4.34864 4.41988 4.49678 4.87846 4.93548 5.07596 5.09539 5.27700 5.30604 5.31486 5.38221 5.46860 5.53434 5.55068 5.58942 5.79124 5.81666 5.85481 5.90091 6.08227 6.10348 6.15796 6.30341 6.39199 6.50145 7.09625 7.25916 7.43628 7.60962 7.88964 8.06015 8.14181 8.69464 9.24980 9.62110 10.14977 10.82328 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008662 B = 0.003634 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.779093 B = 7702.605276 C =10124.920090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.066 3.934 3 H 0.040 0.960 4 C 0.113 3.887 5 N -0.607 5.607 6 C 0.088 3.912 7 C 0.560 3.440 8 O -0.490 6.490 9 C 0.068 3.932 10 C -0.072 4.072 11 C -0.114 4.114 12 C 0.070 3.930 13 F -0.126 7.126 14 C 0.065 3.935 15 N -0.425 5.425 16 N -0.658 5.658 17 C 0.049 3.951 18 C 0.442 3.558 19 O -0.574 6.574 20 N -0.568 5.568 21 C -0.295 4.295 22 H 0.103 0.897 23 C 0.020 3.980 24 N -0.904 5.904 25 Si 0.928 3.072 26 H -0.268 1.268 27 H -0.282 1.282 28 H -0.282 1.282 29 H 0.058 0.942 30 H 0.052 0.948 31 H 0.065 0.935 32 H 0.085 0.915 33 H 0.093 0.907 34 H 0.060 0.940 35 H 0.059 0.941 36 H 0.090 0.910 37 H 0.164 0.836 38 H 0.157 0.843 39 H 0.174 0.826 40 H 0.354 0.646 41 H 0.036 0.964 42 H 0.084 0.916 43 H 0.391 0.609 44 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.025 -0.362 -21.505 22.336 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.046 4.046 3 H 0.058 0.942 4 C -0.009 4.009 5 N -0.340 5.340 6 C -0.055 4.055 7 C 0.346 3.654 8 O -0.363 6.363 9 C -0.070 4.070 10 C -0.093 4.093 11 C -0.141 4.141 12 C 0.048 3.952 13 F -0.104 7.104 14 C -0.096 4.096 15 N -0.136 5.136 16 N -0.297 5.297 17 C -0.084 4.084 18 C 0.227 3.773 19 O -0.458 6.458 20 N -0.205 5.205 21 C -0.425 4.425 22 H 0.120 0.880 23 C -0.181 4.181 24 N -0.546 5.546 25 Si 0.755 3.245 26 H -0.193 1.193 27 H -0.209 1.209 28 H -0.208 1.208 29 H 0.077 0.923 30 H 0.071 0.929 31 H 0.084 0.916 32 H 0.103 0.897 33 H 0.112 0.888 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.109 0.891 37 H 0.181 0.819 38 H 0.174 0.826 39 H 0.191 0.809 40 H 0.179 0.821 41 H 0.054 0.946 42 H 0.102 0.898 43 H 0.224 0.776 44 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 4.849 -1.115 -21.392 21.963 hybrid contribution 1.737 0.332 1.142 2.105 sum 6.586 -0.783 -20.250 21.309 Atomic orbital electron populations 1.21745 0.94019 1.02705 1.01131 1.21943 0.96414 0.95765 0.90445 0.94193 1.21837 0.78472 1.03117 0.97523 1.47752 1.07109 1.21138 1.58023 1.22124 0.95260 0.88640 0.99474 1.17871 0.85943 0.82324 0.79264 1.90960 1.62473 1.42095 1.40768 1.21249 0.94652 0.94004 0.97063 1.22164 0.94109 0.96997 0.96019 1.21740 0.94186 0.99597 0.98543 1.19084 0.78177 0.98202 0.99750 1.91548 1.28689 1.95525 1.94674 1.23019 0.90715 0.97040 0.98781 1.68135 1.05882 1.23254 1.16342 1.60243 1.36364 1.30994 1.02147 1.21734 1.00908 0.93897 0.91846 1.19867 0.84718 0.88283 0.84428 1.90548 1.54614 1.15934 1.84661 1.41871 1.58321 1.12373 1.07960 1.19748 1.39540 0.96398 0.86811 0.87957 1.25238 0.97886 0.95778 0.99153 1.69628 1.49165 1.08860 1.26941 0.85820 0.78188 0.79630 0.80833 1.19251 1.20856 1.20764 0.92278 0.92890 0.91630 0.89658 0.88823 0.92129 0.92178 0.89145 0.81855 0.82568 0.80897 0.82080 0.94624 0.89786 0.77588 0.92050 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.64 9.41 37.16 0.35 -1.29 16 2 C 0.07 0.89 2.95 -67.71 -0.20 0.69 16 3 H 0.04 0.51 7.80 -51.93 -0.40 0.11 16 4 C 0.11 1.31 5.16 -4.04 -0.02 1.29 16 5 N -0.61 -7.48 2.66 -182.62 -0.49 -7.97 16 6 C 0.09 0.83 9.12 59.85 0.55 1.37 16 7 C 0.56 8.36 6.21 -12.24 -0.08 8.29 16 8 O -0.49 -9.07 14.19 5.33 0.08 -9.00 16 9 C 0.07 0.88 6.56 -83.02 -0.54 0.34 16 10 C -0.07 -0.87 9.63 -39.07 -0.38 -1.25 16 11 C -0.11 -1.11 10.15 -39.25 -0.40 -1.51 16 12 C 0.07 0.65 7.36 -39.10 -0.29 0.37 16 13 F -0.13 -1.18 17.28 2.25 0.04 -1.14 16 14 C 0.07 0.57 11.17 -17.48 -0.20 0.38 16 15 N -0.42 -4.54 6.16 -9.74 -0.06 -4.60 16 16 N -0.66 -12.26 5.75 -107.99 -0.62 -12.88 16 17 C 0.05 0.96 5.96 -4.98 -0.03 0.93 16 18 C 0.44 11.20 7.82 -10.99 -0.09 11.11 16 19 O -0.57 -16.68 15.78 5.54 0.09 -16.60 16 20 N -0.57 -15.08 5.29 -10.97 -0.06 -15.13 16 21 C -0.30 -8.52 9.68 -14.94 -0.14 -8.67 16 22 H 0.10 3.11 7.16 -52.48 -0.38 2.73 16 23 C 0.02 0.56 5.50 -17.47 -0.10 0.47 16 24 N -0.90 -25.20 13.05 55.50 0.72 -24.48 16 25 Si 0.93 21.57 29.55 -169.99 -5.02 16.55 16 26 H -0.27 -6.24 7.11 56.52 0.40 -5.84 16 27 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 28 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 29 H 0.06 0.75 7.45 -51.93 -0.39 0.36 16 30 H 0.05 0.48 8.14 -51.93 -0.42 0.05 16 31 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.09 0.70 8.07 -51.93 -0.42 0.28 16 33 H 0.09 1.22 7.50 -51.93 -0.39 0.83 16 34 H 0.06 0.50 8.01 -51.93 -0.42 0.08 16 35 H 0.06 0.47 8.03 -51.93 -0.42 0.06 16 36 H 0.09 0.94 5.73 -51.93 -0.30 0.64 16 37 H 0.16 2.05 7.65 -52.48 -0.40 1.65 16 38 H 0.16 1.16 8.06 -52.48 -0.42 0.73 16 39 H 0.17 0.97 8.06 -52.48 -0.42 0.55 16 40 H 0.35 7.11 4.00 -39.29 -0.16 6.95 16 41 H 0.04 0.65 8.06 -51.93 -0.42 0.23 16 42 H 0.08 1.52 7.44 -51.92 -0.39 1.13 16 43 H 0.39 9.92 7.90 -40.82 -0.32 9.60 16 44 H 0.27 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 373.26 15.07 5.62 5.62 Total: -1.00 -34.99 373.26 -6.88 -41.86 By element: Atomic # 1 Polarization: 20.86 SS G_CDS: -5.62 Total: 15.24 kcal Atomic # 6 Polarization: 14.07 SS G_CDS: -1.56 Total: 12.51 kcal Atomic # 7 Polarization: -64.55 SS G_CDS: -0.50 Total: -65.05 kcal Atomic # 8 Polarization: -25.76 SS G_CDS: 0.16 Total: -25.59 kcal Atomic # 9 Polarization: -1.18 SS G_CDS: 0.04 Total: -1.14 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -5.02 Total: 16.55 kcal Total LS contribution 5.62 Total: 5.62 kcal Total: -34.99 -6.88 -41.86 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331422456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.290 kcal (2) G-P(sol) polarization free energy of solvation -34.987 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -42.277 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.863 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.153 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds