Wall clock time and date at job start Tue Mar 31 2020 20:48:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09002 * 109.46940 * 2 1 4 4 C 1.53007 * 109.46952 * 240.00885 * 2 1 3 5 5 N 1.46498 * 109.46985 * 184.99932 * 4 2 1 6 6 C 1.46497 * 119.99965 * 269.99874 * 5 4 2 7 7 C 1.34775 * 120.00030 * 89.99740 * 5 4 2 8 8 O 1.21535 * 120.00186 * 354.52839 * 7 5 4 9 9 C 1.48047 * 120.00134 * 174.80482 * 7 5 4 10 10 C 1.39378 * 119.69625 * 172.94549 * 9 7 5 11 11 C 1.38465 * 119.09683 * 179.73201 * 10 9 7 12 12 C 1.38899 * 118.46760 * 0.53091 * 11 10 9 13 13 F 1.35096 * 120.35209 * 179.74893 * 12 11 10 14 14 C 1.38873 * 119.29685 * 359.73073 * 12 11 10 15 15 N 1.31456 * 120.86018 * 0.02562 * 14 12 11 16 16 N 1.46897 * 109.47341 * 120.00750 * 2 1 3 17 17 C 1.46897 * 110.99715 * 274.99799 * 16 2 1 18 18 C 1.50696 * 109.47253 * 179.97438 * 17 16 2 19 19 O 1.21295 * 119.99815 * 359.97438 * 18 17 16 20 20 N 1.34775 * 120.00449 * 180.02562 * 18 17 16 21 21 C 1.37094 * 120.00539 * 179.97438 * 20 18 17 22 22 H 1.08003 * 119.99673 * 0.02562 * 21 20 18 23 23 C 1.38946 * 120.00440 * 179.97438 * 21 20 18 24 24 N 1.31420 * 119.99791 * 0.02562 * 23 21 20 25 25 Si 1.86800 * 120.00166 * 180.02562 * 23 21 20 26 26 H 1.48494 * 109.47076 * 359.97438 * 25 23 21 27 27 H 1.48499 * 109.47218 * 120.00082 * 25 23 21 28 28 H 1.48495 * 109.47022 * 239.99910 * 25 23 21 29 29 H 1.09002 * 109.47403 * 299.99559 * 1 2 3 30 30 H 1.09002 * 109.47370 * 59.99680 * 1 2 3 31 31 H 1.09000 * 109.47071 * 179.97438 * 1 2 3 32 32 H 1.08993 * 109.47259 * 64.99522 * 4 2 1 33 33 H 1.09001 * 109.46845 * 304.99719 * 4 2 1 34 34 H 1.09005 * 109.46719 * 265.00574 * 6 5 4 35 35 H 1.08997 * 109.47472 * 25.00402 * 6 5 4 36 36 H 1.08997 * 109.47294 * 145.00920 * 6 5 4 37 37 H 1.08007 * 120.45152 * 359.97438 * 10 9 7 38 38 H 1.08005 * 120.76895 * 180.25842 * 11 10 9 39 39 H 1.08003 * 119.57083 * 179.97438 * 14 12 11 40 40 H 1.00901 * 110.99973 * 151.04694 * 16 2 1 41 41 H 1.09000 * 109.47682 * 300.00228 * 17 16 2 42 42 H 1.09008 * 109.47180 * 60.00003 * 17 16 2 43 43 H 0.97004 * 119.99736 * 359.97438 * 20 18 17 44 44 H 0.96996 * 119.99668 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7211 -1.2494 5 7 3.5000 -0.8262 -1.1908 6 6 4.3343 0.2343 -1.7613 7 6 4.0757 -1.8986 -0.6119 8 8 3.3879 -2.7289 -0.0512 9 6 5.5466 -2.0619 -0.6538 10 6 6.1480 -3.0901 0.0699 11 6 7.5240 -3.2349 0.0174 12 6 8.2554 -2.3375 -0.7500 13 9 9.6004 -2.4405 -0.8242 14 6 7.5894 -1.3335 -1.4406 15 7 6.2810 -1.2240 -1.3755 16 7 2.0197 -0.6926 1.1993 17 6 2.0825 0.2224 2.3468 18 6 2.5874 -0.5221 3.5558 19 8 2.8670 -1.6993 3.4702 20 7 2.7274 0.1198 4.7326 21 6 3.1863 -0.5576 5.8327 22 1 3.4359 -1.6056 5.7562 23 6 3.3311 0.1043 7.0458 24 7 3.0277 1.3796 7.1387 25 14 3.9569 -0.8185 8.5445 26 1 4.2245 -2.2327 8.1789 27 1 5.2106 -0.1859 9.0275 28 1 2.9327 -0.7708 9.6185 29 1 -0.3634 0.5138 0.8900 30 1 -0.3634 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.7516 -0.1581 -2.1370 33 1 1.6054 -1.7196 -1.2954 34 1 4.6159 -0.0334 -2.7798 35 1 3.7751 1.1698 -1.7730 36 1 5.2325 0.3553 -1.1559 37 1 5.5484 -3.7672 0.6604 38 1 8.0177 -4.0247 0.5642 39 1 8.1537 -0.6330 -2.0384 40 1 2.9174 -1.1206 1.0285 41 1 2.7589 1.0460 2.1182 42 1 1.0871 0.6161 2.5525 43 1 2.5035 1.0611 4.8013 44 1 3.1285 1.8416 7.9856 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001331422456.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:48:03 Heat of formation + Delta-G solvation = -74.663880 kcal Electronic energy + Delta-G solvation = -29572.268471 eV Core-core repulsion = 25246.379373 eV Total energy + Delta-G solvation = -4325.889097 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 338.154 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -50.15112 -41.99444 -40.49866 -39.97061 -37.86344 -36.27486 -35.82005 -33.72962 -33.31096 -32.55599 -31.81118 -28.39777 -28.00026 -27.38829 -25.81047 -25.18417 -24.65168 -21.90754 -21.17321 -20.88060 -19.94792 -18.90007 -18.75251 -18.25998 -18.06980 -17.34392 -17.12833 -16.94430 -16.47920 -16.42187 -16.12517 -15.96795 -15.56436 -15.22997 -15.11001 -14.87402 -14.58635 -14.36667 -14.26557 -14.04986 -13.87677 -13.64964 -13.48692 -13.32118 -13.03142 -12.94321 -12.89509 -12.57469 -12.44988 -12.37774 -12.13043 -11.96262 -11.53640 -11.42874 -11.13512 -10.53432 -10.35440 -10.19254 -10.03348 -9.67420 -9.24673 -8.48650 -5.97509 -0.69506 -0.08294 1.34353 1.39223 1.49868 1.54045 1.82833 2.02030 2.27622 2.55025 2.75924 2.93313 2.96388 3.17821 3.46601 3.52163 3.63123 3.69303 3.91198 4.03012 4.20415 4.24127 4.32521 4.40485 4.46598 4.52231 4.56213 4.57498 4.69289 4.72562 4.81802 4.91290 4.97005 5.08470 5.11906 5.35295 5.38664 5.42681 5.57989 5.91215 6.13607 6.19758 6.40783 6.50366 6.58832 6.99959 7.10764 7.53070 8.09917 8.69229 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.008662 B = 0.003634 C = 0.002765 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3231.779093 B = 7702.605276 C =10124.920090 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.063 3.937 3 H 0.058 0.942 4 C 0.114 3.886 5 N -0.602 5.602 6 C 0.086 3.914 7 C 0.550 3.450 8 O -0.543 6.543 9 C 0.048 3.952 10 C -0.092 4.092 11 C -0.111 4.111 12 C 0.074 3.926 13 F -0.122 7.122 14 C 0.075 3.925 15 N -0.421 5.421 16 N -0.682 5.682 17 C 0.064 3.936 18 C 0.434 3.566 19 O -0.619 6.619 20 N -0.572 5.572 21 C -0.334 4.334 22 H 0.075 0.925 23 C -0.012 4.012 24 N -0.920 5.920 25 Si 0.993 3.007 26 H -0.275 1.275 27 H -0.268 1.268 28 H -0.269 1.269 29 H 0.049 0.951 30 H 0.090 0.910 31 H 0.048 0.952 32 H 0.130 0.870 33 H 0.073 0.927 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.081 0.919 37 H 0.145 0.855 38 H 0.176 0.824 39 H 0.212 0.788 40 H 0.344 0.656 41 H 0.056 0.944 42 H 0.103 0.897 43 H 0.396 0.604 44 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.906 1.720 -22.784 23.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.191 4.191 2 C -0.048 4.048 3 H 0.076 0.924 4 C -0.008 4.008 5 N -0.334 5.334 6 C -0.056 4.056 7 C 0.338 3.662 8 O -0.419 6.419 9 C -0.089 4.089 10 C -0.113 4.113 11 C -0.137 4.137 12 C 0.052 3.948 13 F -0.100 7.100 14 C -0.087 4.087 15 N -0.132 5.132 16 N -0.321 5.321 17 C -0.069 4.069 18 C 0.221 3.779 19 O -0.505 6.505 20 N -0.210 5.210 21 C -0.463 4.463 22 H 0.093 0.907 23 C -0.211 4.211 24 N -0.561 5.561 25 Si 0.817 3.183 26 H -0.200 1.200 27 H -0.193 1.193 28 H -0.194 1.194 29 H 0.068 0.932 30 H 0.109 0.891 31 H 0.067 0.933 32 H 0.148 0.852 33 H 0.091 0.909 34 H 0.095 0.905 35 H 0.101 0.899 36 H 0.099 0.901 37 H 0.163 0.837 38 H 0.194 0.806 39 H 0.229 0.771 40 H 0.168 0.832 41 H 0.074 0.926 42 H 0.121 0.879 43 H 0.230 0.770 44 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.708 1.040 -22.703 23.433 hybrid contribution 1.520 -0.272 1.481 2.140 sum 7.229 0.768 -21.222 22.433 Atomic orbital electron populations 1.21733 0.92797 1.02090 1.02530 1.22148 0.97306 0.96266 0.89032 0.92434 1.21940 0.78034 1.02552 0.98323 1.47903 1.07746 1.20862 1.56847 1.22286 0.94896 0.88577 0.99795 1.18273 0.86745 0.82422 0.78798 1.90919 1.63734 1.44059 1.43217 1.21097 0.94073 0.95151 0.98554 1.22102 0.95139 0.97277 0.96763 1.21917 0.93216 1.00168 0.98437 1.19129 0.78256 0.98048 0.99353 1.91565 1.28383 1.95482 1.94580 1.23636 0.90121 0.96943 0.97967 1.68176 1.06576 1.22511 1.15964 1.60273 1.36099 1.31920 1.03830 1.21592 1.01837 0.93637 0.89816 1.20916 0.83352 0.88078 0.85519 1.90519 1.56244 1.18171 1.85530 1.41916 1.58487 1.12474 1.08103 1.19684 1.42185 0.95842 0.88628 0.90663 1.26038 0.97182 0.96644 1.01259 1.69682 1.48635 1.09664 1.28106 0.84873 0.78309 0.77946 0.77204 1.20007 1.19291 1.19411 0.93185 0.89118 0.93282 0.85189 0.90890 0.90527 0.89873 0.90065 0.83725 0.80618 0.77147 0.83174 0.92572 0.87949 0.77040 0.91236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.94 9.41 71.98 0.68 -2.26 16 2 C 0.06 1.60 2.95 44.92 0.13 1.73 16 3 H 0.06 1.29 7.80 -2.39 -0.02 1.27 16 4 C 0.11 2.47 5.16 86.38 0.45 2.91 16 5 N -0.60 -14.35 2.66 -849.97 -2.26 -16.61 16 6 C 0.09 1.41 9.12 127.77 1.17 2.57 16 7 C 0.55 17.13 6.21 86.85 0.54 17.67 16 8 O -0.54 -21.68 14.19 -3.83 -0.05 -21.73 16 9 C 0.05 1.27 6.56 41.88 0.27 1.55 16 10 C -0.09 -2.36 9.63 22.60 0.22 -2.15 16 11 C -0.11 -2.16 10.15 22.48 0.23 -1.93 16 12 C 0.07 1.27 7.36 22.58 0.17 1.44 16 13 F -0.12 -2.02 17.28 44.97 0.78 -1.24 16 14 C 0.07 1.15 11.17 84.90 0.95 2.10 16 15 N -0.42 -8.50 6.16 -184.74 -1.14 -9.64 16 16 N -0.68 -25.68 5.75 -495.57 -2.85 -28.53 16 17 C 0.06 2.50 5.96 85.56 0.51 3.01 16 18 C 0.43 22.73 7.82 87.66 0.69 23.41 16 19 O -0.62 -37.86 15.78 -3.07 -0.05 -37.91 16 20 N -0.57 -31.20 5.29 -306.99 -1.62 -32.83 16 21 C -0.33 -19.86 9.68 84.04 0.81 -19.04 16 22 H 0.08 4.81 7.16 -2.91 -0.02 4.79 16 23 C -0.01 -0.64 5.50 84.92 0.47 -0.17 16 24 N -0.92 -50.80 13.05 21.66 0.28 -50.51 16 25 Si 0.99 44.17 29.55 68.60 2.03 46.20 16 26 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 27 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 28 H -0.27 -11.40 7.11 99.48 0.71 -10.69 16 29 H 0.05 1.19 7.45 -2.39 -0.02 1.17 16 30 H 0.09 1.31 8.14 -2.39 -0.02 1.29 16 31 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.13 1.65 8.07 -2.39 -0.02 1.63 16 33 H 0.07 1.92 7.50 -2.39 -0.02 1.90 16 34 H 0.08 1.03 8.01 -2.38 -0.02 1.01 16 35 H 0.08 0.99 8.03 -2.39 -0.02 0.97 16 36 H 0.08 1.53 5.73 -2.39 -0.01 1.52 16 37 H 0.14 4.17 7.65 -2.91 -0.02 4.15 16 38 H 0.18 2.55 8.06 -2.91 -0.02 2.52 16 39 H 0.21 1.55 8.06 -2.91 -0.02 1.53 16 40 H 0.34 14.32 4.00 -89.69 -0.36 13.96 16 41 H 0.06 1.96 8.06 -2.39 -0.02 1.95 16 42 H 0.10 3.62 7.44 -2.38 -0.02 3.60 16 43 H 0.40 20.38 7.90 -92.71 -0.73 19.65 16 44 H 0.28 14.26 8.31 -92.71 -0.77 13.49 16 Total: -1.00 -79.73 373.26 2.35 -77.38 By element: Atomic # 1 Polarization: 44.61 SS G_CDS: -0.03 Total: 44.58 kcal Atomic # 6 Polarization: 23.56 SS G_CDS: 7.27 Total: 30.83 kcal Atomic # 7 Polarization: -130.52 SS G_CDS: -7.59 Total: -138.12 kcal Atomic # 8 Polarization: -59.54 SS G_CDS: -0.10 Total: -59.64 kcal Atomic # 9 Polarization: -2.02 SS G_CDS: 0.78 Total: -1.24 kcal Atomic # 14 Polarization: 44.17 SS G_CDS: 2.03 Total: 46.20 kcal Total: -79.73 2.35 -77.38 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331422456.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.718 kcal (2) G-P(sol) polarization free energy of solvation -79.733 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.015 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.382 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.664 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds