Wall clock time and date at job start Tue Mar 31 2020 20:24:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47274 * 2 1 4 4 N 1.46500 * 109.47429 * 239.99946 * 2 1 3 5 5 C 1.34770 * 120.00140 * 84.72038 * 4 2 1 6 6 O 1.21287 * 120.00018 * 0.28290 * 5 4 2 7 7 C 1.50698 * 120.00185 * 180.27746 * 5 4 2 8 8 H 1.09002 * 115.55260 * 325.72575 * 7 5 4 9 9 C 1.53002 * 117.50105 * 111.39794 * 7 5 4 10 10 C 1.52984 * 59.99943 * 107.49086 * 9 7 5 11 11 C 1.52994 * 138.58782 * 130.89412 * 10 9 7 12 12 C 1.52994 * 138.58872 * 229.10788 * 10 9 7 13 13 C 1.52998 * 109.46796 * 119.99778 * 2 1 3 14 14 C 1.53941 * 113.74396 * 281.81958 * 13 2 1 15 15 N 1.47812 * 86.03652 * 222.08407 * 14 13 2 16 16 C 1.34783 * 134.45874 * 204.64050 * 15 14 13 17 17 O 1.21276 * 120.00358 * 179.86988 * 16 15 14 18 18 C 1.50707 * 119.99694 * 359.87191 * 16 15 14 19 19 S 1.80991 * 109.47109 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00230 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99787 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00155 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99904 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99963 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46831 * 90.00183 * 24 22 20 26 26 H 1.48504 * 109.46950 * 210.00057 * 24 22 20 27 27 H 1.48498 * 109.47244 * 330.00075 * 24 22 20 28 28 C 1.47572 * 91.05360 * 24.55120 * 15 14 13 29 29 H 1.08994 * 109.47470 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47058 * 299.99864 * 1 2 3 31 31 H 1.09005 * 109.47039 * 59.99305 * 1 2 3 32 32 H 0.97000 * 119.99746 * 265.00709 * 4 2 1 33 33 H 1.09002 * 117.50200 * 214.98134 * 9 7 5 34 34 H 1.09001 * 117.49535 * 359.97438 * 9 7 5 35 35 H 1.08996 * 117.50395 * 238.38386 * 11 10 9 36 36 H 1.09000 * 117.49871 * 23.40842 * 11 10 9 37 37 H 1.09000 * 117.50100 * 336.59950 * 12 10 9 38 38 H 1.09002 * 117.50109 * 121.59718 * 12 10 9 39 39 H 1.09004 * 112.94523 * 53.41671 * 13 2 1 40 40 H 1.08997 * 113.77082 * 336.35167 * 14 13 2 41 41 H 1.09005 * 113.76910 * 107.74728 * 14 13 2 42 42 H 1.09004 * 109.47212 * 299.99985 * 18 16 15 43 43 H 1.09000 * 109.47080 * 59.99461 * 18 16 15 44 44 H 0.96997 * 119.99920 * 179.97438 * 23 22 20 45 45 H 1.08995 * 113.77231 * 221.15389 * 28 15 14 46 46 H 1.09004 * 113.87646 * 89.76286 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1418 -0.0197 -2.3584 6 8 1.8534 1.1571 -2.4130 7 6 2.6383 -0.7316 -3.5904 8 1 3.3826 -1.5087 -3.4165 9 6 1.6409 -0.9511 -4.7297 10 6 2.7567 0.0849 -4.8787 11 6 3.8317 0.4754 -5.8950 12 6 2.9161 1.5471 -5.2999 13 6 2.0399 -0.7212 1.2493 14 6 1.9743 0.1330 2.5283 15 7 3.3097 -0.4179 2.8417 16 6 4.0081 -0.6113 3.9780 17 8 5.1167 -1.1010 3.9326 18 6 3.4114 -0.2191 5.3052 19 16 4.5833 -0.6020 6.6303 20 6 3.6552 -0.0586 8.0261 21 1 2.6691 0.3600 7.8891 22 6 4.1918 -0.1677 9.3015 23 7 3.4987 0.2387 10.3441 24 14 5.8977 -0.8911 9.5383 25 1 6.9089 0.1946 9.4751 26 1 5.9721 -1.5604 10.8619 27 1 6.1681 -1.8826 8.4664 28 6 3.5701 -0.6730 1.4117 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 1.7293 -1.8723 -5.3056 34 1 0.6256 -0.5808 -4.5880 35 1 4.8693 0.4582 -5.5618 36 1 3.6670 0.1938 -6.9350 37 1 2.1492 1.9706 -5.9484 38 1 3.3511 2.2351 -4.5749 39 1 1.6175 -1.7193 1.3659 40 1 1.9751 1.2066 2.3401 41 1 1.1952 -0.1775 3.2245 42 1 3.1981 0.8498 5.3060 43 1 2.4873 -0.7741 5.4663 44 1 3.8735 0.1621 11.2354 45 1 4.0626 -1.6259 1.2179 46 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001335148939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:08 Heat of formation + Delta-G solvation = 20.569798 kcal Electronic energy + Delta-G solvation = -25788.186724 eV Core-core repulsion = 22000.347694 eV Total energy + Delta-G solvation = -3787.839030 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -40.83978 -40.02117 -38.22503 -37.53270 -35.31851 -33.16301 -32.45389 -31.48367 -30.23964 -27.83691 -26.41180 -25.62654 -25.03639 -23.22643 -22.78931 -20.98293 -20.86651 -19.48187 -19.17632 -17.77167 -17.50471 -16.93089 -16.67268 -15.70392 -15.52650 -15.43861 -15.30086 -15.13213 -14.93682 -14.49766 -14.26526 -14.01443 -13.79135 -13.06104 -12.97294 -12.86558 -12.79521 -12.71173 -12.53124 -12.17641 -12.03578 -11.92728 -11.86789 -11.31304 -11.28684 -11.06241 -11.01930 -10.67076 -10.62561 -10.58207 -10.44531 -10.05959 -9.86845 -9.59671 -9.39258 -9.01741 -8.71298 -8.51898 -6.94042 -6.30184 -4.02322 2.11919 2.53770 2.58208 2.91082 3.08637 3.25948 3.32294 3.35403 3.49428 3.55343 3.81651 4.00436 4.26164 4.30292 4.31519 4.37132 4.45307 4.62920 4.71593 4.74152 4.96753 4.99337 5.04252 5.08726 5.09075 5.12294 5.20208 5.22232 5.22652 5.24703 5.27342 5.35409 5.42266 5.45117 5.54246 5.59558 5.71924 5.77856 5.79557 5.89790 5.92455 5.99668 6.10453 7.12237 7.68867 7.88499 7.92838 8.39198 8.40244 9.15908 10.78986 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.001792 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.204273 B =15623.887345 C =16123.164741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.152 3.848 3 H 0.093 0.907 4 N -0.722 5.722 5 C 0.543 3.457 6 O -0.532 6.532 7 C -0.144 4.144 8 H 0.125 0.875 9 C -0.100 4.100 10 C -0.202 4.202 11 C -0.130 4.130 12 C -0.113 4.113 13 C -0.134 4.134 14 C 0.114 3.886 15 N -0.650 5.650 16 C 0.554 3.446 17 O -0.517 6.517 18 C -0.116 4.116 19 S -0.143 6.143 20 C -0.521 4.521 21 H 0.088 0.912 22 C 0.096 3.904 23 N -0.880 5.880 24 Si 0.857 3.143 25 H -0.267 1.267 26 H -0.274 1.274 27 H -0.235 1.235 28 C 0.116 3.884 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.061 0.939 32 H 0.402 0.598 33 H 0.106 0.894 34 H 0.101 0.899 35 H 0.097 0.903 36 H 0.099 0.901 37 H 0.097 0.903 38 H 0.100 0.900 39 H 0.109 0.891 40 H 0.089 0.911 41 H 0.089 0.911 42 H 0.096 0.904 43 H 0.096 0.904 44 H 0.271 0.729 45 H 0.081 0.919 46 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.926 -2.740 -32.617 33.457 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.221 4.221 2 C 0.048 3.952 3 H 0.111 0.889 4 N -0.374 5.374 5 C 0.329 3.671 6 O -0.407 6.407 7 C -0.165 4.165 8 H 0.142 0.858 9 C -0.137 4.137 10 C -0.203 4.203 11 C -0.167 4.167 12 C -0.149 4.149 13 C -0.154 4.154 14 C -0.010 4.010 15 N -0.389 5.389 16 C 0.344 3.656 17 O -0.392 6.392 18 C -0.267 4.267 19 S 0.084 5.916 20 C -0.669 4.669 21 H 0.106 0.894 22 C -0.113 4.113 23 N -0.516 5.516 24 Si 0.681 3.319 25 H -0.192 1.192 26 H -0.199 1.199 27 H -0.159 1.159 28 C -0.007 4.007 29 H 0.078 0.922 30 H 0.089 0.911 31 H 0.080 0.920 32 H 0.236 0.764 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.116 0.884 36 H 0.117 0.883 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.128 0.872 40 H 0.107 0.893 41 H 0.107 0.893 42 H 0.114 0.886 43 H 0.114 0.886 44 H 0.081 0.919 45 H 0.099 0.901 46 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -5.370 -2.611 -32.285 32.833 hybrid contribution -0.544 -0.140 0.635 0.848 sum -5.915 -2.751 -31.650 32.315 Atomic orbital electron populations 1.22159 0.94599 1.02434 1.02914 1.20950 0.94473 0.97266 0.82552 0.88874 1.45979 1.67847 1.14212 1.09337 1.19674 0.77112 0.86781 0.83512 1.90714 1.49447 1.15748 1.84841 1.21981 1.04089 1.02389 0.88012 0.85761 1.22654 0.94330 0.99024 0.97694 1.21153 1.02863 0.98513 0.97743 1.22779 0.95158 1.01905 0.96820 1.22607 1.01240 0.89477 1.01622 1.23535 0.96622 1.01122 0.94119 1.23192 0.85324 0.98536 0.93906 1.49994 1.19064 1.64354 1.05503 1.20019 0.84440 0.77357 0.83793 1.90708 1.19029 1.43226 1.86213 1.23221 1.04062 1.04931 0.94460 1.84792 1.24982 1.83148 0.98707 1.22303 1.05668 1.47818 0.91102 0.89373 1.24706 0.97919 0.93934 0.94700 1.69935 1.37734 1.45178 0.98766 0.86737 0.84254 0.81331 0.79547 1.19187 1.19892 1.15946 1.23057 0.94940 1.01979 0.80687 0.92213 0.91119 0.91979 0.76415 0.87549 0.88082 0.88442 0.88288 0.88512 0.88128 0.87240 0.89320 0.89252 0.88608 0.88558 0.91923 0.90078 0.90002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 9.44 37.16 0.35 -0.68 16 2 C 0.15 1.03 2.29 -67.93 -0.16 0.88 16 3 H 0.09 0.81 7.49 -51.93 -0.39 0.42 16 4 N -0.72 -4.48 4.95 -53.81 -0.27 -4.75 16 5 C 0.54 4.63 7.58 -10.99 -0.08 4.55 16 6 O -0.53 -6.54 15.91 5.55 0.09 -6.45 16 7 C -0.14 -0.93 6.19 -91.78 -0.57 -1.50 16 8 H 0.12 0.57 8.14 -51.93 -0.42 0.14 16 9 C -0.10 -0.56 10.23 -26.74 -0.27 -0.83 16 10 C -0.20 -1.46 5.05 -154.53 -0.78 -2.24 16 11 C -0.13 -0.76 10.53 -26.73 -0.28 -1.04 16 12 C -0.11 -0.83 10.16 -26.73 -0.27 -1.11 16 13 C -0.13 -0.94 3.35 -89.69 -0.30 -1.24 16 14 C 0.11 1.02 8.08 -2.84 -0.02 1.00 16 15 N -0.65 -8.70 3.61 -178.16 -0.64 -9.34 16 16 C 0.55 10.32 8.08 -10.98 -0.09 10.23 16 17 O -0.52 -11.65 16.59 5.56 0.09 -11.56 16 18 C -0.12 -2.31 5.91 36.01 0.21 -2.10 16 19 S -0.14 -3.67 18.55 -107.50 -1.99 -5.66 16 20 C -0.52 -15.10 10.04 30.94 0.31 -14.79 16 21 H 0.09 2.65 8.03 -52.48 -0.42 2.23 16 22 C 0.10 2.82 5.50 -17.43 -0.10 2.72 16 23 N -0.88 -26.55 13.97 55.49 0.78 -25.78 16 24 Si 0.86 21.87 27.74 -169.99 -4.71 17.15 16 25 H -0.27 -6.74 7.11 56.52 0.40 -6.34 16 26 H -0.27 -6.71 7.11 56.52 0.40 -6.30 16 27 H -0.24 -6.01 6.74 56.52 0.38 -5.63 16 28 C 0.12 1.16 8.27 -2.97 -0.02 1.13 16 29 H 0.06 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 31 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 32 H 0.40 1.57 8.60 -40.82 -0.35 1.22 16 33 H 0.11 0.39 8.14 -51.93 -0.42 -0.03 16 34 H 0.10 0.61 8.14 -51.93 -0.42 0.19 16 35 H 0.10 0.53 8.14 -51.93 -0.42 0.10 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.10 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.10 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.11 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.09 0.71 8.03 -51.93 -0.42 0.29 16 41 H 0.09 0.73 8.14 -51.93 -0.42 0.30 16 42 H 0.10 1.80 8.14 -51.91 -0.42 1.37 16 43 H 0.10 1.78 8.14 -51.92 -0.42 1.36 16 44 H 0.27 7.59 8.31 -40.82 -0.34 7.26 16 45 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 46 H 0.08 0.80 8.10 -51.93 -0.42 0.38 16 LS Contribution 403.59 15.07 6.08 6.08 Total: -1.00 -36.97 403.59 -10.15 -47.12 By element: Atomic # 1 Polarization: 5.70 SS G_CDS: -7.49 Total: -1.80 kcal Atomic # 6 Polarization: -2.94 SS G_CDS: -2.07 Total: -5.01 kcal Atomic # 7 Polarization: -39.74 SS G_CDS: -0.13 Total: -39.87 kcal Atomic # 8 Polarization: -18.19 SS G_CDS: 0.18 Total: -18.01 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -4.71 Total: 17.15 kcal Atomic # 16 Polarization: -3.67 SS G_CDS: -1.99 Total: -5.66 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -36.97 -10.15 -47.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335148939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.690 kcal (2) G-P(sol) polarization free energy of solvation -36.974 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.147 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.120 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds