Wall clock time and date at job start Tue Mar 31 2020 20:24:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08995 * 109.47274 * 2 1 4 4 N 1.46500 * 109.47429 * 239.99946 * 2 1 3 5 5 C 1.34770 * 120.00140 * 84.72038 * 4 2 1 6 6 O 1.21287 * 120.00018 * 0.28290 * 5 4 2 7 7 C 1.50698 * 120.00185 * 180.27746 * 5 4 2 8 8 H 1.09002 * 115.55260 * 325.72575 * 7 5 4 9 9 C 1.53002 * 117.50105 * 111.39794 * 7 5 4 10 10 C 1.52984 * 59.99943 * 107.49086 * 9 7 5 11 11 C 1.52994 * 138.58782 * 130.89412 * 10 9 7 12 12 C 1.52994 * 138.58872 * 229.10788 * 10 9 7 13 13 C 1.52998 * 109.46796 * 119.99778 * 2 1 3 14 14 C 1.53941 * 113.74396 * 281.81958 * 13 2 1 15 15 N 1.47812 * 86.03652 * 222.08407 * 14 13 2 16 16 C 1.34783 * 134.45874 * 204.64050 * 15 14 13 17 17 O 1.21276 * 120.00358 * 179.86988 * 16 15 14 18 18 C 1.50707 * 119.99694 * 359.87191 * 16 15 14 19 19 S 1.80991 * 109.47109 * 179.97438 * 18 16 15 20 20 C 1.76203 * 100.00230 * 180.02562 * 19 18 16 21 21 H 1.08003 * 119.99787 * 359.97438 * 20 19 18 22 22 C 1.38796 * 120.00155 * 180.02562 * 20 19 18 23 23 N 1.31629 * 119.99904 * 179.97438 * 22 20 19 24 24 Si 1.86804 * 119.99963 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46831 * 90.00183 * 24 22 20 26 26 H 1.48504 * 109.46950 * 210.00057 * 24 22 20 27 27 H 1.48498 * 109.47244 * 330.00075 * 24 22 20 28 28 C 1.47572 * 91.05360 * 24.55120 * 15 14 13 29 29 H 1.08994 * 109.47470 * 179.97438 * 1 2 3 30 30 H 1.08996 * 109.47058 * 299.99864 * 1 2 3 31 31 H 1.09005 * 109.47039 * 59.99305 * 1 2 3 32 32 H 0.97000 * 119.99746 * 265.00709 * 4 2 1 33 33 H 1.09002 * 117.50200 * 214.98134 * 9 7 5 34 34 H 1.09001 * 117.49535 * 359.97438 * 9 7 5 35 35 H 1.08996 * 117.50395 * 238.38386 * 11 10 9 36 36 H 1.09000 * 117.49871 * 23.40842 * 11 10 9 37 37 H 1.09000 * 117.50100 * 336.59950 * 12 10 9 38 38 H 1.09002 * 117.50109 * 121.59718 * 12 10 9 39 39 H 1.09004 * 112.94523 * 53.41671 * 13 2 1 40 40 H 1.08997 * 113.77082 * 336.35167 * 14 13 2 41 41 H 1.09005 * 113.76910 * 107.74728 * 14 13 2 42 42 H 1.09004 * 109.47212 * 299.99985 * 18 16 15 43 43 H 1.09000 * 109.47080 * 59.99461 * 18 16 15 44 44 H 0.96997 * 119.99920 * 179.97438 * 23 22 20 45 45 H 1.08995 * 113.77231 * 221.15389 * 28 15 14 46 46 H 1.09004 * 113.87646 * 89.76286 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 7 2.0184 -0.6906 -1.1961 5 6 2.1418 -0.0197 -2.3584 6 8 1.8534 1.1571 -2.4130 7 6 2.6383 -0.7316 -3.5904 8 1 3.3826 -1.5087 -3.4165 9 6 1.6409 -0.9511 -4.7297 10 6 2.7567 0.0849 -4.8787 11 6 3.8317 0.4754 -5.8950 12 6 2.9161 1.5471 -5.2999 13 6 2.0399 -0.7212 1.2493 14 6 1.9743 0.1330 2.5283 15 7 3.3097 -0.4179 2.8417 16 6 4.0081 -0.6113 3.9780 17 8 5.1167 -1.1010 3.9326 18 6 3.4114 -0.2191 5.3052 19 16 4.5833 -0.6020 6.6303 20 6 3.6552 -0.0586 8.0261 21 1 2.6691 0.3600 7.8891 22 6 4.1918 -0.1677 9.3015 23 7 3.4987 0.2387 10.3441 24 14 5.8977 -0.8911 9.5383 25 1 6.9089 0.1946 9.4751 26 1 5.9721 -1.5604 10.8619 27 1 6.1681 -1.8826 8.4664 28 6 3.5701 -0.6730 1.4117 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5140 -0.8900 32 1 2.2490 -1.6318 -1.1525 33 1 1.7293 -1.8723 -5.3056 34 1 0.6256 -0.5808 -4.5880 35 1 4.8693 0.4582 -5.5618 36 1 3.6670 0.1938 -6.9350 37 1 2.1492 1.9706 -5.9484 38 1 3.3511 2.2351 -4.5749 39 1 1.6175 -1.7193 1.3659 40 1 1.9751 1.2066 2.3401 41 1 1.1952 -0.1775 3.2245 42 1 3.1981 0.8498 5.3060 43 1 2.4873 -0.7741 5.4663 44 1 3.8735 0.1621 11.2354 45 1 4.0626 -1.6259 1.2179 46 1 4.0408 0.1622 0.8930 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001335148939.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 20:24:07 Heat of formation + Delta-G solvation = -4.034338 kcal Electronic energy + Delta-G solvation = -25789.253639 eV Core-core repulsion = 22000.347694 eV Total energy + Delta-G solvation = -3788.905946 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 338.145 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -41.66552 -40.84030 -39.23057 -38.34169 -36.08505 -34.69357 -33.68783 -32.39611 -31.38087 -28.93365 -27.85879 -27.20917 -25.66079 -23.96764 -23.28203 -21.69446 -21.45907 -20.49549 -19.99419 -19.57651 -18.24081 -17.94178 -17.60724 -17.18985 -16.82278 -16.57830 -16.06932 -15.89481 -15.82630 -15.69388 -15.32895 -15.08038 -14.92561 -14.69919 -14.05880 -13.77635 -13.61473 -13.58745 -13.36649 -13.34585 -13.06864 -12.98469 -12.78584 -12.64271 -12.57696 -12.36606 -11.97129 -11.89158 -11.78856 -11.19077 -11.17575 -11.07603 -11.01266 -10.91889 -10.67622 -10.57439 -10.08122 -9.81594 -9.03528 -8.53334 -6.25138 0.92388 1.30019 1.40802 1.47379 1.50298 1.52157 1.91222 2.03382 2.23364 2.64142 2.76351 2.84796 2.84888 3.25290 3.35734 3.46197 3.65760 3.81220 3.88547 3.98779 4.11275 4.13016 4.17372 4.38186 4.40902 4.44383 4.48830 4.51020 4.56508 4.61058 4.64147 4.75492 4.77651 4.82319 4.84549 4.84965 5.00543 5.01782 5.07153 5.19317 5.26706 5.36250 5.53206 5.68883 6.09198 6.50154 6.59712 6.91600 7.01347 7.30000 8.58970 Molecular weight = 338.15amu Principal moments of inertia in cm(-1) A = 0.029275 B = 0.001792 C = 0.001736 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 956.204273 B =15623.887345 C =16123.164741 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.159 3.841 3 H 0.075 0.925 4 N -0.710 5.710 5 C 0.539 3.461 6 O -0.576 6.576 7 C -0.145 4.145 8 H 0.148 0.852 9 C -0.085 4.085 10 C -0.229 4.229 11 C -0.112 4.112 12 C -0.132 4.132 13 C -0.104 4.104 14 C 0.107 3.893 15 N -0.649 5.649 16 C 0.554 3.446 17 O -0.567 6.567 18 C -0.102 4.102 19 S -0.177 6.177 20 C -0.530 4.530 21 H 0.063 0.937 22 C 0.047 3.953 23 N -0.915 5.915 24 Si 0.914 3.086 25 H -0.263 1.263 26 H -0.257 1.257 27 H -0.237 1.237 28 C 0.111 3.889 29 H 0.074 0.926 30 H 0.079 0.921 31 H 0.043 0.957 32 H 0.416 0.584 33 H 0.132 0.868 34 H 0.093 0.907 35 H 0.100 0.900 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.131 0.869 40 H 0.102 0.898 41 H 0.105 0.895 42 H 0.107 0.893 43 H 0.112 0.888 44 H 0.277 0.723 45 H 0.085 0.915 46 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.286 -4.357 -34.474 35.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.054 3.946 3 H 0.093 0.907 4 N -0.361 5.361 5 C 0.326 3.674 6 O -0.456 6.456 7 C -0.166 4.166 8 H 0.166 0.834 9 C -0.122 4.122 10 C -0.230 4.230 11 C -0.149 4.149 12 C -0.169 4.169 13 C -0.124 4.124 14 C -0.015 4.015 15 N -0.385 5.385 16 C 0.343 3.657 17 O -0.446 6.446 18 C -0.253 4.253 19 S 0.050 5.950 20 C -0.677 4.677 21 H 0.081 0.919 22 C -0.158 4.158 23 N -0.553 5.553 24 Si 0.736 3.264 25 H -0.188 1.188 26 H -0.181 1.181 27 H -0.161 1.161 28 C -0.011 4.011 29 H 0.093 0.907 30 H 0.098 0.902 31 H 0.062 0.938 32 H 0.253 0.747 33 H 0.150 0.850 34 H 0.111 0.889 35 H 0.119 0.881 36 H 0.134 0.866 37 H 0.117 0.883 38 H 0.098 0.902 39 H 0.149 0.851 40 H 0.120 0.880 41 H 0.123 0.877 42 H 0.125 0.875 43 H 0.131 0.869 44 H 0.087 0.913 45 H 0.103 0.897 46 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -5.780 -4.243 -34.172 34.917 hybrid contribution -0.580 0.448 1.066 1.293 sum -6.360 -3.795 -33.107 33.925 Atomic orbital electron populations 1.22114 0.93768 1.03252 1.02486 1.20818 0.94940 0.96347 0.82541 0.90722 1.45874 1.66909 1.14808 1.08558 1.20085 0.76458 0.86338 0.84511 1.90700 1.51534 1.17757 1.85588 1.22077 1.05037 1.02529 0.86982 0.83428 1.22740 0.93384 0.99242 0.96858 1.21431 1.04393 0.98322 0.98819 1.22827 0.94830 0.99858 0.97371 1.22565 1.02445 0.89860 1.02065 1.23335 0.94161 1.01721 0.93143 1.23588 0.83294 0.99731 0.94918 1.50051 1.20228 1.62733 1.05469 1.19668 0.84025 0.77461 0.84591 1.90681 1.21036 1.45910 1.87000 1.23175 1.02856 1.05884 0.93342 1.84717 1.27151 1.83336 0.99796 1.22433 1.05028 1.47502 0.92753 0.91920 1.25546 1.01478 0.94304 0.94518 1.70009 1.39507 1.46311 0.99439 0.85879 0.79829 0.80721 0.80008 1.18775 1.18099 1.16143 1.23335 0.97234 1.02343 0.78209 0.90722 0.90245 0.93785 0.74696 0.85027 0.88873 0.88127 0.86602 0.88252 0.90186 0.85107 0.88016 0.87672 0.87488 0.86947 0.91308 0.89673 0.89783 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.62 9.44 71.98 0.68 -0.94 16 2 C 0.16 1.79 2.29 44.99 0.10 1.90 16 3 H 0.07 1.19 7.49 -2.39 -0.02 1.18 16 4 N -0.71 -7.23 4.95 -442.55 -2.19 -9.42 16 5 C 0.54 8.58 7.58 87.66 0.66 9.24 16 6 O -0.58 -14.30 15.91 -3.05 -0.05 -14.35 16 7 C -0.15 -1.62 6.19 -11.54 -0.07 -1.69 16 8 H 0.15 0.90 8.14 -2.39 -0.02 0.88 16 9 C -0.09 -0.78 10.23 30.59 0.31 -0.46 16 10 C -0.23 -3.04 5.05 -52.19 -0.26 -3.31 16 11 C -0.11 -1.16 10.53 30.59 0.32 -0.84 16 12 C -0.13 -2.00 10.16 30.59 0.31 -1.69 16 13 C -0.10 -1.12 3.35 -10.13 -0.03 -1.16 16 14 C 0.11 1.59 8.08 86.44 0.70 2.29 16 15 N -0.65 -15.99 3.61 -835.97 -3.02 -19.01 16 16 C 0.55 20.02 8.08 87.66 0.71 20.73 16 17 O -0.57 -25.42 16.59 -3.02 -0.05 -25.47 16 18 C -0.10 -3.96 5.91 71.24 0.42 -3.54 16 19 S -0.18 -9.08 18.55 -56.49 -1.05 -10.13 16 20 C -0.53 -31.04 10.04 67.95 0.68 -30.36 16 21 H 0.06 3.86 8.03 -2.91 -0.02 3.84 16 22 C 0.05 2.78 5.50 84.86 0.47 3.24 16 23 N -0.91 -55.69 13.97 21.65 0.30 -55.39 16 24 Si 0.91 45.18 27.74 68.60 1.90 47.08 16 25 H -0.26 -12.73 7.11 99.48 0.71 -12.02 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.24 -11.75 6.74 99.48 0.67 -11.08 16 28 C 0.11 1.94 8.27 86.49 0.72 2.66 16 29 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 30 H 0.08 0.69 8.08 -2.39 -0.02 0.67 16 31 H 0.04 0.64 8.14 -2.38 -0.02 0.62 16 32 H 0.42 1.91 8.60 -92.71 -0.80 1.12 16 33 H 0.13 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.10 0.95 8.14 -2.39 -0.02 0.94 16 36 H 0.12 0.78 8.14 -2.39 -0.02 0.77 16 37 H 0.10 1.35 8.14 -2.39 -0.02 1.33 16 38 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 39 H 0.13 1.00 8.14 -2.38 -0.02 0.98 16 40 H 0.10 1.34 8.03 -2.39 -0.02 1.32 16 41 H 0.11 1.33 8.14 -2.38 -0.02 1.31 16 42 H 0.11 3.91 8.14 -2.39 -0.02 3.89 16 43 H 0.11 3.99 8.14 -2.40 -0.02 3.97 16 44 H 0.28 15.59 8.31 -92.71 -0.77 14.82 16 45 H 0.08 1.48 8.14 -2.39 -0.02 1.46 16 46 H 0.08 1.49 8.10 -2.38 -0.02 1.47 16 Total: -1.00 -82.50 403.59 1.71 -80.79 By element: Atomic # 1 Polarization: 9.69 SS G_CDS: 0.14 Total: 9.84 kcal Atomic # 6 Polarization: -9.64 SS G_CDS: 5.72 Total: -3.93 kcal Atomic # 7 Polarization: -78.91 SS G_CDS: -4.91 Total: -83.82 kcal Atomic # 8 Polarization: -39.73 SS G_CDS: -0.10 Total: -39.83 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 1.90 Total: 47.08 kcal Atomic # 16 Polarization: -9.08 SS G_CDS: -1.05 Total: -10.13 kcal Total: -82.50 1.71 -80.79 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001335148939.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.751 kcal (2) G-P(sol) polarization free energy of solvation -82.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds